Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007157

Physical Location & Seq

Genomic Coordinates Forward (+)

67596651 .. 67598627

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0548100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1977 bp

ATGAAGCTCTACTTCTTCTCCAAGCGCCATTGCAGCTCTCTGATATCCTCCAATCTCCACAAAACCCAAAACCCACCACCCAAACAATCCCAAATCCTCCACCTCTGCAAATTCGGCTTACTTTTCGATGCGATTCGAATCCTCAACTCCATAAACCCCTCTGAAATCACCCTCAAACCACTCGTCTACGCTTCACTCTTGCAGACATGCACCAAGGCCGTTTCTCTCACCCACGGCCTCCAAATCCACGCCCACGTCATCAAGTCGGGCCTCGAAACCGACCGGTTCGTCGGGAACAGCTTGCTGTCTCTGTACTTCAAGCTGATCCCCGACATGTCCGAAACCCGGAGAGTGTTTGATGCTCTGTATTTTAGGGACGTGATATCGTGGACGTCGATGATCACCGGGTACGTTCGCGCCGGAAAGCCTGCTACCTCAGTTGCATTGTTTTGGGAGATGGTCAGTTTCGGGATTGAGCCGAATGACTTCACTGTATCCGCGGTGGTCAAGGCTTGTTCGCAGGTCGGGTACTACAGCCTCGGCCGGTGCTTGCATGGAGTGGTTGTGAGTCGTGGGTTTGATTCGAATCCGGTCATTATTACTGCTTTGATTGACATGTATGGGAGAAACCATAGGCCGGGGGATGCACGCCAGCTATTTGATGAAATGATTGAACCGGGCGCGATCTGTTGGACGTCGGTGATTTCAGCGCTGACGCGGAACGATTTGTTTAGGGAAGCATTGGGGTATTTTTATTTGATGCAGAGATGTCATGGGTTGTTCCCGGATGGGTTTACGTTTGGGACTGTATTGACTGCTTGTGGCAATCTGGGGAGGCTGAGGCTGAGGCAAGGTCGAGAAATGCACGCGAAGGTCGTTACGTACGGGCTTTGTGGAAATGTGGTTGTGGAGAGTAGCTTGGTTGACATGTATGGGAAATGTGGGAGTGTAGATGATTCTCGGCGTGTTTTTGATAGGATGCCCGTGAAGAACTCTGTTTCGTGGTCTGCGTTGCTCGGGGTGTACTGTCAAGCGGGAGAATTTGAGTCTGTCATTAAGCATTTCAGGGAGATGGAAGAGGCTGACCTGTACTGCTTTGGAACTGTTCTTCGTGCGTGTGCAGGCTTGGCGGCTGTACAACATGGGAAAGAGGTTCATTGCCAGTATGTGAGAAGGTGTGGTTGGAGAGATGTGATTGTTGAGTCGGCCCTAGTTAATCTCTATGCAAAATGTGGTTGCATAGATTTTGCCCGTAGTGTTTTCAGCCAGATGCTAGTTAGGAATTTGATTACATGGAACTCGATGATTTGTGGGTTTGCTCAAAATGGCCAAGGTGAAGAAGCTCTTGGAATATTTGATGAGATGATTAAAGAGGGGATGAAGCCTGACTACATCAGCTTTATTGGGGTTCTATTTGCATCTAGTCATGCAGGTTTGGTTGATCAAGGGCGAAAGAACTTTATCTTGATGACAAAAGAGTATGGGATCAAACCTGGGATTGAACATTATTGTTGCATGGTTGATCTCCTCGGCCGTGCTGGGCTACTGGAAGAAGCAGAGAATTTAATAGAGAGTGCAGAGTGTAGAAATGATTCTTCCCTTTGGGCAGTTCTTCTAGGTGCTAGCACAACCTGTACGAACTCTGCTACTGCAGAGCGCATAGCCAAGAAAATGATAAAACTTGAACCTGACTACCATTTGAGTTATGTTCTTCTAGCTAATGTCTACAGATCAGTAGGCCGATGGGATGATGCCATGGAGATTGCCAAGCTGATGCAAGATAGAGGAGTTAAGAAGACTCCGGCTAAGAGCTGGATTGAATCTAATAGTAGATTGGGTTCTCATCTTCATGTTGGTGATGTGCACATACCTAGAAAAATAGATTTTAATGCTGTTTGGGGACATTGTGTGAAAACGAGAATAGACGGAAGTGAATCAAAAGTTGGGTATCAACCCATGTTGGAGGCTGGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000372 GO:0000373 GO:0000375 GO:0000376 GO:0000377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

658

Amino Acids

73.42

Weight (kDa)

8.32

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	125 - 173	5.1e-10	PPR repeat family
PPR	PF01535	128 - 158	6.4e-06	PPR repeat
PPR_1	PF12854	425 - 455	6.3e-06	PPR repeat
PPR_2	PF13041	428 - 467	3.6e-10	PPR repeat family
PPR	PF01535	430 - 459	2.9e-10	PPR repeat
E_motif	PF20431	550 - 607	1.5e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01370
fragaria_vesca	FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050
malus_domestica	MD17G1040600.v1.1
prunus_persica	Prupe.3G278400_v2.0.a1
pyrus_communis	pycom17g03640
rosa_chinensis	RchiOBHm_Chr2g0170301
rosa_laevigata	RLG00000021945
rosa_multiflora	Rmu_co8444867.1_g000001 Rmu_sc0012445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00081450
rosa_rugosa	Rorug02G0548100
rosa_samantha	Rh2AG619400 Rh2BG630300 Rh2CG600400 Rh2DG643200
rosa_wichuraiana	Rw2G051310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AatII	GACGTC	2 cut(s)	395, 698
Acc36I	ACCTGC	2 cut(s)	511, 1421
AccI	GTMKAC	2 cut(s)	186, 1725
AccII	CGCG	5 cut(s)	417, 500, 683, 718, 869
AciI	CCGC	5 cut(s)	498, 500, 718, 1034, 1130
AclWI	GGATC	2 cut(s)	319, 1493
AcoI	YGGCCR	3 cut(s)	541, 1327, 1531
AcsI	RAATTY	4 cut(s)	110, 1040, 1282, 1561
AcyI	GRCGYC	2 cut(s)	392, 695
AfaI	GTAC	8 cut(s)	314, 410, 530, 884, 1025, 1091, 1137, 1636
AfeI	AGCGCT	1 cut(s)	711
AfiI	CCNNNNNNNGG	2 cut(s)	345, 637
AflIII	ACRYGT	3 cut(s)	333, 615, 927
AgeI	ACCGGT	1 cut(s)	282
AgsI	TTSAA	5 cut(s)	319, 674, 1502, 1685, 1820
AjiI	CACGTC	2 cut(s)	256, 379
AjnI	CCWGG	1 cut(s)	1492
AjuI	GAANNNNNNNTTGG	6 cut(s)	1165, 1197, 1329, 1361, 1926, 1958
Alw21I	GWGCWC	1 cut(s)	1866
Alw26I	GTCTC	1 cut(s)	312
Alw44I	GTGCAC	1 cut(s)	1862
AlwI	GGATC	2 cut(s)	319, 1493
Ama87I	CYCGRG	1 cut(s)	1016
Aor51HI	AGCGCT	1 cut(s)	711
AoxI	GGCC	9 cut(s)	216, 235, 268, 541, 635, 1206, 1327, 1531, 1738
ApaLI	GTGCAC	1 cut(s)	1862
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	4 cut(s)	110, 1040, 1282, 1561
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
AsiGI	ACCGGT	1 cut(s)	282
Asp700I	GAANNNNTTC	2 cut(s)	485, 1591
AspLEI	GCGC	5 cut(s)	27, 419, 683, 712, 1659
AspS9I	GGNCC	2 cut(s)	268, 1207
AsuC2I	CCSGG	5 cut(s)	346, 406, 639, 678, 785
AsuHPI	GGTGA	6 cut(s)	160, 220, 394, 712, 1346, 1868
AsuII	TTCGAA	2 cut(s)	136, 584
AsuNHI	GCTAGC	1 cut(s)	1622
AvaI	CYCGRG	1 cut(s)	1016
BaeGI	GKGCMC	1 cut(s)	1866
BalI	TGGCCA	1 cut(s)	1329
BarI	GAAGNNNNNNTAC	2 cut(s)	1373, 1405
BbsI	GAAGAC	1 cut(s)	1802
Bbv12I	GWGCWC	1 cut(s)	1866
BbvCI	CCTCAGC	2 cut(s)	839, 845
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	4 cut(s)	451, 782, 1066, 1737
BceAI	ACGGC	3 cut(s)	203, 250, 1518
BciT130I	CCWGG	1 cut(s)	1494
BciVI	GTATCC	1 cut(s)	505
BclI	TGATCA	2 cut(s)	399, 1441
BcnI	CCSGG	5 cut(s)	346, 406, 639, 678, 785
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	7 cut(s)	1211, 1274, 1422, 1616, 1623, 1715, 1872
BfmI	CTRYAG	3 cut(s)	532, 1650, 1726
BfoI	RGCGCY	2 cut(s)	28, 713
BfuAI	ACCTGC	2 cut(s)	511, 1421
BfuI	GTATCC	1 cut(s)	505
BisI	GCNGC	2 cut(s)	34, 1131
BlsI	GCNGC	2 cut(s)	35, 1132
Bme1390I	CCNGG	6 cut(s)	346, 406, 639, 678, 785, 1494
BmeT110I	CYCGRG	1 cut(s)	1016
BmgBI	CACGTC	2 cut(s)	256, 379
BmgT120I	GGNCC	2 cut(s)	268, 1207
BmrFI	CCNGG	6 cut(s)	346, 406, 639, 678, 785, 1494
BmsI	GCATC	9 cut(s)	118, 349, 634, 750, 969, 1260, 1427, 1741, 1764
BmtI	GCTAGC	1 cut(s)	1626
BpiI	GAAGAC	1 cut(s)	1802
Bpu10I	CCTNAGC	2 cut(s)	839, 845
Bpu14I	TTCGAA	2 cut(s)	136, 584
BpuMI	CCSGG	5 cut(s)	346, 406, 639, 678, 785
BsaAI	YACGTR	1 cut(s)	882
BsaBI	GATNNNNATC	2 cut(s)	137, 585
BsaHI	GRCGYC	2 cut(s)	392, 695
BsaJI	CCNNGG	9 cut(s)	213, 232, 498, 538, 638, 1330, 1493, 1528, 1755
BsaWI	WCCGGW	2 cut(s)	282, 589
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 549, 579
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 637
Bse118I	RCCGGY	2 cut(s)	282, 543
Bse1I	ACTGG	2 cut(s)	1162, 1551
Bse3DI	GCAATG	2 cut(s)	28, 1156
Bse8I	GATNNNNATC	2 cut(s)	137, 585
BseBI	CCWGG	1 cut(s)	1494
BseDI	CCNNGG	9 cut(s)	213, 232, 498, 538, 638, 1330, 1493, 1528, 1755
BseGI	GGATG	5 cut(s)	649, 793, 984, 1383, 1753
BseJI	GATNNNNATC	2 cut(s)	137, 585
BseLI	CCNNNNNNNGG	2 cut(s)	345, 637
BseMI	GCAATG	2 cut(s)	28, 1156
BseMII	CTCAG	3 cut(s)	450, 830, 836
BseNI	ACTGG	2 cut(s)	1162, 1551
BseRI	GAGGAG	2 cut(s)	1517, 1800
BseSI	GKGCMC	1 cut(s)	1866
BseX3I	CGGCCG	2 cut(s)	541, 1531
BseXI	GCAGC	1 cut(s)	45
BseYI	CCCAGC	1 cut(s)	1538
BsgI	GTGCAG	2 cut(s)	1140, 1596
Bsh1236I	CGCG	5 cut(s)	417, 500, 683, 718, 869
Bsh1285I	CGRYCG	3 cut(s)	283, 544, 1534
BshFI	GGCC	9 cut(s)	218, 237, 270, 543, 637, 1208, 1329, 1533, 1740
BshTI	ACCGGT	1 cut(s)	282
BsiEI	CGRYCG	3 cut(s)	283, 544, 1534
BsiHKAI	GWGCWC	1 cut(s)	1866
BsiHKCI	CYCGRG	1 cut(s)	1016
BsiWI	CGTACG	1 cut(s)	882
BslFI	GGGAC	3 cut(s)	389, 817, 1914
BslI	CCNNNNNNNGG	2 cut(s)	345, 637
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	3 cut(s)	389, 817, 1914
BsnI	GGCC	9 cut(s)	218, 237, 270, 543, 637, 1208, 1329, 1533, 1740
BsoBI	CYCGRG	1 cut(s)	1016
Bsp119I	TTCGAA	2 cut(s)	136, 584
Bsp1286I	GDGCHC	1 cut(s)	1866
Bsp1407I	TGTACA	1 cut(s)	1135
Bsp143I	GATC	7 cut(s)	324, 399, 684, 1441, 1485, 1522, 1730
Bsp19I	CCATGG	1 cut(s)	1755
BspACI	CCGC	5 cut(s)	498, 500, 718, 1034, 1130
BspANI	GGCC	9 cut(s)	218, 237, 270, 543, 637, 1208, 1329, 1533, 1740
BspCNI	CTCAG	3 cut(s)	449, 831, 837
BspFNI	CGCG	5 cut(s)	417, 500, 683, 718, 869
BspMAI	CTGCAG	1 cut(s)	1654
BspMI	ACCTGC	2 cut(s)	511, 1421
BspOI	GCTAGC	1 cut(s)	1626
BspPI	GGATC	2 cut(s)	319, 1493
BspT104I	TTCGAA	2 cut(s)	136, 584
BsrDI	GCAATG	2 cut(s)	28, 1156
BsrFI	RCCGGY	2 cut(s)	282, 543
BsrGI	TGTACA	1 cut(s)	1135
BsrI	ACTGG	2 cut(s)	1162, 1551
BssAI	RCCGGY	2 cut(s)	282, 543
BssECI	CCNNGG	9 cut(s)	213, 232, 498, 538, 638, 1330, 1493, 1528, 1755
BssMI	GATC	7 cut(s)	324, 399, 684, 1441, 1485, 1522, 1730
BssNI	GRCGYC	2 cut(s)	392, 695
BssT1I	CCWWGG	3 cut(s)	213, 1330, 1755
Bst2UI	CCWGG	1 cut(s)	1494
Bst4CI	ACNGT	4 cut(s)	493, 808, 1028, 1105
Bst6I	CTCTTC	1 cut(s)	1071
BstACI	GRCGYC	2 cut(s)	392, 695
BstAUI	TGTACA	1 cut(s)	1135
BstBAI	YACGTR	1 cut(s)	882
BstBI	TTCGAA	2 cut(s)	136, 584
BstC8I	GCNNGC	8 cut(s)	302, 429, 551, 649, 653, 867, 1123, 1624
BstDEI	CTNAG	4 cut(s)	436, 839, 845, 1806
BstDSI	CCRYGG	3 cut(s)	232, 498, 1755
BstF5I	GGATG	5 cut(s)	649, 793, 984, 1383, 1753
BstFNI	CGCG	5 cut(s)	417, 500, 683, 718, 869
BstH2I	RGCGCY	2 cut(s)	28, 713
BstHHI	GCGC	5 cut(s)	27, 419, 683, 712, 1659
BstKTI	GATC	7 cut(s)	327, 402, 687, 1444, 1488, 1525, 1733
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	7 cut(s)	324, 399, 684, 1441, 1485, 1522, 1730
BstMCI	CGRYCG	3 cut(s)	283, 544, 1534
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 114, 1127
BstNI	CCWGG	1 cut(s)	1494
BstNSI	RCATGY	4 cut(s)	210, 337, 619, 931
BstSCI	CCNGG	6 cut(s)	344, 404, 637, 676, 783, 1492
BstSFI	CTRYAG	3 cut(s)	532, 1650, 1726
BstSLI	GKGCMC	1 cut(s)	1866
BstSNI	TACGTA	1 cut(s)	882
BstUI	CGCG	5 cut(s)	417, 500, 683, 718, 869
BstV1I	GCAGC	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	1802
BstZI	CGGCCG	2 cut(s)	541, 1531
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	9 cut(s)	218, 237, 270, 543, 637, 1208, 1329, 1533, 1740
BtgI	CCRYGG	3 cut(s)	232, 498, 1755
BtrI	CACGTC	2 cut(s)	256, 379
BtsCI	GGATG	5 cut(s)	649, 793, 984, 1383, 1753
BtsIMutI	CAGTG	1 cut(s)	489
BveI	ACCTGC	2 cut(s)	511, 1421
Cac8I	GCNNGC	8 cut(s)	302, 429, 551, 649, 653, 867, 1123, 1624
CfoI	GCGC	5 cut(s)	27, 419, 683, 712, 1659
Cfr10I	RCCGGY	2 cut(s)	282, 543
Cfr13I	GGNCC	2 cut(s)	268, 1207
Cfr42I	CCGCGG	1 cut(s)	501
CseI	GACGC	1 cut(s)	724
Csp6I	GTAC	8 cut(s)	313, 409, 529, 883, 1024, 1090, 1136, 1635
CspAI	ACCGGT	1 cut(s)	282
CviQI	GTAC	8 cut(s)	313, 409, 529, 883, 1024, 1090, 1136, 1635
DdeI	CTNAG	4 cut(s)	436, 839, 845, 1806
DpnI	GATC	7 cut(s)	326, 401, 686, 1443, 1487, 1524, 1732
DpnII	GATC	7 cut(s)	324, 399, 684, 1441, 1485, 1522, 1730
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	3 cut(s)	541, 1327, 1531
EagI	CGGCCG	2 cut(s)	541, 1531
Eam1104I	CTCTTC	1 cut(s)	1071
EarI	CTCTTC	1 cut(s)	1071
EclXI	CGGCCG	2 cut(s)	541, 1531
Eco105I	TACGTA	1 cut(s)	882
Eco130I	CCWWGG	3 cut(s)	213, 1330, 1755
Eco32I	GATATC	2 cut(s)	45, 384
Eco47III	AGCGCT	1 cut(s)	711
Eco52I	CGGCCG	2 cut(s)	541, 1531
Eco88I	CYCGRG	1 cut(s)	1016
EcoRII	CCWGG	1 cut(s)	1492
EcoRV	GATATC	2 cut(s)	45, 384
EcoT14I	CCWWGG	3 cut(s)	213, 1330, 1755
ErhI	CCWWGG	3 cut(s)	213, 1330, 1755
FalI	AAGNNNNNCTT	3 cut(s)	28, 1329, 1361
FaqI	GGGAC	3 cut(s)	389, 817, 1914
FauI	CCCGC	1 cut(s)	1027
FbaI	TGATCA	2 cut(s)	399, 1441
FblI	GTMKAC	2 cut(s)	186, 1725
Fnu4HI	GCNGC	2 cut(s)	34, 1131
FokI	GGATG	5 cut(s)	656, 800, 991, 1390, 1760
Fsp4HI	GCNGC	2 cut(s)	34, 1131
FspBI	CTAG	7 cut(s)	1211, 1274, 1422, 1616, 1623, 1715, 1872
GlaI	GCGC	5 cut(s)	26, 418, 682, 711, 1658
GluI	GCNGC	2 cut(s)	34, 1131
GsaI	CCCAGC	1 cut(s)	1542
HaeII	RGCGCY	2 cut(s)	28, 713
HaeIII	GGCC	9 cut(s)	218, 237, 270, 543, 637, 1208, 1329, 1533, 1740
HgaI	GACGC	1 cut(s)	724
HhaI	GCGC	5 cut(s)	27, 419, 683, 712, 1659
Hin1I	GRCGYC	2 cut(s)	392, 695
Hin6I	GCGC	5 cut(s)	25, 417, 681, 710, 1657
HinP1I	GCGC	5 cut(s)	25, 417, 681, 710, 1657
HincII	GTYRAC	1 cut(s)	925
HindII	GTYRAC	1 cut(s)	925
HphI	GGTGA	6 cut(s)	160, 220, 394, 712, 1346, 1868
Hpy166II	GTNNAC	7 cut(s)	187, 390, 795, 925, 1024, 1726, 1864
Hpy188I	TCNGA	3 cut(s)	42, 163, 340
Hpy188III	TCNNGA	4 cut(s)	292, 469, 857, 1465
Hpy8I	GTNNAC	7 cut(s)	187, 390, 795, 925, 1024, 1726, 1864
Hpy99I	CGWCG	3 cut(s)	293, 397, 700
HpyAV	CCTTC	2 cut(s)	865, 1167
HpyCH4III	ACNGT	4 cut(s)	493, 808, 1028, 1105
HpyCH4IV	ACGT	7 cut(s)	255, 378, 392, 411, 695, 797, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 114, 1127
HpyF3I	CTNAG	4 cut(s)	436, 839, 845, 1806
HpySE526I	ACGT	7 cut(s)	255, 378, 392, 411, 695, 797, 881
Hsp92I	GRCGYC	2 cut(s)	392, 695
HspAI	GCGC	5 cut(s)	25, 417, 681, 710, 1657
Ksp22I	TGATCA	2 cut(s)	399, 1441
KspI	CCGCGG	1 cut(s)	501
Kzo9I	GATC	7 cut(s)	324, 399, 684, 1441, 1485, 1522, 1730
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	9 cut(s)	118, 349, 634, 750, 969, 1260, 1427, 1741, 1764
MaeI	CTAG	7 cut(s)	1211, 1274, 1422, 1616, 1623, 1715, 1872
MaeII	ACGT	7 cut(s)	255, 378, 392, 411, 695, 797, 881
MaeIII	GTNAC	1 cut(s)	877
MalI	GATC	7 cut(s)	326, 401, 686, 1443, 1487, 1524, 1732
MboI	GATC	7 cut(s)	324, 399, 684, 1441, 1485, 1522, 1730
MhlI	GDGCHC	1 cut(s)	1866
MlsI	TGGCCA	1 cut(s)	1329
MluCI	AATT	4 cut(s)	110, 1040, 1282, 1561
MluNI	TGGCCA	1 cut(s)	1329
MlyI	GAGTC	4 cut(s)	577, 1055, 1211, 1792
MmeI	TCCRAC	3 cut(s)	671, 1163, 1941
Mox20I	TGGCCA	1 cut(s)	1329
MroXI	GAANNNNTTC	2 cut(s)	485, 1591
MscI	TGGCCA	1 cut(s)	1329
MseI	TTAA	6 cut(s)	1056, 1215, 1368, 1565, 1791, 1887
MslI	CAYNNNNRTG	2 cut(s)	1848, 1854
Msp20I	TGGCCA	1 cut(s)	1329
MspA1I	CMGCKG	1 cut(s)	500
MspR9I	CCNGG	6 cut(s)	346, 406, 639, 678, 785, 1494
MvaI	CCWGG	1 cut(s)	1494
MvnI	CGCG	5 cut(s)	417, 500, 683, 718, 869
MwoI	GCNNNNNNNGC	3 cut(s)	33, 114, 1127
NciI	CCSGG	5 cut(s)	346, 406, 639, 678, 785
NcoI	CCATGG	1 cut(s)	1755
NdeII	GATC	7 cut(s)	324, 399, 684, 1441, 1485, 1522, 1730
NheI	GCTAGC	1 cut(s)	1622
NmeAIII	GCCGAG	3 cut(s)	519, 940, 1509
NspI	RCATGY	4 cut(s)	210, 337, 619, 931
NspV	TTCGAA	2 cut(s)	136, 584
PciI	ACATGT	3 cut(s)	333, 615, 927
PcsI	WCGNNNNNNNCGW	3 cut(s)	392, 873, 1007
PdmI	GAANNNNTTC	2 cut(s)	485, 1591
PfeI	GAWTC	8 cut(s)	133, 138, 581, 586, 956, 1592, 1820, 1934
Pfl23II	CGTACG	1 cut(s)	882
PfoI	TCCNGGA	1 cut(s)	783
PinAI	ACCGGT	1 cut(s)	282
PkrI	GCNGC	2 cut(s)	35, 1132
PleI	GAGTC	4 cut(s)	576, 1054, 1210, 1792
PpsI	GAGTC	4 cut(s)	576, 1054, 1210, 1792
Ppu21I	YACGTR	1 cut(s)	882
PscI	ACATGT	3 cut(s)	333, 615, 927
Psp6I	CCWGG	1 cut(s)	1492
PspFI	CCCAGC	1 cut(s)	1538
PspGI	CCWGG	1 cut(s)	1492
PspLI	CGTACG	1 cut(s)	882
PspPI	GGNCC	2 cut(s)	268, 1207
PsrI	GAACNNNNNNTAC	2 cut(s)	1822, 1854
PstI	CTGCAG	1 cut(s)	1654
RsaI	GTAC	8 cut(s)	314, 410, 530, 884, 1025, 1091, 1137, 1636
RsaNI	GTAC	8 cut(s)	313, 409, 529, 883, 1024, 1090, 1136, 1635
RseI	CAYNNNNRTG	2 cut(s)	1848, 1854
SacII	CCGCGG	1 cut(s)	501
SaqAI	TTAA	6 cut(s)	1056, 1215, 1368, 1565, 1791, 1887
SatI	GCNGC	2 cut(s)	34, 1131
Sau3AI	GATC	7 cut(s)	324, 399, 684, 1441, 1485, 1522, 1730
Sau96I	GGNCC	2 cut(s)	268, 1207
SchI	GAGTC	4 cut(s)	577, 1055, 1211, 1792
ScrFI	CCNGG	6 cut(s)	346, 406, 639, 678, 785, 1494
SduI	GDGCHC	1 cut(s)	1866
SfaNI	GCATC	9 cut(s)	118, 349, 634, 750, 969, 1260, 1427, 1741, 1764
SfcI	CTRYAG	3 cut(s)	532, 1650, 1726
Sfr303I	CCGCGG	1 cut(s)	501
SfuI	TTCGAA	2 cut(s)	136, 584
SgrBI	CCGCGG	1 cut(s)	501
SmiMI	CAYNNNNRTG	2 cut(s)	1848, 1854
SnaBI	TACGTA	1 cut(s)	882
Sse9I	AATT	4 cut(s)	110, 1040, 1282, 1561
SsiI	CCGC	5 cut(s)	498, 500, 718, 1034, 1130
SspI	AATATT	1 cut(s)	1353
SspMI	CTAG	7 cut(s)	1211, 1274, 1422, 1616, 1623, 1715, 1872
StyD4I	CCNGG	6 cut(s)	344, 404, 637, 676, 783, 1492
StyI	CCWWGG	3 cut(s)	213, 1330, 1755
TaaI	ACNGT	4 cut(s)	493, 808, 1028, 1105
TaiI	ACGT	7 cut(s)	258, 381, 395, 414, 698, 800, 884
TaqI	TCGA	7 cut(s)	126, 136, 273, 395, 584, 856, 1301
TasI	AATT	4 cut(s)	110, 1040, 1282, 1561
TatI	WGTACW	4 cut(s)	312, 1023, 1089, 1135
TauI	GCSGC	1 cut(s)	1133
TfiI	GAWTC	8 cut(s)	133, 138, 581, 586, 956, 1592, 1820, 1934
Tru1I	TTAA	6 cut(s)	1056, 1215, 1368, 1565, 1791, 1887
Tru9I	TTAA	6 cut(s)	1056, 1215, 1368, 1565, 1791, 1887
TscAI	CASTG	1 cut(s)	496
TseI	GCWGC	1 cut(s)	33
TspDTI	ATGAA	5 cut(s)	17, 678, 1145, 1394, 1838
TspGWI	ACGGA	1 cut(s)	1941
TspRI	CASTG	1 cut(s)	496
VneI	GTGCAC	1 cut(s)	1862
XapI	RAATTY	4 cut(s)	110, 1040, 1282, 1561
XceI	RCATGY	4 cut(s)	210, 337, 619, 931
XmiI	GTMKAC	2 cut(s)	186, 1725
XmnI	GAANNNNTTC	2 cut(s)	485, 1591
XspI	CTAG	7 cut(s)	1211, 1274, 1422, 1616, 1623, 1715, 1872
ZraI	GACGTC	2 cut(s)	393, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.