Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8444867.1

Orthogroup ID

OG0007157

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1463

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8444867.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1192 bp

atgttgcactccctaactcaccttcccgcctcctctctcccgccaaaaaccctaacccaccaccaatccttctctcccttcttctccttcccccaaacccccaaaccctccaaattcactatccggagctccgccgccggcccccagaccctcgcccccaactccgccatccaacgaatcgccgagaagctccgcagcctcgggttcgccgaagacgacaccaaaaagcccgactccaaacccgacccgaactccgccggcgaaatcttcgtccctctgccggagactctccccaagtaccgcgtcgggcacaccatcgatgccagctggagcacgccggagaatccggtgccggagccggggaccgggagggcgatttcgaggtttcatgagatgaggagagagctgaggaggcagaagcaggttgaggagttggagaagaaggagaagaaagaagagagggttgctacattggccgagatgagcttgtctggggctgagctgaggcggttgaggacggttgggattgagctgaacaagaagattaaggttgggaaggctgggattactgaggggattgtgaatgggattcatgagaattggcggagatcggaggttgtgaagattgtgtgtgaggatttgtgtaggttgaacatgaagaggactcatgatttgttggagagaaaaactggagggatggttgtttggaggtcaggagcgaagatagttttgtacaggggggtgaactataagtatccttactttttgcggggtaaaaatcatgaggatttgacgagtgatggttctgttgatgcgctactggatgcacacatcagtgatggaggaacagataaagcaaactctgctacaggatcaagtccaactgacgaaagagctcagccagcgttaatacaaggggttggtttggcaaataggtttcggtttcaacttccaggtgaggcagaacttgctgaagaagctgaccgcttgttagagggacttgggccgcggtttactgattggtggggatatgaacctctccctgttgacggggaccttctaccagctattgtgcctggatacaggagacctttccgccttcttccgtatggcttgcagcctaagctaacagatgatgaaatgaccacaattaggagacttgcccgacccttgccatgtcattttgcattgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000372 GO:0000373 GO:0000375 GO:0000376 GO:0000377 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

397

Amino Acids

44.39

Weight (kDa)

9.16

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01370
fragaria_vesca	FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050 FvH4_6g50050
malus_domestica	MD17G1040600.v1.1
prunus_persica	Prupe.3G278400_v2.0.a1
pyrus_communis	pycom17g03640
rosa_chinensis	RchiOBHm_Chr2g0170301
rosa_laevigata	RLG00000021945
rosa_multiflora	Rmu_co8444867.1_g000001 Rmu_sc0012445.1_g000003
rosa_roxburghii	Rroxscaffold_2G00081450
rosa_rugosa	Rorug02G0548100
rosa_samantha	Rh2AG619400 Rh2BG630300 Rh2CG600400 Rh2DG643200
rosa_wichuraiana	Rw2G051310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	349
AccII	CGCG	2 cut(s)	303, 1009
AccIII	TCCGGA	1 cut(s)	123
AclWI	GGATC	1 cut(s)	880
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	993
AfaI	GTAC	2 cut(s)	299, 734
AfiI	CCNNNNNNNGG	5 cut(s)	280, 359, 365, 1049, 1152
AgsI	TTSAA	2 cut(s)	652, 947
AjnI	CCWGG	2 cut(s)	952, 1075
AleI	CACNNNNGTG	1 cut(s)	834
Alw21I	GWGCWC	3 cut(s)	131, 335, 898
Alw26I	GTCTC	3 cut(s)	278, 1081, 1150
AlwI	GGATC	1 cut(s)	880
Ama87I	CYCGRG	1 cut(s)	200
Aor13HI	TCCGGA	1 cut(s)	123
AoxI	GGCC	3 cut(s)	139, 474, 1004
ApeKI	GCWGC	2 cut(s)	195, 1117
ApoI	RAATTY	1 cut(s)	113
ArsI	GACNNNNNNTTYG	4 cut(s)	255, 287, 655, 687
AspLEI	GCGC	1 cut(s)	817
AspS9I	GGNCC	4 cut(s)	140, 363, 1004, 1054
AsuC2I	CCSGG	2 cut(s)	360, 367
AsuHPI	GGTGA	3 cut(s)	11, 754, 968
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	2 cut(s)	363, 1054
BaeGI	GKGCMC	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	2 cut(s)	131, 898
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	3 cut(s)	131, 335, 898
BbvCI	CCTCAGC	2 cut(s)	407, 503
BbvI	GCAGC	2 cut(s)	207, 1129
BccI	CCATC	5 cut(s)	176, 323, 691, 794, 833
BciT130I	CCWGG	2 cut(s)	954, 1077
BciVI	GTATCC	2 cut(s)	765, 1073
BcnI	CCSGG	2 cut(s)	360, 367
BcoDI	GTCTC	3 cut(s)	278, 1081, 1150
BfmI	CTRYAG	1 cut(s)	867
BfuAI	ACCTGC	1 cut(s)	412
BfuI	GTATCC	2 cut(s)	765, 1073
BisI	GCNGC	4 cut(s)	135, 196, 1007, 1118
BlpI	GCTNAGC	2 cut(s)	498, 897
BlsI	GCNGC	4 cut(s)	136, 197, 1008, 1119
Bme1390I	CCNGG	4 cut(s)	360, 367, 954, 1077
Bme18I	GGWCC	2 cut(s)	363, 1054
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	4 cut(s)	140, 363, 1004, 1054
BmiI	GGNNCC	5 cut(s)	142, 351, 357, 364, 1055
BmrFI	CCNGG	4 cut(s)	360, 367, 954, 1077
BmsI	GCATC	3 cut(s)	310, 802, 814
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	2 cut(s)	349, 711
Bpu10I	CCTNAGC	3 cut(s)	407, 503, 1122
Bpu1102I	GCTNAGC	2 cut(s)	498, 897
BpuMI	CCSGG	2 cut(s)	360, 367
Bsa29I	ATCGAT	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	1081
BsaJI	CCNNGG	3 cut(s)	199, 359, 1007
BsaWI	WCCGGW	2 cut(s)	123, 346
BsaXI	ACNNNNNCTCC	4 cut(s)	236, 266, 684, 714
Bsc4I	CCNNNNNNNGG	5 cut(s)	280, 359, 365, 1049, 1152
Bse118I	RCCGGY	2 cut(s)	137, 257
Bse1I	ACTGG	2 cut(s)	694, 825
BseAI	TCCGGA	1 cut(s)	123
BseBI	CCWGG	2 cut(s)	954, 1077
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	199, 359, 1007
BseGI	GGATG	3 cut(s)	168, 702, 829
BseLI	CCNNNNNNNGG	5 cut(s)	280, 359, 365, 1049, 1152
BseMII	CTCAG	5 cut(s)	398, 489, 494, 561, 911
BseNI	ACTGG	2 cut(s)	694, 825
BseRI	GAGGAG	4 cut(s)	22, 412, 424, 443
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	207, 1129
BseYI	CCCAGC	1 cut(s)	560
Bsh1236I	CGCG	2 cut(s)	303, 1009
BshFI	GGCC	3 cut(s)	141, 476, 1006
BshNI	GGYRCC	1 cut(s)	349
BshVI	ATCGAT	1 cut(s)	318
BsiHKAI	GWGCWC	3 cut(s)	131, 335, 898
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	9 cut(s)	124, 138, 258, 281, 338, 347, 353, 359, 366
BslFI	GGGAC	4 cut(s)	257, 376, 1011, 1067
BslI	CCNNNNNNNGG	5 cut(s)	280, 359, 365, 1049, 1152
BsmAI	GTCTC	3 cut(s)	278, 1081, 1150
BsmFI	GGGAC	4 cut(s)	257, 376, 1011, 1067
BsnI	GGCC	3 cut(s)	141, 476, 1006
Bso31I	GGTCTC	1 cut(s)	1081
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	4 cut(s)	131, 312, 335, 898
Bsp13I	TCCGGA	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	2 cut(s)	608, 872
Bsp1720I	GCTNAGC	2 cut(s)	498, 897
BspANI	GGCC	3 cut(s)	141, 476, 1006
BspCNI	CTCAG	5 cut(s)	399, 490, 495, 562, 910
BspDI	ATCGAT	1 cut(s)	318
BspEI	TCCGGA	1 cut(s)	123
BspFNI	CGCG	2 cut(s)	303, 1009
BspHI	TCATGA	4 cut(s)	388, 592, 667, 781
BspLI	GGNNCC	5 cut(s)	142, 351, 357, 364, 1055
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	1 cut(s)	880
BspT107I	GGYRCC	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	1081
BsrFI	RCCGGY	2 cut(s)	137, 257
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	2 cut(s)	694, 825
BssAI	RCCGGY	2 cut(s)	137, 257
BssECI	CCNNGG	3 cut(s)	199, 359, 1007
BssMI	GATC	2 cut(s)	608, 872
Bst2UI	CCWGG	2 cut(s)	954, 1077
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	2 cut(s)	450, 653
BstAPI	GCANNNNNTGC	2 cut(s)	863, 968
BstAUI	TGTACA	1 cut(s)	732
BstC8I	GCNNGC	6 cut(s)	139, 259, 325, 335, 903, 1115
BstDEI	CTNAG	6 cut(s)	407, 498, 503, 570, 897, 1122
BstDSI	CCRYGG	1 cut(s)	1007
BstF5I	GGATG	3 cut(s)	168, 702, 829
BstFNI	CGCG	2 cut(s)	303, 1009
BstHHI	GCGC	1 cut(s)	817
BstKTI	GATC	2 cut(s)	611, 875
BstMAI	GTCTC	3 cut(s)	278, 1081, 1150
BstMBI	GATC	2 cut(s)	608, 872
BstMWI	GCNNNNNNNGC	7 cut(s)	412, 473, 863, 902, 968, 977, 1123
BstNI	CCWGG	2 cut(s)	954, 1077
BstSCI	CCNGG	4 cut(s)	358, 365, 952, 1075
BstSFI	CTRYAG	1 cut(s)	867
BstSLI	GKGCMC	1 cut(s)	312
BstUI	CGCG	2 cut(s)	303, 1009
BstV1I	GCAGC	2 cut(s)	207, 1129
BstV2I	GAAGAC	1 cut(s)	219
Bsu15I	ATCGAT	1 cut(s)	318
BsuI	GTATCC	2 cut(s)	765, 1073
BsuRI	GGCC	3 cut(s)	141, 476, 1006
BsuTUI	ATCGAT	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	1007
BtsCI	GGATG	3 cut(s)	168, 702, 829
BtsIMutI	CAGTG	1 cut(s)	841
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	6 cut(s)	139, 259, 325, 335, 903, 1115
CciI	TCATGA	4 cut(s)	388, 592, 667, 781
CfoI	GCGC	1 cut(s)	817
Cfr10I	RCCGGY	2 cut(s)	137, 257
Cfr13I	GGNCC	4 cut(s)	140, 363, 1004, 1054
Cfr42I	CCGCGG	1 cut(s)	1010
ClaI	ATCGAT	1 cut(s)	318
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	298, 733
CviAII	CATG	6 cut(s)	389, 593, 655, 668, 782, 1176
CviQI	GTAC	2 cut(s)	298, 733
DdeI	CTNAG	6 cut(s)	407, 498, 503, 570, 897, 1122
DpnI	GATC	2 cut(s)	610, 874
DpnII	GATC	2 cut(s)	608, 872
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	2 cut(s)	450, 653
EarI	CTCTTC	2 cut(s)	450, 653
EciI	GGCGGA	5 cut(s)	121, 154, 244, 619, 1085
Ecl136II	GAGCTC	2 cut(s)	129, 896
Eco24I	GRGCYC	2 cut(s)	131, 898
Eco31I	GGTCTC	1 cut(s)	1081
Eco47I	GGWCC	2 cut(s)	363, 1054
Eco53kI	GAGCTC	2 cut(s)	129, 896
Eco57I	CTGAAG	1 cut(s)	993
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	2 cut(s)	129, 896
EcoO109I	RGGNCCY	1 cut(s)	1054
EcoRII	CCWGG	2 cut(s)	952, 1075
EcoT38I	GRGCYC	2 cut(s)	131, 898
FaeI	CATG	6 cut(s)	392, 596, 658, 671, 785, 1179
FaiI	YATR	9 cut(s)	390, 594, 656, 669, 750, 783, 1032, 1110, 1177
FaqI	GGGAC	4 cut(s)	257, 376, 1011, 1067
FatI	CATG	6 cut(s)	388, 592, 654, 667, 781, 1175
FauI	CCCGC	3 cut(s)	34, 48, 762
Fnu4HI	GCNGC	4 cut(s)	135, 196, 1007, 1118
FokI	GGATG	3 cut(s)	155, 709, 836
FriOI	GRGCYC	2 cut(s)	131, 898
Fsp4HI	GCNGC	4 cut(s)	135, 196, 1007, 1118
GlaI	GCGC	1 cut(s)	816
GluI	GCNGC	4 cut(s)	135, 196, 1007, 1118
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	2 cut(s)	349, 711
HaeIII	GGCC	3 cut(s)	141, 476, 1006
HapII	CCGG	9 cut(s)	124, 138, 258, 281, 338, 347, 353, 359, 366
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	1 cut(s)	817
Hin1II	CATG	6 cut(s)	392, 596, 658, 671, 785, 1179
Hin6I	GCGC	1 cut(s)	815
HinP1I	GCGC	1 cut(s)	815
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HinfI	GANTC	6 cut(s)	177, 233, 286, 343, 589, 664
HpaII	CCGG	9 cut(s)	124, 138, 258, 281, 338, 347, 353, 359, 366
HphI	GGTGA	3 cut(s)	11, 754, 968
Hpy166II	GTNNAC	3 cut(s)	745, 1014, 1048
Hpy188I	TCNGA	1 cut(s)	613
Hpy188III	TCNNGA	6 cut(s)	124, 389, 593, 668, 714, 782
Hpy8I	GTNNAC	3 cut(s)	745, 1014, 1048
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	8 cut(s)	32, 79, 88, 97, 436, 550, 1067, 1109
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	4 cut(s)	7, 827, 1117, 1187
HpyF10VI	GCNNNNNNNGC	7 cut(s)	412, 473, 863, 902, 968, 977, 1123
HpyF3I	CTNAG	6 cut(s)	407, 498, 503, 570, 897, 1122
Hsp92II	CATG	6 cut(s)	392, 596, 658, 671, 785, 1179
HspAI	GCGC	1 cut(s)	815
Kpn2I	TCCGGA	1 cut(s)	123
KroI	GCCGGC	2 cut(s)	137, 257
KroNI	GCCGGC	2 cut(s)	139, 259
KspI	CCGCGG	1 cut(s)	1010
Kzo9I	GATC	2 cut(s)	608, 872
LmnI	GCTCC	6 cut(s)	126, 134, 195, 330, 355, 716
Lsp1109I	GCAGC	2 cut(s)	207, 1129
LweI	GCATC	3 cut(s)	310, 802, 814
MalI	GATC	2 cut(s)	610, 874
MboI	GATC	2 cut(s)	608, 872
MhlI	GDGCHC	4 cut(s)	131, 312, 335, 898
MluCI	AATT	3 cut(s)	113, 598, 1149
MlyI	GAGTC	3 cut(s)	227, 280, 658
MmeI	TCCRAC	4 cut(s)	196, 414, 657, 905
MreI	CGCCGGCG	1 cut(s)	257
MroI	TCCGGA	1 cut(s)	123
MroNI	GCCGGC	2 cut(s)	137, 257
MseI	TTAA	2 cut(s)	546, 908
MslI	CAYNNNNRTG	1 cut(s)	834
MspA1I	CMGCKG	2 cut(s)	327, 1009
MspI	CCGG	9 cut(s)	124, 138, 258, 281, 338, 347, 353, 359, 366
MspR9I	CCNGG	4 cut(s)	360, 367, 954, 1077
MvaI	CCWGG	2 cut(s)	954, 1077
MvnI	CGCG	2 cut(s)	303, 1009
MwoI	GCNNNNNNNGC	7 cut(s)	412, 473, 863, 902, 968, 977, 1123
NaeI	GCCGGC	2 cut(s)	139, 259
NciI	CCSGG	2 cut(s)	360, 367
NdeII	GATC	2 cut(s)	608, 872
NgoMIV	GCCGGC	2 cut(s)	137, 257
NlaIII	CATG	6 cut(s)	392, 596, 658, 671, 785, 1179
NlaIV	GGNNCC	5 cut(s)	142, 351, 357, 364, 1055
NmeAIII	GCCGAG	2 cut(s)	208, 502
OliI	CACNNNNGTG	1 cut(s)	834
PagI	TCATGA	4 cut(s)	388, 592, 667, 781
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 213
PdiI	GCCGGC	2 cut(s)	139, 259
PfeI	GAWTC	3 cut(s)	177, 343, 589
PkrI	GCNGC	4 cut(s)	136, 197, 1008, 1119
PleI	GAGTC	3 cut(s)	227, 280, 658
PpsI	GAGTC	3 cut(s)	227, 280, 658
PpuMI	RGGWCCY	1 cut(s)	1054
Psp124BI	GAGCTC	2 cut(s)	131, 898
Psp5II	RGGWCCY	1 cut(s)	1054
Psp6I	CCWGG	2 cut(s)	952, 1075
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	2 cut(s)	952, 1075
PspN4I	GGNNCC	5 cut(s)	142, 351, 357, 364, 1055
PspPI	GGNCC	4 cut(s)	140, 363, 1004, 1054
PspPPI	RGGWCCY	1 cut(s)	1054
PvuII	CAGCTG	1 cut(s)	327
RsaI	GTAC	2 cut(s)	299, 734
RsaNI	GTAC	2 cut(s)	298, 733
RseI	CAYNNNNRTG	1 cut(s)	834
SacI	GAGCTC	2 cut(s)	131, 898
SacII	CCGCGG	1 cut(s)	1010
SaqAI	TTAA	2 cut(s)	546, 908
SatI	GCNGC	4 cut(s)	135, 196, 1007, 1118
Sau3AI	GATC	2 cut(s)	608, 872
Sau96I	GGNCC	4 cut(s)	140, 363, 1004, 1054
SchI	GAGTC	3 cut(s)	227, 280, 658
ScrFI	CCNGG	4 cut(s)	360, 367, 954, 1077
SduI	GDGCHC	4 cut(s)	131, 312, 335, 898
SfaNI	GCATC	3 cut(s)	310, 802, 814
SfcI	CTRYAG	1 cut(s)	867
Sfr303I	CCGCGG	1 cut(s)	1010
SgrAI	CRCCGGYG	1 cut(s)	257
SgrBI	CCGCGG	1 cut(s)	1010
SinI	GGWCC	2 cut(s)	363, 1054
SmiMI	CAYNNNNRTG	1 cut(s)	834
Sse9I	AATT	3 cut(s)	113, 598, 1149
SstI	GAGCTC	2 cut(s)	131, 898
StyD4I	CCNGG	4 cut(s)	358, 365, 952, 1075
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	2 cut(s)	318, 380
TasI	AATT	3 cut(s)	113, 598, 1149
TatI	WGTACW	1 cut(s)	732
TauI	GCSGC	2 cut(s)	137, 1009
TfiI	GAWTC	3 cut(s)	177, 343, 589
Tru1I	TTAA	2 cut(s)	546, 908
Tru9I	TTAA	2 cut(s)	546, 908
TscAI	CASTG	1 cut(s)	841
TseI	GCWGC	2 cut(s)	195, 1117
TspDTI	ATGAA	5 cut(s)	377, 581, 671, 1047, 1152
TspGWI	ACGGA	1 cut(s)	1095
TspRI	CASTG	1 cut(s)	841
VpaK11BI	GGWCC	2 cut(s)	363, 1054
XapI	RAATTY	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.