Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009766

Physical Location & Seq

Genomic Coordinates Reverse (-)

83208230 .. 83215259

Gene Structure 7030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022417

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

ATGGCTTCTTCTACTGCGTGGGCGATGCTGTTGGTGGCGGTGTTATTGGCACAGTTGCTGGCCGCAAAATCGGAGTACATAGCTTACAATACGACGGCGGGGATCGTCCCGGAGAAACTCAACGTTCATTTGGTTCCTCACTCTCACGACGACGTCGGCTGGCTTAAGACGGTGGACCAGTACTACGTGGGTGCCAACAATTCAATTCGAGGTGCTTGTGTACAGAACGTCATTGACTCTGTCATCTCTGCCTTATTGGAGGACAAGAATCGCAAGTTCATCTATGTTGAGATTGCATTCTTTCAGAGATGGTGGAGACAGCAAAGCCCTGCTATGAAGATCAAAGTCAAGGACCTGGTCCGCTCCGGTCAACTTGAGTTCATAAATGGGGGCATGTGTATGCACGACGAGGCCACCCCGCATTACATTGACTTGATTGATCAGACTACCCTAGGACATCAATTTATACTGAAAGAGTTTGGTCAGATTCCTCGAGTTGGCTGGCAGATTGATCCTTTTGGTCATTCTGCTGTTCAAGCTTACTTGCTTGGTGCTGAGTTAGGTTTCGATTCCCTCTTTTTTGCTCGAATTGATTATCAAGATAGAGCAGTCCGGCTCAGGGATAAGACTCTTGAGGTTATATGGCAGGGTTCTAAGTCCCTTGCTGCATCTTCACAGATTTTCACTGGCGTATTCCCCAGGCACTATGATCCTCCAGATGGTTTCGTATTTGAAATAAATGATGTGTCACCTCCTATTCAGGATGACATTCTCCTGTTTGACTACAATGTTCAAGAGCGAGTCAATGACTTTGTTGCAGCTGCTTTAGCTCAGGCTAATGTGACAAGAACAAATCATATTATGTGGACCATGGGGACAGATTTTCGCTACCAATATGGAAATTCATGGTTCAGGCAGATGGACAAATTCATTCACTATGTCAACCAGGCTGAAAAGTTGGTCGCCTCTTCTCTTGCTTACCTTTCTGAGTCAGAACCAAGTTCCGGACAGAAGTGCATAGCCACAAAATTTGAACAGTGCCCTCTTCTAAACATCAGTTATTGTCCTCCATCTGAAACTGCCTTATCCGATGGGAAAAGCTTGGTTGTTGTTATCTACAATCCTCTTGGTTGGAAGAGAGAGGAAGTAATACGGATCCCTGTTTCCAAGGACAGGGTCACTGTTCAGGATTCTAGCCAAAGAAAAATTGATGCGCAGCTTTTACCTCTCTCAAATGCCACTTTGAAATTAAGAAGTTACTATGTCAGAGCACATTTGGGTAATACCCCAAGTGAACCACCCAAATATTGGCTAGCCTTTTCAGTAACGGTACCACCACTTGGTTTCAGCTCTTACTTTGTCTCAAGTGCAAATCAGACAGATAAAGATCGACGCTCAACTATGTCCAAAGTATACACATCAGAAGGAAATACAAATAAGACCATACAAGTTGGGCAAGGGAGTTTAAAGCTACTTTATTCTGCAGAAGGAAAGCTTGCTCGTTATATTAACAGCAGAAATATGGTTACGGCGGTTGCTGAACAATCATATAGTTATTATACTGGAAACGATGGAACTGACAAAGATCCTCAGGCCTCTGGGGCATATGTATTTCGACCGAATAGCACAGTTGTTATAAAATCTGAAGAAAAGGTTTCTCTCACCGTGATGCAAGGCCCATTATTGGATGAAGTGCATCAGCAGATCAATCCATGGGTATCTCAGATTACGAGGTTATACAAAGGAAAGGAGCATGCTGAAGTAGAGTTCACTATTGGGCCTATACCCGTGGATGATGGTATTGGAAAAGAAATCACAACACAACTTACAACAGCGTTGAAGACCAATAAGACATTCTACACAGATTCTAATGGTCGCGACTTCATTAAGCGGATTCGAGATTTCAGGACAGATTGGGACCTACAAGTGAACCAACCAATTGCTGGAAATTATTACCCAATTAATCTTGGAATTTATGTGCAAGATAGCACTACAGAACTTTCAGTCTTGGTTGATCGTGCAGTGGGAGGATCTAGCTTGGTAGATGGTCAAGTAGAGCTGATGCTCCACAGGAGGCTAACTCATGATGATATCAGAGGTGTTGGAGAGATACTAAATGAAACAGTTTGCATTTCCGAGAAGTGTGAAGGTTTAACTATCCAAGGGAAGTTTTATGTCAGAATCGATCCTGTTGGAGAAGGTTCTAAGTGGCGTCGCACAGCTGGGCAAGAGATAAGTGCTCCACTTTTGTTGGCCTTCGCCGAACAGGAAGGAAACGATTGGATGAATTCTCATGTACCAACATTTTCTGGAATTGAACCTTCCTATGCCTTACCAGACAATGTTGCTGTGATAACCCTCCAGGAACTTGAAAATGGGAAAGTACTCCTTCGTTTGGCTCACCTATATGAGACTGGCGAGGACAAGGACTATTCTGTATTGGCAAATGTGGAACTAAGAAAGTTGTTTCCAAGGAAGAAGATCAGCAAAGTGACAGAGATGAGTTTATCTGCCAATCAAGAAAGAGCTGAAATGGAGAAGAGGAAATTAGTTTGGAAAGTGGAAGGTTCTGCCGCGGCCGAAGAGTCTAAGGTGGTGAGGGGAGGCGCTGTTGACCCTGCAAAACTGGTGGTGGAACTAGCACCAATGGAAATACGCACTTTCCTAATTGACTTGGATTACCTCCATATGAATGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005774 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009505 GO:0009987 GO:0015923 GO:0016020 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0030312 GO:0031090 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0098588 GO:0098805 GO:1901135 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

901

Amino Acids

101.06

Weight (kDa)

5.86

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	41 - 319	5.1e-79	Glycosyl hydrolases family 38 N-terminal domain
Laman-like_dom	PF21260	403 - 454	5.9e-10	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	486 - 699	2.8e-45	Glycosyl hydrolases family 38 C-terminal domain
Glyco_hydro38C2	PF17677	781 - 888	5.7e-08	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26720 AT3G26720 AT3G26720 AT3G26720 AT3G26720
fragaria_vesca	FvH4_6g54280 FvH4_6g54280 FvH4_6g54280 FvH4_6g54280
malus_domestica	MD09G1002800.v1.1
prunus_persica	Prupe.3G313400_v2.0.a1 Prupe.3G313400_v2.0.a1
pyrus_communis	pycom111g00230
rosa_chinensis	RchiOBHm_Chr2g0176491
rosa_laevigata	RLG00000022417
rosa_roxburghii	Rroxscaffold_2G00076340
rosa_rugosa	Rorug02G0595100
rosa_samantha	Rh2AG673400 Rh2BG684700 Rh2DG698300
rosa_wichuraiana	Rw2G055230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1637
AatII	GACGTC	1 cut(s)	156
Acc16I	TGCGCA	1 cut(s)	1215
Acc65I	GGTACC	1 cut(s)	1330
AccB1I	GGYRCC	2 cut(s)	191, 1330
AccB7I	CCANNNNNTGG	3 cut(s)	1308, 1340, 1943
AccBSI	CCGCTC	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	1413
AccII	CGCG	2 cut(s)	1878, 2576
AccIII	TCCGGA	1 cut(s)	1004
AciI	CCGC	9 cut(s)	38, 63, 98, 361, 419, 1532, 1891, 2574, 2576
AclI	AACGTT	1 cut(s)	123
AclWI	GGATC	8 cut(s)	110, 506, 704, 1150, 1163, 1580, 2038, 2180
AcoI	YGGCCR	2 cut(s)	60, 2577
AcsI	RAATTY	5 cut(s)	901, 926, 1028, 1971, 2287
AcuI	CTGAAG	2 cut(s)	1665, 1779
AcyI	GRCGYC	2 cut(s)	153, 2212
AfaI	GTAC	6 cut(s)	77, 182, 222, 1332, 2298, 2385
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	9 cut(s)	204, 536, 734, 794, 1034, 1246, 1840, 2318, 2372
AjnI	CCWGG	4 cut(s)	354, 698, 945, 2361
AjuI	GAANNNNNNNTTGG	2 cut(s)	1838, 1870
Alw21I	GWGCWC	2 cut(s)	1273, 2242
Alw26I	GTCTC	3 cut(s)	310, 1366, 2405
AlwI	GGATC	8 cut(s)	110, 506, 704, 1150, 1163, 1580, 2038, 2180
AlwNI	CAGNNNCTG	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	492
Aor13HI	TCCGGA	1 cut(s)	1004
AoxI	GGCC	7 cut(s)	60, 411, 1593, 1675, 1778, 2253, 2577
ApeKI	GCWGC	4 cut(s)	665, 818, 821, 1216
ApoI	RAATTY	5 cut(s)	901, 926, 1028, 1971, 2287
AseI	ATTAAT	1 cut(s)	1962
Asp718I	GGTACC	1 cut(s)	1330
AspA2I	CCTAGG	1 cut(s)	451
AspLEI	GCGC	2 cut(s)	1216, 2609
AspS9I	GGNCC	7 cut(s)	175, 352, 358, 867, 1676, 1778, 1918
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	4 cut(s)	741, 1654, 2393, 2608
AsuNHI	GCTAGC	1 cut(s)	1312
AvaI	CYCGRG	1 cut(s)	492
AvaII	GGWCC	5 cut(s)	175, 352, 358, 867, 1918
AvrII	CCTAGG	1 cut(s)	451
AxyI	CCTNAGG	1 cut(s)	1590
BaeGI	GKGCMC	1 cut(s)	1043
BamHI	GGATCC	1 cut(s)	1155
BanI	GGYRCC	2 cut(s)	191, 1330
BbsI	GAAGAC	1 cut(s)	1847
Bbv12I	GWGCWC	2 cut(s)	1273, 2242
BbvI	GCAGC	4 cut(s)	652, 808, 830, 1228
BccI	CCATC	8 cut(s)	303, 713, 913, 1078, 1085, 1565, 1790, 2039
BceAI	ACGGC	2 cut(s)	111, 1545
BciT130I	CCWGG	4 cut(s)	356, 700, 947, 2363
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	3 cut(s)	310, 1366, 2405
BfaI	CTAG	5 cut(s)	452, 1194, 1313, 2034, 2639
BfmI	CTRYAG	2 cut(s)	1482, 1992
BfoI	RGCGCY	1 cut(s)	2610
BfrI	CTTAAG	1 cut(s)	164
BglI	GCCNNNNNGGC	1 cut(s)	1601
BisI	GCNGC	7 cut(s)	63, 666, 819, 822, 1217, 2574, 2577
BlnI	CCTAGG	1 cut(s)	451
BlsI	GCNGC	7 cut(s)	64, 667, 820, 823, 1218, 2575, 2578
BmcAI	AGTACT	2 cut(s)	182, 2385
Bme1390I	CCNGG	5 cut(s)	110, 356, 700, 947, 2363
Bme18I	GGWCC	5 cut(s)	175, 352, 358, 867, 1918
BmeT110I	CYCGRG	1 cut(s)	492
BmgT120I	GGNCC	7 cut(s)	175, 352, 358, 867, 1676, 1778, 1918
BmiI	GGNNCC	6 cut(s)	135, 193, 1157, 1332, 1919, 2698
BmrFI	CCNGG	5 cut(s)	110, 356, 700, 947, 2363
BmsI	GCATC	6 cut(s)	15, 677, 1201, 1659, 1705, 2052
BmtI	GCTAGC	1 cut(s)	1316
BpiI	GAAGAC	1 cut(s)	1847
BplI	GAGNNNNNCTC	2 cut(s)	2065, 2097
BpmI	CTGGAG	2 cut(s)	699, 2345
Bpu10I	CCTNAGC	2 cut(s)	617, 831
BpuEI	CTTGAG	3 cut(s)	395, 653, 1348
BpuMI	CCSGG	1 cut(s)	110
Bsa29I	ATCGAT	1 cut(s)	2184
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	1386
BsaHI	GRCGYC	2 cut(s)	153, 2212
BsaJI	CCNNGG	9 cut(s)	451, 698, 870, 1167, 1712, 1788, 2161, 2471, 2574
BsaWI	WCCGGW	2 cut(s)	365, 1004
BsaXI	ACNNNNNCTCC	2 cut(s)	2595, 2625
Bse1I	ACTGG	5 cut(s)	178, 691, 1567, 2419, 2631
Bse21I	CCTNAGG	1 cut(s)	1590
Bse8I	GATNNNNATC	1 cut(s)	1386
BseAI	TCCGGA	1 cut(s)	1004
BseBI	CCWGG	4 cut(s)	356, 700, 947, 2363
BseCI	ATCGAT	1 cut(s)	2184
BseDI	CCNNGG	9 cut(s)	451, 698, 870, 1167, 1712, 1788, 2161, 2471, 2574
BseGI	GGATG	4 cut(s)	769, 1693, 1798, 2289
BseJI	GATNNNNATC	1 cut(s)	1386
BseMII	CTCAG	6 cut(s)	546, 631, 845, 978, 1604, 1736
BseNI	ACTGG	5 cut(s)	178, 691, 1567, 2419, 2631
BseSI	GKGCMC	1 cut(s)	1043
BseX3I	CGGCCG	1 cut(s)	2577
BseXI	GCAGC	4 cut(s)	652, 808, 830, 1228
BseYI	CCCAGC	1 cut(s)	2222
BsgI	GTGCAG	1 cut(s)	2040
Bsh1236I	CGCG	2 cut(s)	1878, 2576
Bsh1285I	CGRYCG	2 cut(s)	1619, 2580
BshFI	GGCC	7 cut(s)	62, 413, 1595, 1677, 1780, 2255, 2579
BshNI	GGYRCC	2 cut(s)	191, 1330
BshVI	ATCGAT	1 cut(s)	2184
BsiEI	CGRYCG	2 cut(s)	1619, 2580
BsiHKAI	GWGCWC	2 cut(s)	1273, 2242
BsiHKCI	CYCGRG	1 cut(s)	492
BsiSI	CCGG	4 cut(s)	110, 366, 613, 1005
BslFI	GGGAC	4 cut(s)	92, 643, 889, 1931
BsmAI	GTCTC	3 cut(s)	310, 1366, 2405
BsmFI	GGGAC	4 cut(s)	92, 643, 889, 1931
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	7 cut(s)	62, 413, 1595, 1677, 1780, 2255, 2579
BsoBI	CYCGRG	1 cut(s)	492
Bsp1286I	GDGCHC	3 cut(s)	1043, 1273, 2242
Bsp13I	TCCGGA	1 cut(s)	1004
Bsp1407I	TGTACA	1 cut(s)	220
Bsp19I	CCATGG	2 cut(s)	870, 1712
Bsp68I	TCGCGA	1 cut(s)	1878
BspACI	CCGC	9 cut(s)	38, 63, 98, 361, 419, 1532, 1891, 2574, 2576
BspANI	GGCC	7 cut(s)	62, 413, 1595, 1677, 1780, 2255, 2579
BspCNI	CTCAG	6 cut(s)	547, 630, 844, 979, 1603, 1735
BspDI	ATCGAT	1 cut(s)	2184
BspEI	TCCGGA	1 cut(s)	1004
BspFNI	CGCG	2 cut(s)	1878, 2576
BspHI	TCATGA	1 cut(s)	2083
BspLI	GGNNCC	6 cut(s)	135, 193, 1157, 1332, 1919, 2698
BspMAI	CTGCAG	1 cut(s)	1486
BspOI	GCTAGC	1 cut(s)	1316
BspPI	GGATC	8 cut(s)	110, 506, 704, 1150, 1163, 1580, 2038, 2180
BspT107I	GGYRCC	2 cut(s)	191, 1330
BspTI	CTTAAG	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	5 cut(s)	178, 691, 1567, 2419, 2631
BssECI	CCNNGG	9 cut(s)	451, 698, 870, 1167, 1712, 1788, 2161, 2471, 2574
BssNAI	GTATAC	1 cut(s)	1414
BssNI	GRCGYC	2 cut(s)	153, 2212
BssT1I	CCWWGG	6 cut(s)	451, 870, 1167, 1712, 2161, 2471
Bst1107I	GTATAC	1 cut(s)	1414
Bst2UI	CCWGG	4 cut(s)	356, 700, 947, 2363
Bst4CI	ACNGT	8 cut(s)	54, 172, 1038, 1183, 1330, 1630, 1666, 2125
Bst6I	CTCTTC	5 cut(s)	973, 1050, 1130, 2534, 2577
BstACI	GRCGYC	2 cut(s)	153, 2212
BstAFI	CTTAAG	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	220
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	6 cut(s)	60, 161, 503, 1314, 1497, 1755
BstDSI	CCRYGG	4 cut(s)	870, 1712, 1788, 2574
BstF5I	GGATG	4 cut(s)	769, 1693, 1798, 2289
BstFNI	CGCG	2 cut(s)	1878, 2576
BstH2I	RGCGCY	1 cut(s)	2610
BstHHI	GCGC	2 cut(s)	1216, 2609
BstMAI	GTCTC	3 cut(s)	310, 1366, 2405
BstMCI	CGRYCG	2 cut(s)	1619, 2580
BstMWI	GCNNNNNNNGC	3 cut(s)	536, 827, 1601
BstNI	CCWGG	4 cut(s)	356, 700, 947, 2363
BstNSI	RCATGY	2 cut(s)	397, 1757
BstSCI	CCNGG	5 cut(s)	108, 354, 698, 945, 2361
BstSFI	CTRYAG	2 cut(s)	1482, 1992
BstSLI	GKGCMC	1 cut(s)	1043
BstUI	CGCG	2 cut(s)	1878, 2576
BstV1I	GCAGC	4 cut(s)	652, 808, 830, 1228
BstV2I	GAAGAC	1 cut(s)	1847
BstX2I	RGATCY	3 cut(s)	1155, 1585, 2030
BstXI	CCANNNNNNTGG	1 cut(s)	2693
BstYI	RGATCY	3 cut(s)	1155, 1585, 2030
BstZ17I	GTATAC	1 cut(s)	1414
BstZI	CGGCCG	1 cut(s)	2577
Bsu15I	ATCGAT	1 cut(s)	2184
Bsu36I	CCTNAGG	1 cut(s)	1590
BsuRI	GGCC	7 cut(s)	62, 413, 1595, 1677, 1780, 2255, 2579
BsuTUI	ATCGAT	1 cut(s)	2184
BtgI	CCRYGG	4 cut(s)	870, 1712, 1788, 2574
BtgZI	GCGATG	1 cut(s)	38
BtsCI	GGATG	4 cut(s)	769, 1693, 1798, 2289
BtsI	GCAGTG	1 cut(s)	2028
BtsIMutI	CAGTG	4 cut(s)	684, 1043, 1179, 2028
BtuMI	TCGCGA	1 cut(s)	1878
Cac8I	GCNNGC	6 cut(s)	60, 161, 503, 1314, 1497, 1755
CaiI	CAGNNNCTG	1 cut(s)	58
CciI	TCATGA	1 cut(s)	2083
CfoI	GCGC	2 cut(s)	1216, 2609
Cfr13I	GGNCC	7 cut(s)	175, 352, 358, 867, 1676, 1778, 1918
Cfr42I	CCGCGG	1 cut(s)	2577
ClaI	ATCGAT	1 cut(s)	2184
CseI	GACGC	2 cut(s)	1401, 2201
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	6 cut(s)	76, 181, 221, 1331, 2297, 2384
CspCI	CAANNNNNGTGG	6 cut(s)	1012, 1047, 2232, 2267, 2610, 2645
CviAII	CATG	7 cut(s)	394, 871, 906, 1713, 1754, 2084, 2294
CviQI	GTAC	6 cut(s)	76, 181, 221, 1331, 2297, 2384
DraI	TTTAAA	1 cut(s)	1467
EaeI	YGGCCR	2 cut(s)	60, 2577
EagI	CGGCCG	1 cut(s)	2577
Eam1104I	CTCTTC	5 cut(s)	973, 1050, 1130, 2534, 2577
EarI	CTCTTC	5 cut(s)	973, 1050, 1130, 2534, 2577
EclXI	CGGCCG	1 cut(s)	2577
Eco130I	CCWWGG	6 cut(s)	451, 870, 1167, 1712, 2161, 2471
Eco147I	AGGCCT	1 cut(s)	1595
Eco32I	GATATC	1 cut(s)	2092
Eco47I	GGWCC	5 cut(s)	175, 352, 358, 867, 1918
Eco52I	CGGCCG	1 cut(s)	2577
Eco57I	CTGAAG	2 cut(s)	1665, 1779
Eco81I	CCTNAGG	1 cut(s)	1590
Eco88I	CYCGRG	1 cut(s)	492
EcoO109I	RGGNCCY	2 cut(s)	352, 1918
EcoRI	GAATTC	1 cut(s)	2287
EcoRII	CCWGG	4 cut(s)	354, 698, 945, 2361
EcoRV	GATATC	1 cut(s)	2092
EcoT14I	CCWWGG	6 cut(s)	451, 870, 1167, 1712, 2161, 2471
ErhI	CCWWGG	6 cut(s)	451, 870, 1167, 1712, 2161, 2471
FaeI	CATG	7 cut(s)	397, 874, 909, 1716, 1757, 2087, 2297
FalI	AAGNNNNNCTT	4 cut(s)	1479, 1511, 2373, 2405
FaqI	GGGAC	4 cut(s)	92, 643, 889, 1931
FatI	CATG	7 cut(s)	393, 870, 905, 1712, 1753, 2083, 2293
FauI	CCCGC	2 cut(s)	91, 426
FauNDI	CATATG	2 cut(s)	1606, 2688
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	1413
Fnu4HI	GCNGC	7 cut(s)	63, 666, 819, 822, 1217, 2574, 2577
FokI	GGATG	4 cut(s)	776, 1700, 1805, 2296
Fsp4HI	GCNGC	7 cut(s)	63, 666, 819, 822, 1217, 2574, 2577
FspBI	CTAG	5 cut(s)	452, 1194, 1313, 2034, 2639
FspI	TGCGCA	1 cut(s)	1215
GlaI	GCGC	2 cut(s)	1215, 2608
GluI	GCNGC	7 cut(s)	63, 666, 819, 822, 1217, 2574, 2577
GsaI	CCCAGC	1 cut(s)	2226
GsuI	CTGGAG	2 cut(s)	699, 2345
HaeII	RGCGCY	1 cut(s)	2610
HaeIII	GGCC	7 cut(s)	62, 413, 1595, 1677, 1780, 2255, 2579
HapII	CCGG	4 cut(s)	110, 366, 613, 1005
HgaI	GACGC	2 cut(s)	1401, 2201
HhaI	GCGC	2 cut(s)	1216, 2609
Hin1I	GRCGYC	2 cut(s)	153, 2212
Hin1II	CATG	7 cut(s)	397, 874, 909, 1716, 1757, 2087, 2297
Hin6I	GCGC	2 cut(s)	1214, 2607
HinP1I	GCGC	2 cut(s)	1214, 2607
HincII	GTYRAC	3 cut(s)	371, 943, 2614
HindII	GTYRAC	3 cut(s)	371, 943, 2614
HindIII	AAGCTT	3 cut(s)	537, 1099, 1493
HpaII	CCGG	4 cut(s)	110, 366, 613, 1005
HphI	GGTGA	4 cut(s)	741, 1654, 2393, 2608
Hpy99I	CGWCG	7 cut(s)	97, 152, 155, 158, 410, 1395, 2217
HpyAV	CCTTC	9 cut(s)	1418, 1481, 2141, 2192, 2264, 2266, 2331, 2399, 2558
HpyCH4III	ACNGT	8 cut(s)	54, 172, 1038, 1183, 1330, 1630, 1666, 2125
HpyCH4IV	ACGT	4 cut(s)	123, 153, 186, 228
HpyF10VI	GCNNNNNNNGC	3 cut(s)	536, 827, 1601
HpySE526I	ACGT	4 cut(s)	123, 153, 186, 228
Hsp92I	GRCGYC	2 cut(s)	153, 2212
Hsp92II	CATG	7 cut(s)	397, 874, 909, 1716, 1757, 2087, 2297
HspAI	GCGC	2 cut(s)	1214, 2607
Kpn2I	TCCGGA	1 cut(s)	1004
KpnI	GGTACC	1 cut(s)	1334
Ksp22I	TGATCA	1 cut(s)	439
KspI	CCGCGG	1 cut(s)	2577
LmnI	GCTCC	4 cut(s)	368, 1750, 2070, 2245
Lsp1109I	GCAGC	4 cut(s)	652, 808, 830, 1228
LweI	GCATC	6 cut(s)	15, 677, 1201, 1659, 1705, 2052
MabI	ACCWGGT	1 cut(s)	354
MaeI	CTAG	5 cut(s)	452, 1194, 1313, 2034, 2639
MaeII	ACGT	4 cut(s)	123, 153, 186, 228
MaeIII	GTNAC	7 cut(s)	747, 841, 1177, 1256, 1324, 1525, 2491
MbiI	CCGCTC	1 cut(s)	363
MfeI	CAATTG	1 cut(s)	1938
MflI	RGATCY	3 cut(s)	1155, 1585, 2030
MhlI	GDGCHC	3 cut(s)	1043, 1273, 2242
MlyI	GAGTC	5 cut(s)	230, 622, 810, 998, 2594
MmeI	TCCRAC	3 cut(s)	1112, 2083, 2173
MroI	TCCGGA	1 cut(s)	1004
MseI	TTAA	7 cut(s)	165, 1250, 1466, 1509, 1887, 1962, 2153
MslI	CAYNNNNRTG	4 cut(s)	398, 1667, 2406, 2691
MspA1I	CMGCKG	3 cut(s)	821, 2222, 2576
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	4 cut(s)	110, 366, 613, 1005
MspR9I	CCNGG	5 cut(s)	110, 356, 700, 947, 2363
MunI	CAATTG	1 cut(s)	1938
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	4 cut(s)	356, 700, 947, 2363
MvnI	CGCG	2 cut(s)	1878, 2576
MwoI	GCNNNNNNNGC	3 cut(s)	536, 827, 1601
NciI	CCSGG	1 cut(s)	110
NcoI	CCATGG	2 cut(s)	870, 1712
NdeI	CATATG	2 cut(s)	1606, 2688
NheI	GCTAGC	1 cut(s)	1312
NlaIII	CATG	7 cut(s)	397, 874, 909, 1716, 1757, 2087, 2297
NlaIV	GGNNCC	6 cut(s)	135, 193, 1157, 1332, 1919, 2698
NmuCI	GTSAC	4 cut(s)	747, 841, 1177, 2491
NruI	TCGCGA	1 cut(s)	1878
NsbI	TGCGCA	1 cut(s)	1215
NspI	RCATGY	2 cut(s)	397, 1757
PaeI	GCATGC	1 cut(s)	1757
PaeR7I	CTCGAG	1 cut(s)	492
PagI	TCATGA	1 cut(s)	2083
PceI	AGGCCT	1 cut(s)	1595
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	7 cut(s)	268, 487, 569, 1190, 1865, 1894, 2181
PflFI	GACNNNGTC	4 cut(s)	152, 239, 356, 1175
PflMI	CCANNNNNTGG	3 cut(s)	1308, 1340, 1943
PfoI	TCCNGGA	2 cut(s)	108, 2361
PkrI	GCNGC	7 cut(s)	64, 667, 820, 823, 1218, 2575, 2578
PleI	GAGTC	5 cut(s)	230, 622, 809, 997, 2593
PpsI	GAGTC	5 cut(s)	230, 622, 809, 997, 2593
Ppu21I	YACGTR	1 cut(s)	187
PpuMI	RGGWCCY	2 cut(s)	352, 1918
PshBI	ATTAAT	1 cut(s)	1962
PsiI	TTATAA	1 cut(s)	1637
Psp1406I	AACGTT	1 cut(s)	123
Psp5II	RGGWCCY	2 cut(s)	352, 1918
Psp6I	CCWGG	4 cut(s)	354, 698, 945, 2361
PspFI	CCCAGC	1 cut(s)	2222
PspGI	CCWGG	4 cut(s)	354, 698, 945, 2361
PspN4I	GGNNCC	6 cut(s)	135, 193, 1157, 1332, 1919, 2698
PspPI	GGNCC	7 cut(s)	175, 352, 358, 867, 1676, 1778, 1918
PspPPI	RGGWCCY	2 cut(s)	352, 1918
PspXI	VCTCGAGB	1 cut(s)	492
PstI	CTGCAG	1 cut(s)	1486
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	3 cut(s)	1155, 1585, 2030
PsyI	GACNNNGTC	4 cut(s)	152, 239, 356, 1175
PvuII	CAGCTG	2 cut(s)	821, 2222
RruI	TCGCGA	1 cut(s)	1878
RsaI	GTAC	6 cut(s)	77, 182, 222, 1332, 2298, 2385
RsaNI	GTAC	6 cut(s)	76, 181, 221, 1331, 2297, 2384
RseI	CAYNNNNRTG	4 cut(s)	398, 1667, 2406, 2691
SacII	CCGCGG	1 cut(s)	2577
SaqAI	TTAA	7 cut(s)	165, 1250, 1466, 1509, 1887, 1962, 2153
SatI	GCNGC	7 cut(s)	63, 666, 819, 822, 1217, 2574, 2577
Sau96I	GGNCC	7 cut(s)	175, 352, 358, 867, 1676, 1778, 1918
ScaI	AGTACT	2 cut(s)	182, 2385
SchI	GAGTC	5 cut(s)	230, 622, 810, 998, 2594
ScrFI	CCNGG	5 cut(s)	110, 356, 700, 947, 2363
SduI	GDGCHC	3 cut(s)	1043, 1273, 2242
SexAI	ACCWGGT	1 cut(s)	354
SfaNI	GCATC	6 cut(s)	15, 677, 1201, 1659, 1705, 2052
SfcI	CTRYAG	2 cut(s)	1482, 1992
Sfr274I	CTCGAG	1 cut(s)	492
Sfr303I	CCGCGG	1 cut(s)	2577
SgrBI	CCGCGG	1 cut(s)	2577
SinI	GGWCC	5 cut(s)	175, 352, 358, 867, 1918
SlaI	CTCGAG	1 cut(s)	492
SmiMI	CAYNNNNRTG	4 cut(s)	398, 1667, 2406, 2691
SmlI	CTYRAG	5 cut(s)	164, 374, 492, 632, 1363
SmoI	CTYRAG	5 cut(s)	164, 374, 492, 632, 1363
SphI	GCATGC	1 cut(s)	1757
SseBI	AGGCCT	1 cut(s)	1595
SsiI	CCGC	9 cut(s)	38, 63, 98, 361, 419, 1532, 1891, 2574, 2576
SspI	AATATT	1 cut(s)	1307
SspMI	CTAG	5 cut(s)	452, 1194, 1313, 2034, 2639
StuI	AGGCCT	1 cut(s)	1595
StyD4I	CCNGG	5 cut(s)	108, 354, 698, 945, 2361
StyI	CCWWGG	6 cut(s)	451, 870, 1167, 1712, 2161, 2471
TaaI	ACNGT	8 cut(s)	54, 172, 1038, 1183, 1330, 1630, 1666, 2125
TaiI	ACGT	4 cut(s)	126, 156, 189, 231
TaqI	TCGA	8 cut(s)	208, 493, 567, 586, 1390, 1615, 1897, 2184
TaqII	GACCGA	1 cut(s)	1633
TatI	WGTACW	4 cut(s)	75, 180, 220, 2383
TauI	GCSGC	3 cut(s)	65, 2576, 2579
TfiI	GAWTC	7 cut(s)	268, 487, 569, 1190, 1865, 1894, 2181
Tru1I	TTAA	7 cut(s)	165, 1250, 1466, 1509, 1887, 1962, 2153
Tru9I	TTAA	7 cut(s)	165, 1250, 1466, 1509, 1887, 1962, 2153
TscAI	CASTG	4 cut(s)	691, 1043, 1186, 2028
TseFI	GTSAC	4 cut(s)	747, 841, 1177, 2491
TseI	GCWGC	4 cut(s)	665, 818, 821, 1216
Tsp45I	GTSAC	4 cut(s)	747, 841, 1177, 2491
TspGWI	ACGGA	1 cut(s)	1168
TspRI	CASTG	4 cut(s)	691, 1043, 1186, 2028
Tth111I	GACNNNGTC	4 cut(s)	152, 239, 356, 1175
Van91I	CCANNNNNTGG	3 cut(s)	1308, 1340, 1943
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	5 cut(s)	175, 352, 358, 867, 1918
VspI	ATTAAT	1 cut(s)	1962
XapI	RAATTY	5 cut(s)	901, 926, 1028, 1971, 2287
XceI	RCATGY	2 cut(s)	397, 1757
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1305, 1940
XhoI	CTCGAG	1 cut(s)	492
XmaJI	CCTAGG	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	1413
XspI	CTAG	5 cut(s)	452, 1194, 1313, 2034, 2639
ZraI	GACGTC	1 cut(s)	154
ZrmI	AGTACT	2 cut(s)	182, 2385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.