RLG00000024186

Pistil-specific extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017690
Physical Location & Seq
Forward (+)
32885649 .. 32888040
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024186

Sequence Viewer

Length: 1689 bp
ATGGAGGGAAACAGTCAAGAGATGAGTGCTGATGAATATTTTCGTTCTCTTCCACCTGGTTATCGATTCAACCCTGCTGATGGAGAGTTGATTCTAAATTATTTGAACCGAAAGATCTTGAATCAGCCACTTCCCTGTAACAGGATCCATGACATAAATATTTACCAATACCATCCCCAAGAGCTTTCAAAGATGTTCGACATAATTAGAGAAGATGGCTGGTATTTTTTCAGTAAAAGGGACCGAAAGTATCTGAATGGGACTCGGCCAAATCGTGCAGCTCGTGGTGGACGTTGGAAGGCAACTGGAAGTGAAGTAAATATCATTGATGAAAATGGTGAACTAATTGGACACAAAAAAGTTCTGGAATTTAAAAAAGGGACACATAAACAAGATATAAAGACGGAATGGAAAATGCATGAATATAGAATTAAGGATGAGAAGGAAGACATTCCTCGTCCAAAGAGGAAAAAAGGTGAAGGAAATATGAAGTTGGATACTGTTTTGTGCAAAATCTATTTAAATACCAGAGACAATGGAAATACGGATGAGAAAGATGCAGTCATTACAGAAACTTCTGATCAAGGAATTATGATTACAAATGCTGGTTCATCTCATGACAATAAGATATCAGTACTTAAGCAGGGAGTTGGTCAAGTTCAACCTCTTGATTCATCATTAATGATGAGCACCATGCAACCACAGGTCCATAAAAATACTACCAGAGGATTCAACAATGTGGATCGCATATCCAATTCTTCCACAATACCCGATTGTTTTTATTCGTTGACTTCTATGAGCAACGGAATTATGGTTACAGACACTGTTACATCTCATGACAAAGATATATCGGCACTTGAGCACGGACATGGTCAACTTCAAGCTCTTGGTTCCTCACTGATGTGCAGCCTGCAACCACAGGTCCATACTACCGGAGGATTCAAGAATATGGATCACATATCCAATTCTTCCACAGTACCCAACATTTGTTTTTATTCATCAAATTCGATGAACGGAATTATGGTTACAGATACGGTTACATTTCATGATAAAGATATATCAGCACTTAAGCAGGGAGCTGGTCAAGTTCAACCTCTTGATTCCTCACTGATGTGCAGCCTGCAACCGCAGGTCCATAACGATACTACCGGAGGATTCAACAATATGTATCACGTATCCAATTCTTCCACAATACCCGACAATTGTTTTTATTCGTCAACTTCAATGAGCAACGGAGTATGTGACTCTACACAGTGTACACATCATGGTGGGTCTATGACAAATGGAGCTTCTGGCTCCGGGTATCGGTGGGGATCCTTCACCCAGCTCCATCATCAAAACTATAAGAATTACAGCATGTCCTCGGAGCAGATGCCCTCATCTTCGACGTGGTATCCTTCTGAGCATCCCTTGCAATATTCAACAGAGATTTGGACACAATCCGAGAATGAAAATCATGAGATGCCTCAAGTGGATGATTCAACTTCAGTATCGTTACCTGCCCCGTACATAGAATATGAGTCTATGCTTGTCAACAAGGAAGAAGCTGATATCACGCCTGTTCAGCATGCCAATAAGGACGAAGCTGATGATGATGGATTACAGTTTCTTAGCATTCTAGATGAAGTTCATGAAAATGATTCCAAATTGGCGTCATTTGATGACGAAATTAACAGTGGACTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

563

Amino Acids

63.06

Weight (kDa)

5.32

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 144 9.1e-38 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g17240
rosa_chinensis RchiOBHm_Chr3g0471331
rosa_laevigata RLG00000024186
rosa_multiflora Rmu_sc0010513.1_g000010 Rmu_sc0015755.1_g000003
rosa_roxburghii Rroxscaffold_6G00410050
rosa_rugosa Rorug03G0117200
rosa_samantha Rh3AG166800 Rh3BG192200 Rh3CG182500 Rh3DG183600
rosa_wichuraiana Rw3G015690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1120, 1507
AciI CCGC 1 cut(s) 1127
AclWI GGATC 6 cut(s) 139, 152, 750, 960, 1308, 1321
AcoI YGGCCR 1 cut(s) 266
AcsI RAATTY 2 cut(s) 368, 1003
AcuI CTGAAG 1 cut(s) 1470
AcyI GRCGYC 1 cut(s) 1652
AfaI GTAC 4 cut(s) 636, 978, 1258, 1508
AfiI CCNNNNNNNGG 3 cut(s) 80, 141, 1305
AflII CTTAAG 2 cut(s) 638, 1067
AjiI CACGTC 1 cut(s) 1389
AjnI CCWGG 1 cut(s) 55
AleI CACNNNNGTG 2 cut(s) 901, 1111
AluBI AGCT 8 cut(s) 184, 281, 884, 1079, 1289, 1327, 1547, 1586
AluI AGCT 8 cut(s) 184, 281, 884, 1079, 1289, 1327, 1547, 1586
Alw21I GWGCWC 2 cut(s) 692, 864
Alw26I GTCTC 1 cut(s) 525
AlwI GGATC 6 cut(s) 139, 152, 750, 960, 1308, 1321
AlwNI CAGNNNCTG 1 cut(s) 824
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 3 cut(s) 278, 906, 1116
ApoI RAATTY 2 cut(s) 368, 1003
AseI ATTAAT 1 cut(s) 680
Asp700I GAANNNNTTC 2 cut(s) 39, 450
AspS9I GGNCC 4 cut(s) 241, 706, 922, 1132
AsuC2I CCSGG 1 cut(s) 1300
AsuHPI GGTGA 3 cut(s) 350, 488, 1312
AvaII GGWCC 4 cut(s) 241, 706, 922, 1132
BaeI ACNNNNGTAYC 2 cut(s) 1473, 1506
BamHI GGATCC 2 cut(s) 144, 1313
BauI CACGAG 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 2 cut(s) 692, 864
BbvI GCAGC 3 cut(s) 290, 918, 1128
BccI CCATC 5 cut(s) 74, 180, 209, 1338, 1589
BciT130I CCWGG 1 cut(s) 57
BciVI GTATCC 3 cut(s) 490, 1186, 1404
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 1 cut(s) 1300
BcoDI GTCTC 1 cut(s) 525
BfaI CTAG 1 cut(s) 1619
BfrI CTTAAG 2 cut(s) 638, 1067
BfuAI ACCTGC 2 cut(s) 1120, 1507
BfuI GTATCC 3 cut(s) 490, 1186, 1404
BglII AGATCT 1 cut(s) 114
BisI GCNGC 3 cut(s) 279, 907, 1117
BlsI GCNGC 3 cut(s) 280, 908, 1118
BmcAI AGTACT 1 cut(s) 636
Bme1390I CCNGG 2 cut(s) 57, 1300
Bme18I GGWCC 4 cut(s) 241, 706, 922, 1132
BmgBI CACGTC 1 cut(s) 1389
BmgT120I GGNCC 4 cut(s) 241, 706, 922, 1132
BmiI GGNNCC 5 cut(s) 146, 242, 892, 1297, 1315
BmrFI CCNGG 2 cut(s) 57, 1300
BmsI GCATC 4 cut(s) 547, 1362, 1414, 1452
BpiI GAAGAC 1 cut(s) 453
BpuEI CTTGAG 2 cut(s) 878, 1452
BpuMI CCSGG 1 cut(s) 1300
Bsa29I ATCGAT 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 1174
BsaHI GRCGYC 1 cut(s) 1652
BsaJI CCNNGG 1 cut(s) 1362
BsaWI WCCGGW 2 cut(s) 932, 1148
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 141, 1305
Bse1I ACTGG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 1362
BseGI GGATG 5 cut(s) 172, 442, 553, 1405, 1480
BseLI CCNNNNNNNGG 3 cut(s) 80, 141, 1305
BseMII CTCAG 1 cut(s) 1392
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 3 cut(s) 290, 918, 1128
BseYI CCCAGC 1 cut(s) 1323
BsgI GTGCAG 3 cut(s) 297, 925, 1135
BshFI GGCC 1 cut(s) 268
BshVI ATCGAT 1 cut(s) 64
BsiHKAI GWGCWC 2 cut(s) 692, 864
BsiSI CCGG 3 cut(s) 933, 1149, 1299
BslFI GGGAC 3 cut(s) 254, 274, 394
BslI CCNNNNNNNGG 3 cut(s) 80, 141, 1305
BsmAI GTCTC 1 cut(s) 525
BsmFI GGGAC 3 cut(s) 254, 274, 394
BsmI GAATGC 1 cut(s) 1614
BsnI GGCC 1 cut(s) 268
Bsp1286I GDGCHC 2 cut(s) 692, 864
Bsp1407I TGTACA 1 cut(s) 1256
Bsp143I GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
BspACI CCGC 1 cut(s) 1127
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 1393
BspDI ATCGAT 1 cut(s) 64
BspHI TCATGA 5 cut(s) 616, 835, 1045, 1456, 1630
BspLI GGNNCC 5 cut(s) 146, 242, 892, 1297, 1315
BspMI ACCTGC 2 cut(s) 1120, 1507
BspPI GGATC 6 cut(s) 139, 152, 750, 960, 1308, 1321
BspTI CTTAAG 2 cut(s) 638, 1067
BsrGI TGTACA 1 cut(s) 1256
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 1362
BssMI GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
BssNI GRCGYC 1 cut(s) 1652
BssSI CACGAG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 8 cut(s) 14, 502, 826, 976, 1036, 1254, 1605, 1676
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 1652
BstAFI CTTAAG 2 cut(s) 638, 1067
BstAPI GCANNNNNTGC 1 cut(s) 1411
BstAUI TGTACA 1 cut(s) 1256
BstBAI YACGTR 1 cut(s) 1174
BstC8I GCNNGC 3 cut(s) 911, 1121, 1569
BstDEI CTNAG 2 cut(s) 1401, 1610
BstENI CCTNNNNNAGG 1 cut(s) 139
BstF5I GGATG 5 cut(s) 172, 442, 553, 1405, 1480
BstKTI GATC 6 cut(s) 117, 147, 583, 745, 955, 1316
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
BstMWI GCNNNNNNNGC 2 cut(s) 1411, 1564
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 2 cut(s) 1360, 1571
BstSCI CCNGG 2 cut(s) 55, 1298
BstV1I GCAGC 3 cut(s) 290, 918, 1128
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 3 cut(s) 114, 144, 1313
BstYI RGATCY 3 cut(s) 114, 144, 1313
Bsu15I ATCGAT 1 cut(s) 64
BsuI GTATCC 3 cut(s) 490, 1186, 1404
BsuRI GGCC 1 cut(s) 268
BsuTUI ATCGAT 1 cut(s) 64
BtrI CACGTC 1 cut(s) 1389
BtsCI GGATG 5 cut(s) 172, 442, 553, 1405, 1480
BtsIMutI CAGTG 5 cut(s) 822, 896, 1106, 1259, 1681
BveI ACCTGC 2 cut(s) 1120, 1507
Cac8I GCNNGC 3 cut(s) 911, 1121, 1569
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 5 cut(s) 616, 835, 1045, 1456, 1630
Cfr13I GGNCC 4 cut(s) 241, 706, 922, 1132
ClaI ATCGAT 1 cut(s) 64
CseI GACGC 1 cut(s) 1641
CsiI ACCWGGT 1 cut(s) 55
Csp6I GTAC 4 cut(s) 635, 977, 1257, 1507
CviQI GTAC 4 cut(s) 635, 977, 1257, 1507
DdeI CTNAG 2 cut(s) 1401, 1610
DpnI GATC 6 cut(s) 116, 146, 582, 744, 954, 1315
DpnII GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
DraI TTTAAA 2 cut(s) 373, 522
EaeI YGGCCR 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco32I GATATC 2 cut(s) 630, 1552
Eco47I GGWCC 4 cut(s) 241, 706, 922, 1132
Eco57I CTGAAG 1 cut(s) 1470
EcoNI CCTNNNNNAGG 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 55
EcoRV GATATC 2 cut(s) 630, 1552
EcoT22I ATGCAT 1 cut(s) 420
FaqI GGGAC 3 cut(s) 254, 274, 394
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 3 cut(s) 279, 907, 1117
FokI GGATG 5 cut(s) 159, 449, 560, 1392, 1487
Fsp4HI GCNGC 3 cut(s) 279, 907, 1117
FspBI CTAG 1 cut(s) 1619
GluI GCNGC 3 cut(s) 279, 907, 1117
GsaI CCCAGC 1 cut(s) 1327
HaeIII GGCC 1 cut(s) 268
HapII CCGG 3 cut(s) 933, 1149, 1299
HgaI GACGC 1 cut(s) 1641
Hin1I GRCGYC 1 cut(s) 1652
HincII GTYRAC 4 cut(s) 789, 875, 1218, 1534
HindII GTYRAC 4 cut(s) 789, 875, 1218, 1534
HpaII CCGG 3 cut(s) 933, 1149, 1299
HphI GGTGA 3 cut(s) 350, 488, 1312
Hpy166II GTNNAC 9 cut(s) 290, 341, 789, 875, 1218, 1257, 1259, 1534, 1679
Hpy188I TCNGA 5 cut(s) 255, 580, 1366, 1402, 1444
Hpy8I GTNNAC 9 cut(s) 290, 341, 789, 875, 1218, 1257, 1259, 1534, 1679
Hpy99I CGWCG 1 cut(s) 1390
HpyAV CCTTC 5 cut(s) 292, 436, 473, 1327, 1407
HpyCH4III ACNGT 8 cut(s) 14, 502, 826, 976, 1036, 1254, 1605, 1676
HpyCH4IV ACGT 3 cut(s) 292, 1173, 1388
HpyF10VI GCNNNNNNNGC 2 cut(s) 1411, 1564
HpyF3I CTNAG 2 cut(s) 1401, 1610
HpySE526I ACGT 3 cut(s) 292, 1173, 1388
Hsp92I GRCGYC 1 cut(s) 1652
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
LmnI GCTCC 5 cut(s) 1076, 1286, 1301, 1332, 1366
Lsp1109I GCAGC 3 cut(s) 290, 918, 1128
LweI GCATC 4 cut(s) 547, 1362, 1414, 1452
MabI ACCWGGT 1 cut(s) 55
MaeI CTAG 1 cut(s) 1619
MaeII ACGT 3 cut(s) 292, 1173, 1388
MaeIII GTNAC 7 cut(s) 137, 814, 826, 1024, 1036, 1241, 1494
MalI GATC 6 cut(s) 116, 146, 582, 744, 954, 1315
MboI GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
MboII GAAGA 8 cut(s) 41, 224, 458, 750, 960, 1176, 1374, 1553
MfeI CAATTG 1 cut(s) 1201
MflI RGATCY 3 cut(s) 114, 144, 1313
MhlI GDGCHC 2 cut(s) 692, 864
MlyI GAGTC 3 cut(s) 256, 1238, 1529
MmeI TCCRAC 2 cut(s) 275, 474
Mph1103I ATGCAT 1 cut(s) 420
MroXI GAANNNNTTC 2 cut(s) 39, 450
MseI TTAA 7 cut(s) 372, 432, 521, 639, 680, 1068, 1671
MslI CAYNNNNRTG 5 cut(s) 867, 901, 1111, 1266, 1635
MspCI CTTAAG 2 cut(s) 638, 1067
MspI CCGG 3 cut(s) 933, 1149, 1299
MspR9I CCNGG 2 cut(s) 57, 1300
MunI CAATTG 1 cut(s) 1201
Mva1269I GAATGC 1 cut(s) 1614
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 1411, 1564
NciI CCSGG 1 cut(s) 1300
NdeII GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
NlaIV GGNNCC 5 cut(s) 146, 242, 892, 1297, 1315
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 1241
NsiI ATGCAT 1 cut(s) 420
NspI RCATGY 2 cut(s) 1360, 1571
OliI CACNNNNGTG 2 cut(s) 901, 1111
PaeI GCATGC 1 cut(s) 1571
PagI TCATGA 5 cut(s) 616, 835, 1045, 1456, 1630
PcsI WCGNNNNNNNCGW 3 cut(s) 271, 280, 289
PctI GAATGC 1 cut(s) 1614
PdmI GAANNNNTTC 2 cut(s) 39, 450
PflFI GACNNNGTC 1 cut(s) 870
PkrI GCNGC 3 cut(s) 280, 908, 1118
PleI GAGTC 3 cut(s) 256, 1238, 1528
PpsI GAGTC 3 cut(s) 256, 1238, 1528
Ppu21I YACGTR 1 cut(s) 1174
PshBI ATTAAT 1 cut(s) 680
Psp6I CCWGG 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 1323
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 5 cut(s) 146, 242, 892, 1297, 1315
PspPI GGNCC 4 cut(s) 241, 706, 922, 1132
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 3 cut(s) 114, 144, 1313
PsyI GACNNNGTC 1 cut(s) 870
RsaI GTAC 4 cut(s) 636, 978, 1258, 1508
RsaNI GTAC 4 cut(s) 635, 977, 1257, 1507
RseI CAYNNNNRTG 5 cut(s) 867, 901, 1111, 1266, 1635
SaqAI TTAA 7 cut(s) 372, 432, 521, 639, 680, 1068, 1671
SatI GCNGC 3 cut(s) 279, 907, 1117
Sau3AI GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
Sau96I GGNCC 4 cut(s) 241, 706, 922, 1132
ScaI AGTACT 1 cut(s) 636
SchI GAGTC 3 cut(s) 256, 1238, 1529
ScrFI CCNGG 2 cut(s) 57, 1300
SduI GDGCHC 2 cut(s) 692, 864
SexAI ACCWGGT 1 cut(s) 55
SfaNI GCATC 4 cut(s) 547, 1362, 1414, 1452
SinI GGWCC 4 cut(s) 241, 706, 922, 1132
SmiI ATTTAAAT 1 cut(s) 522
SmiMI CAYNNNNRTG 5 cut(s) 867, 901, 1111, 1266, 1635
SmlI CTYRAG 4 cut(s) 638, 857, 1067, 1467
SmoI CTYRAG 4 cut(s) 638, 857, 1067, 1467
SphI GCATGC 1 cut(s) 1571
SsiI CCGC 1 cut(s) 1127
SspI AATATT 3 cut(s) 38, 160, 1418
SspMI CTAG 1 cut(s) 1619
StyD4I CCNGG 2 cut(s) 55, 1298
SwaI ATTTAAAT 1 cut(s) 522
TaaI ACNGT 8 cut(s) 14, 502, 826, 976, 1036, 1254, 1605, 1676
TaiI ACGT 3 cut(s) 295, 1176, 1391
TaqI TCGA 4 cut(s) 64, 198, 1007, 1385
TaqII GACCGA 1 cut(s) 258
TatI WGTACW 2 cut(s) 634, 1256
Tru1I TTAA 7 cut(s) 372, 432, 521, 639, 680, 1068, 1671
Tru9I TTAA 7 cut(s) 372, 432, 521, 639, 680, 1068, 1671
TscAI CASTG 5 cut(s) 829, 903, 1113, 1259, 1681
TseFI GTSAC 1 cut(s) 1241
TseI GCWGC 3 cut(s) 278, 906, 1116
Tsp45I GTSAC 1 cut(s) 1241
TspGWI ACGGA 6 cut(s) 419, 560, 819, 879, 1029, 1248
TspRI CASTG 5 cut(s) 829, 903, 1113, 1259, 1681
Tth111I GACNNNGTC 1 cut(s) 870
Vha464I CTTAAG 2 cut(s) 638, 1067
VpaK11BI GGWCC 4 cut(s) 241, 706, 922, 1132
VspI ATTAAT 1 cut(s) 680
XagI CCTNNNNNAGG 1 cut(s) 139
XapI RAATTY 2 cut(s) 368, 1003
XbaI TCTAGA 1 cut(s) 1618
XceI RCATGY 2 cut(s) 1360, 1571
XmnI GAANNNNTTC 2 cut(s) 39, 450
XspI CTAG 1 cut(s) 1619
ZrmI AGTACT 1 cut(s) 636
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.