Rh3DG183600

Pistil-specific extensin-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
16275541 .. 16278282
2742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG183600.1

Sequence Viewer

Length: 1677 bp
ATGGAGGGAAACAGTCAAGAGATGAGTGCCGATGAATATTTTCGCTCTCTTCCACCTGGTTATCGATTCAACCCTACTGATGGAGAGTTGATTCTAAATTATTTGAACCGAAAGATCTTGAATCAGCCACTTCCCCGTAACAGGATCCATGACACAAATATTTACCAATACCATCCCCAAGAACTTTCAAAGATGTTCGACATAATTAGAGAAGATGGCTGGTATTTTTTCAGTAAAAGGGACCGAAAGTATCTAAATGGGACTCGGCCAAATCGTGCAGCTCGTGGTGGACATTGGAAGGCAACTGGAAGTGAAGTAAATATCATTGATGAAAATGGTGAACTAATTGGACACAAAAAAGTTCTCGAATTTAAAAAAGGGAGACATAAACAAGAAATAAAGACGGAATGGAAAATGCATGAATATAGAATTAAGGATGAGAAGGAAGACATTCCTCGTCCAAAGAGGAAAAAAGGTGAAGGAAATATGCAGTTGGATACTGTTTTGTGCAAAATCTATTTAAATACCAGAGGCAATGGTAATACGGATGAGAAAGATGCAGTCACTACAGAAACTTCTGATCAAGGAATTATGGTTACAGATGGTGGTACATCTCATGACAATGATATATCAGTACTTAAGCAAGTTCAACCTCTTGATTCATTATTAATGATGAGCAGCATGCAACCACAGGTCCATAATAATACTACCGGAGGATTCAACAATGTGGATCGCATATCCAATTCTTCCACAATACCCGATTGTTTTTATTCGTCGACTTCGATGAATAACGGAATTATGGTTACAGACACTGTTACATCTCATGACAAAGATATATCAGTAATTGAGCACGGACCTGGTCCACTTCAACCTCTTCGTTCCTCACTGATGTGCAGCCTGCAACCACAGGTCCATACTACCGGAGGATTCAAGAATATGGATCAAATATCCAATTCTTCCACGGTACCCAACATTTGTTTTTATTCATCAAATTCGATGAACGGAATTATGGTTACAGATACTGTTACATTTCATGATAAAGATATATCGGTACTTAAGCAGGGAGCTGGTCAAGTTCAACCTCTTGGTTCCTCACTGATGTGCAGCCTGCAACCGCAGGTCCATAATAATACTACCGGAGGATTCAACAATATGTATCACATATCCAATTCTTCCACAATACCCGACAATTGTTTTTATTCGTCAACTCCAATGAGCAACGGAGTATGTGACTCTACACAGTGTACGCATCATGGTGGGTCTATGTCAAATGGAGCTTCTGGCTCCGGGTATCGGTGGGGATCCTTCACCCAGCTCCATCATCAAAACTATAAGAATTACAGCATGTCCTCGGAGCAGATGCCCTCATCTTCGACGTGGTATCCTTCTGAGCATCCCTTGCAATATCCAACAGAGATTTGGACACAATCGGAGCCTGAAAATCATGAGATGCCTCAAGTGGATGATTCAACTTCAGTATCGTTACCTGCCCGATACATAAAATATGAGTCTATGCTTGTCAACAAGGAAGAAGCTGATATCATGCCTGTTCAGCATGCCAATAAGGACGAAGCTGATGAAGATGGATTACAGTTTCTTAGCATTCCAGATGAAGTTCATAAAAATGATTCCAAATTGGCGTCATTTGATGACGAAATTAACAGTGGACTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

558

Amino Acids

62.78

Weight (kDa)

5.48

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 144 1.5e-38 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017690)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1108, 1495
Acc65I GGTACC 1 cut(s) 964
AccB1I GGYRCC 1 cut(s) 964
AccI GTMKAC 1 cut(s) 776
AciI CCGC 1 cut(s) 1115
AclWI GGATC 6 cut(s) 139, 152, 738, 948, 1296, 1309
AcoI YGGCCR 1 cut(s) 266
AcsI RAATTY 2 cut(s) 368, 991
AcuI CTGAAG 1 cut(s) 1458
AcyI GRCGYC 1 cut(s) 1640
AfaI GTAC 5 cut(s) 610, 636, 966, 1053, 1246
AfiI CCNNNNNNNGG 3 cut(s) 80, 141, 1293
AflII CTTAAG 2 cut(s) 638, 1055
AjiI CACGTC 1 cut(s) 1377
AjnI CCWGG 2 cut(s) 55, 856
AleI CACNNNNGTG 2 cut(s) 889, 1099
AluBI AGCT 6 cut(s) 281, 1067, 1277, 1315, 1535, 1574
AluI AGCT 6 cut(s) 281, 1067, 1277, 1315, 1535, 1574
Alw21I GWGCWC 1 cut(s) 852
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 6 cut(s) 139, 152, 738, 948, 1296, 1309
AlwNI CAGNNNCTG 2 cut(s) 812, 1022
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 4 cut(s) 278, 678, 894, 1104
ApoI RAATTY 2 cut(s) 368, 991
AseI ATTAAT 1 cut(s) 668
Asp700I GAANNNNTTC 2 cut(s) 39, 450
Asp718I GGTACC 1 cut(s) 964
AspS9I GGNCC 6 cut(s) 241, 694, 854, 860, 910, 1120
AsuC2I CCSGG 1 cut(s) 1288
AsuHPI GGTGA 3 cut(s) 350, 488, 1300
AvaII GGWCC 6 cut(s) 241, 694, 854, 860, 910, 1120
BaeI ACNNNNGTAYC 2 cut(s) 1461, 1494
BamHI GGATCC 2 cut(s) 144, 1301
BanI GGYRCC 1 cut(s) 964
BarI GAAGNNNNNNTAC 2 cut(s) 1572, 1604
BauI CACGAG 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 852
BbvI GCAGC 4 cut(s) 290, 690, 906, 1116
BccI CCATC 6 cut(s) 74, 180, 209, 596, 1326, 1577
BciT130I CCWGG 2 cut(s) 57, 858
BciVI GTATCC 2 cut(s) 490, 1392
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 1 cut(s) 1288
BcoDI GTCTC 1 cut(s) 376
BfmI CTRYAG 1 cut(s) 567
BfrI CTTAAG 2 cut(s) 638, 1055
BfuAI ACCTGC 2 cut(s) 1108, 1495
BfuI GTATCC 2 cut(s) 490, 1392
BglII AGATCT 1 cut(s) 114
BisI GCNGC 4 cut(s) 279, 679, 895, 1105
BlsI GCNGC 4 cut(s) 280, 680, 896, 1106
BmcAI AGTACT 1 cut(s) 636
Bme1390I CCNGG 3 cut(s) 57, 858, 1288
Bme18I GGWCC 6 cut(s) 241, 694, 854, 860, 910, 1120
BmgBI CACGTC 1 cut(s) 1377
BmgT120I GGNCC 6 cut(s) 241, 694, 854, 860, 910, 1120
BmiI GGNNCC 7 cut(s) 146, 242, 966, 1090, 1285, 1303, 1434
BmrFI CCNGG 3 cut(s) 57, 858, 1288
BmsI GCATC 5 cut(s) 547, 1258, 1350, 1402, 1440
BpiI GAAGAC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 1440
BpuMI CCSGG 1 cut(s) 1288
Bsa29I ATCGAT 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 1640
BsaJI CCNNGG 2 cut(s) 960, 1350
BsaWI WCCGGW 3 cut(s) 710, 920, 1136
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 141, 1293
Bse1I ACTGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 541
BseBI CCWGG 2 cut(s) 57, 858
BseCI ATCGAT 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 960, 1350
BseGI GGATG 5 cut(s) 172, 442, 553, 1393, 1468
BseLI CCNNNNNNNGG 3 cut(s) 80, 141, 1293
BseMI GCAATG 1 cut(s) 541
BseMII CTCAG 1 cut(s) 1380
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 4 cut(s) 290, 690, 906, 1116
BseYI CCCAGC 1 cut(s) 1311
BsgI GTGCAG 3 cut(s) 297, 913, 1123
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 964
BshVI ATCGAT 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 852
BsiSI CCGG 4 cut(s) 711, 921, 1137, 1287
BslFI GGGAC 2 cut(s) 254, 274
BslI CCNNNNNNNGG 3 cut(s) 80, 141, 1293
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 2 cut(s) 254, 274
BsmI GAATGC 1 cut(s) 1602
BsnI GGCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 852
Bsp143I GATC 6 cut(s) 114, 144, 580, 730, 940, 1301
BspACI CCGC 1 cut(s) 1115
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 1381
BspDI ATCGAT 1 cut(s) 64
BspHI TCATGA 4 cut(s) 616, 823, 1033, 1444
BspLI GGNNCC 7 cut(s) 146, 242, 966, 1090, 1285, 1303, 1434
BspMI ACCTGC 2 cut(s) 1108, 1495
BspPI GGATC 6 cut(s) 139, 152, 738, 948, 1296, 1309
BspT107I GGYRCC 1 cut(s) 964
BspTI CTTAAG 2 cut(s) 638, 1055
BsrDI GCAATG 1 cut(s) 541
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 960, 1350
BssMI GATC 6 cut(s) 114, 144, 580, 730, 940, 1301
BssNI GRCGYC 1 cut(s) 1640
BssSI CACGAG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 57, 858
Bst4CI ACNGT 8 cut(s) 14, 502, 814, 964, 1024, 1242, 1593, 1664
Bst6I CTCTTC 2 cut(s) 54, 879
BstACI GRCGYC 1 cut(s) 1640
BstAFI CTTAAG 2 cut(s) 638, 1055
BstAPI GCANNNNNTGC 1 cut(s) 1399
BstC8I GCNNGC 4 cut(s) 683, 899, 1109, 1557
BstDEI CTNAG 2 cut(s) 1389, 1598
BstDSI CCRYGG 1 cut(s) 960
BstF5I GGATG 5 cut(s) 172, 442, 553, 1393, 1468
BstKTI GATC 6 cut(s) 117, 147, 583, 733, 943, 1304
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 6 cut(s) 114, 144, 580, 730, 940, 1301
BstMWI GCNNNNNNNGC 2 cut(s) 1399, 1552
BstNI CCWGG 2 cut(s) 57, 858
BstNSI RCATGY 3 cut(s) 685, 1348, 1559
BstSCI CCNGG 3 cut(s) 55, 856, 1286
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 4 cut(s) 290, 690, 906, 1116
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 3 cut(s) 114, 144, 1301
BstYI RGATCY 3 cut(s) 114, 144, 1301
Bsu15I ATCGAT 1 cut(s) 64
BsuI GTATCC 2 cut(s) 490, 1392
BsuRI GGCC 1 cut(s) 268
BsuTUI ATCGAT 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 960
BtrI CACGTC 1 cut(s) 1377
BtsCI GGATG 5 cut(s) 172, 442, 553, 1393, 1468
BtsIMutI CAGTG 5 cut(s) 810, 884, 1094, 1247, 1669
BveI ACCTGC 2 cut(s) 1108, 1495
Cac8I GCNNGC 4 cut(s) 683, 899, 1109, 1557
CaiI CAGNNNCTG 2 cut(s) 812, 1022
CciI TCATGA 4 cut(s) 616, 823, 1033, 1444
Cfr13I GGNCC 6 cut(s) 241, 694, 854, 860, 910, 1120
ClaI ATCGAT 1 cut(s) 64
CseI GACGC 1 cut(s) 1629
CsiI ACCWGGT 2 cut(s) 55, 856
Csp6I GTAC 5 cut(s) 609, 635, 965, 1052, 1245
CviQI GTAC 5 cut(s) 609, 635, 965, 1052, 1245
DdeI CTNAG 2 cut(s) 1389, 1598
DpnI GATC 6 cut(s) 116, 146, 582, 732, 942, 1303
DpnII GATC 6 cut(s) 114, 144, 580, 730, 940, 1301
DraI TTTAAA 2 cut(s) 373, 522
EaeI YGGCCR 1 cut(s) 266
Eam1104I CTCTTC 2 cut(s) 54, 879
EarI CTCTTC 2 cut(s) 54, 879
Eco32I GATATC 1 cut(s) 1540
Eco47I GGWCC 6 cut(s) 241, 694, 854, 860, 910, 1120
Eco57I CTGAAG 1 cut(s) 1458
EcoRII CCWGG 2 cut(s) 55, 856
EcoRV GATATC 1 cut(s) 1540
EcoT22I ATGCAT 1 cut(s) 420
FaqI GGGAC 2 cut(s) 254, 274
FbaI TGATCA 1 cut(s) 580
FblI GTMKAC 1 cut(s) 776
Fnu4HI GCNGC 4 cut(s) 279, 679, 895, 1105
FokI GGATG 5 cut(s) 159, 449, 560, 1380, 1475
Fsp4HI GCNGC 4 cut(s) 279, 679, 895, 1105
GluI GCNGC 4 cut(s) 279, 679, 895, 1105
GsaI CCCAGC 1 cut(s) 1315
HaeIII GGCC 1 cut(s) 268
HapII CCGG 4 cut(s) 711, 921, 1137, 1287
HgaI GACGC 1 cut(s) 1629
Hin1I GRCGYC 1 cut(s) 1640
HincII GTYRAC 3 cut(s) 777, 1206, 1522
HindII GTYRAC 3 cut(s) 777, 1206, 1522
HpaII CCGG 4 cut(s) 711, 921, 1137, 1287
HphI GGTGA 3 cut(s) 350, 488, 1300
Hpy166II GTNNAC 8 cut(s) 290, 341, 777, 863, 1206, 1245, 1522, 1667
Hpy188I TCNGA 4 cut(s) 580, 1354, 1390, 1432
Hpy8I GTNNAC 8 cut(s) 290, 341, 777, 863, 1206, 1245, 1522, 1667
Hpy99I CGWCG 2 cut(s) 778, 1378
HpyAV CCTTC 5 cut(s) 292, 436, 473, 1315, 1395
HpyCH4III ACNGT 8 cut(s) 14, 502, 814, 964, 1024, 1242, 1593, 1664
HpyCH4IV ACGT 1 cut(s) 1376
HpyF10VI GCNNNNNNNGC 2 cut(s) 1399, 1552
HpyF3I CTNAG 2 cut(s) 1389, 1598
HpySE526I ACGT 1 cut(s) 1376
Hsp92I GRCGYC 1 cut(s) 1640
KpnI GGTACC 1 cut(s) 968
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 6 cut(s) 114, 144, 580, 730, 940, 1301
LmnI GCTCC 6 cut(s) 1064, 1274, 1289, 1320, 1354, 1432
Lsp1109I GCAGC 4 cut(s) 290, 690, 906, 1116
LweI GCATC 5 cut(s) 547, 1258, 1350, 1402, 1440
MabI ACCWGGT 2 cut(s) 55, 856
MaeII ACGT 1 cut(s) 1376
MaeIII GTNAC 9 cut(s) 137, 562, 595, 802, 814, 1012, 1024, 1229, 1482
MalI GATC 6 cut(s) 116, 146, 582, 732, 942, 1303
MboI GATC 6 cut(s) 114, 144, 580, 730, 940, 1301
MfeI CAATTG 1 cut(s) 1189
MflI RGATCY 3 cut(s) 114, 144, 1301
MhlI GDGCHC 1 cut(s) 852
MlyI GAGTC 3 cut(s) 256, 1226, 1517
MmeI TCCRAC 2 cut(s) 474, 1433
Mph1103I ATGCAT 1 cut(s) 420
MroXI GAANNNNTTC 2 cut(s) 39, 450
MseI TTAA 7 cut(s) 372, 432, 521, 639, 668, 1056, 1659
MslI CAYNNNNRTG 5 cut(s) 621, 889, 1099, 1254, 1623
MspCI CTTAAG 2 cut(s) 638, 1055
MspI CCGG 4 cut(s) 711, 921, 1137, 1287
MspR9I CCNGG 3 cut(s) 57, 858, 1288
MunI CAATTG 1 cut(s) 1189
Mva1269I GAATGC 1 cut(s) 1602
MvaI CCWGG 2 cut(s) 57, 858
MwoI GCNNNNNNNGC 2 cut(s) 1399, 1552
NciI CCSGG 1 cut(s) 1288
NdeII GATC 6 cut(s) 114, 144, 580, 730, 940, 1301
NlaIV GGNNCC 7 cut(s) 146, 242, 966, 1090, 1285, 1303, 1434
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 2 cut(s) 562, 1229
NsiI ATGCAT 1 cut(s) 420
NspI RCATGY 3 cut(s) 685, 1348, 1559
OliI CACNNNNGTG 2 cut(s) 889, 1099
PaeI GCATGC 2 cut(s) 685, 1559
PagI TCATGA 4 cut(s) 616, 823, 1033, 1444
PcsI WCGNNNNNNNCGW 3 cut(s) 271, 280, 779
PctI GAATGC 1 cut(s) 1602
PdmI GAANNNNTTC 2 cut(s) 39, 450
PfeI GAWTC 9 cut(s) 66, 91, 121, 659, 717, 927, 1143, 1466, 1628
PflFI GACNNNGTC 1 cut(s) 858
PkrI GCNGC 4 cut(s) 280, 680, 896, 1106
PleI GAGTC 3 cut(s) 256, 1226, 1516
PpsI GAGTC 3 cut(s) 256, 1226, 1516
PshBI ATTAAT 1 cut(s) 668
Psp6I CCWGG 2 cut(s) 55, 856
PspFI CCCAGC 1 cut(s) 1311
PspGI CCWGG 2 cut(s) 55, 856
PspN4I GGNNCC 7 cut(s) 146, 242, 966, 1090, 1285, 1303, 1434
PspPI GGNCC 6 cut(s) 241, 694, 854, 860, 910, 1120
PstNI CAGNNNCTG 2 cut(s) 812, 1022
PsuI RGATCY 3 cut(s) 114, 144, 1301
PsyI GACNNNGTC 1 cut(s) 858
RsaI GTAC 5 cut(s) 610, 636, 966, 1053, 1246
RsaNI GTAC 5 cut(s) 609, 635, 965, 1052, 1245
RseI CAYNNNNRTG 5 cut(s) 621, 889, 1099, 1254, 1623
SalI GTCGAC 1 cut(s) 775
SaqAI TTAA 7 cut(s) 372, 432, 521, 639, 668, 1056, 1659
SatI GCNGC 4 cut(s) 279, 679, 895, 1105
Sau3AI GATC 6 cut(s) 114, 144, 580, 730, 940, 1301
Sau96I GGNCC 6 cut(s) 241, 694, 854, 860, 910, 1120
ScaI AGTACT 1 cut(s) 636
SchI GAGTC 3 cut(s) 256, 1226, 1517
ScrFI CCNGG 3 cut(s) 57, 858, 1288
SduI GDGCHC 1 cut(s) 852
SexAI ACCWGGT 2 cut(s) 55, 856
SfaNI GCATC 5 cut(s) 547, 1258, 1350, 1402, 1440
SfcI CTRYAG 1 cut(s) 567
SinI GGWCC 6 cut(s) 241, 694, 854, 860, 910, 1120
SmiI ATTTAAAT 1 cut(s) 522
SmiMI CAYNNNNRTG 5 cut(s) 621, 889, 1099, 1254, 1623
SmlI CTYRAG 3 cut(s) 638, 1055, 1455
SmoI CTYRAG 3 cut(s) 638, 1055, 1455
SphI GCATGC 2 cut(s) 685, 1559
SsiI CCGC 1 cut(s) 1115
SspI AATATT 2 cut(s) 38, 160
StyD4I CCNGG 3 cut(s) 55, 856, 1286
SwaI ATTTAAAT 1 cut(s) 522
TaaI ACNGT 8 cut(s) 14, 502, 814, 964, 1024, 1242, 1593, 1664
TaiI ACGT 1 cut(s) 1379
TaqI TCGA 7 cut(s) 64, 198, 366, 776, 782, 995, 1373
TaqII GACCGA 1 cut(s) 258
TatI WGTACW 1 cut(s) 634
TfiI GAWTC 9 cut(s) 66, 91, 121, 659, 717, 927, 1143, 1466, 1628
Tru1I TTAA 7 cut(s) 372, 432, 521, 639, 668, 1056, 1659
Tru9I TTAA 7 cut(s) 372, 432, 521, 639, 668, 1056, 1659
TscAI CASTG 5 cut(s) 817, 891, 1101, 1247, 1669
TseFI GTSAC 2 cut(s) 562, 1229
TseI GCWGC 4 cut(s) 278, 678, 894, 1104
Tsp45I GTSAC 2 cut(s) 562, 1229
TspGWI ACGGA 6 cut(s) 419, 560, 807, 867, 1017, 1236
TspRI CASTG 5 cut(s) 817, 891, 1101, 1247, 1669
Tth111I GACNNNGTC 1 cut(s) 858
Vha464I CTTAAG 2 cut(s) 638, 1055
VpaK11BI GGWCC 6 cut(s) 241, 694, 854, 860, 910, 1120
VspI ATTAAT 1 cut(s) 668
XapI RAATTY 2 cut(s) 368, 991
XceI RCATGY 3 cut(s) 685, 1348, 1559
XcmI CCANNNNNNNNNTGG 1 cut(s) 1416
XmiI GTMKAC 1 cut(s) 776
XmnI GAANNNNTTC 2 cut(s) 39, 450
ZrmI AGTACT 1 cut(s) 636
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.