Rw3G015690

Pistil-specific extensin-like protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
16251758 .. 16254152
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G015690.1

Sequence Viewer

Length: 1689 bp
ATGGAGGGAAACAGTCAAGAGATGAGTGCCGATGAATATTTTCGCTCTCTTCCACCTGGTTATCGATTCAACCCTACTGATGGAGAGTTGATTCTAAATTATTTGAACCGAAAGATCTTGAATCAGCCGCTTCCCCGTAACAGGATCCATGACATAAATATTTACCAATACCATCCCCAAGAACTTTCAAAGATGTTCGACATAATTAGAGAAGATGGCTGGTATTTTTTCAGTAAAAGGGACCGAAAGTATCTAAATGGGACTCGGCCAAATCGTGCAGCTCGTGGTGGACGTTGGAAGGCAACTGGAAGTGAAGTAAATATCATTGATGAAAATGGTGAACTAATTGGACACAAAAAAGTTCTCGAATTTAAAAAAGGGAGACATAAACAAGATATAAAGACGGAATGGAAAATGCATGAATATAGAATTAAGGATGAGAAGGAAGACATTCCTCGTCCAAAGAGGAAAAAAGGTGAAGGAAATATGCAGTTGGATACTGTTTTGTGCAAAATCTATTTAAATACCAGAGGCAATGGTAATACGGATGAGAAAGATGCAGTCACTACAGAAACTTCTGATCAAGGAATTATGGTTACAGATGCTGGTACATCTCATGACAATGATATATCAGTACTTAAGCAGGGAGTTGGTCAAGTTCAACCTCTTGATTCATTATTAATGATGAGCAGCATGCAACCACAGGTCCATAATAATACAACCGGAGGATTCAACAATGTGGATCGCATACCCAATTCTTCCACAATACCCGATTGTTTTTATTCGTCGACTTCGATGAATAACGGAATTATGGTTACAGACACTGTTACATCTCATGACAAAGATATATCAGTACTTGAGCACGGACCTGGTCAACTTCAACCTCTTGGTTCCTCACTGATGTGCAGCCTGCAACCACAGGTCCATACTATCGGAGGATTCAAGAATATGGATCACATATCCAATTCTTCCACGGTACCCAACATTTGTTTTTATTCATCAAATTCGATGAACGGAATTATGGTTACAGATACTGTTACATTTCATGATAAAGATATATCGGTACTTAAGCAGGGAGCTGGTCAAGTTCAACCTCTTGGTTCCTCACTGATGTGCAGCCTGCAACCGCAGGTCCATAATAATACTACCGGAGGATTCAACAATATGTATCACATATCCAATTCTTCCACAATACCCGAAAATTGTTTTTATTCGTCAACTCCAATGAGCAACGGAGTATGTGACTCTACACAGTGTACGCATCATGGTGGGTCTATGACAAATGGAGCTTCTGGCTCCGGTTATCGGTGGGGATCCTTCACCCATCTCCATCATCAAAACTATAAGAATTACAGCATGTCCTCGGGGCAGATGCCCTCATCTTCGACGTGGTATCCTTCTGAGCATCCCTTGCAATATCCAACAGAGATTTGGACACAATCGGAGCCTGAAAATCATGAGATGCCTCAAGTGGATGATTCAACTTCAGTATCGTTACCTGCCCGATACATAGAATATGAGTCTATGCTTGTCAACAAGGAAGAAGCTGATATCATGCCTGTTCAGCATGCCAATAAGGACGAAGCTGATGATGATGGATTACAGTTTCTTAGCATTCCAGATGAAGTTCATAAAAATGATTCCAAATTGGCGTCATTTGATGACGAAATTAACAGTGGACTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

562

Amino Acids

63.06

Weight (kDa)

5.46

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 144 7.7e-39 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017690)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1120, 1507
Acc65I GGTACC 1 cut(s) 976
AccB1I GGYRCC 1 cut(s) 976
AccI GTMKAC 1 cut(s) 788
AciI CCGC 2 cut(s) 128, 1127
AclWI GGATC 6 cut(s) 139, 152, 750, 960, 1308, 1321
AcoI YGGCCR 1 cut(s) 266
AcsI RAATTY 2 cut(s) 368, 1003
AcuI CTGAAG 1 cut(s) 1470
AcyI GRCGYC 1 cut(s) 1652
AfaI GTAC 6 cut(s) 610, 636, 855, 978, 1065, 1258
AfiI CCNNNNNNNGG 3 cut(s) 80, 141, 1305
AflII CTTAAG 2 cut(s) 638, 1067
AjiI CACGTC 1 cut(s) 1389
AjnI CCWGG 2 cut(s) 55, 868
AleI CACNNNNGTG 2 cut(s) 901, 1111
AluBI AGCT 5 cut(s) 281, 1079, 1289, 1547, 1586
AluI AGCT 5 cut(s) 281, 1079, 1289, 1547, 1586
Alw21I GWGCWC 1 cut(s) 864
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 6 cut(s) 139, 152, 750, 960, 1308, 1321
AlwNI CAGNNNCTG 3 cut(s) 605, 824, 1034
Ama87I CYCGRG 1 cut(s) 1363
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 4 cut(s) 278, 690, 906, 1116
ApoI RAATTY 2 cut(s) 368, 1003
AseI ATTAAT 1 cut(s) 680
Asp700I GAANNNNTTC 2 cut(s) 39, 450
Asp718I GGTACC 1 cut(s) 976
AspS9I GGNCC 5 cut(s) 241, 706, 866, 922, 1132
AsuHPI GGTGA 3 cut(s) 350, 488, 1312
AvaI CYCGRG 1 cut(s) 1363
AvaII GGWCC 5 cut(s) 241, 706, 866, 922, 1132
BaeI ACNNNNGTAYC 2 cut(s) 1473, 1506
BamHI GGATCC 2 cut(s) 144, 1313
BanI GGYRCC 1 cut(s) 976
BauI CACGAG 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 864
BbvI GCAGC 4 cut(s) 290, 702, 918, 1128
BccI CCATC 6 cut(s) 74, 180, 209, 1332, 1338, 1589
BciT130I CCWGG 2 cut(s) 57, 870
BciVI GTATCC 2 cut(s) 490, 1404
BclI TGATCA 1 cut(s) 580
BcoDI GTCTC 1 cut(s) 376
BfmI CTRYAG 1 cut(s) 567
BfrI CTTAAG 2 cut(s) 638, 1067
BfuAI ACCTGC 2 cut(s) 1120, 1507
BfuI GTATCC 2 cut(s) 490, 1404
BglII AGATCT 1 cut(s) 114
BisI GCNGC 5 cut(s) 128, 279, 691, 907, 1117
BlsI GCNGC 5 cut(s) 129, 280, 692, 908, 1118
BmcAI AGTACT 2 cut(s) 636, 855
Bme1390I CCNGG 2 cut(s) 57, 870
Bme18I GGWCC 5 cut(s) 241, 706, 866, 922, 1132
BmeT110I CYCGRG 1 cut(s) 1363
BmgBI CACGTC 1 cut(s) 1389
BmgT120I GGNCC 5 cut(s) 241, 706, 866, 922, 1132
BmiI GGNNCC 8 cut(s) 146, 242, 892, 978, 1102, 1297, 1315, 1446
BmrFI CCNGG 2 cut(s) 57, 870
BmsI GCATC 6 cut(s) 547, 592, 1270, 1362, 1414, 1452
BpiI GAAGAC 1 cut(s) 453
BpuEI CTTGAG 2 cut(s) 878, 1452
Bsa29I ATCGAT 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 1652
BsaJI CCNNGG 2 cut(s) 972, 1362
BsaWI WCCGGW 3 cut(s) 722, 1148, 1298
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 141, 1305
Bse1I ACTGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 541
BseBI CCWGG 2 cut(s) 57, 870
BseCI ATCGAT 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 972, 1362
BseGI GGATG 5 cut(s) 172, 442, 553, 1405, 1480
BseLI CCNNNNNNNGG 3 cut(s) 80, 141, 1305
BseMI GCAATG 1 cut(s) 541
BseMII CTCAG 1 cut(s) 1392
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 4 cut(s) 290, 702, 918, 1128
BsgI GTGCAG 3 cut(s) 297, 925, 1135
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 976
BshVI ATCGAT 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 864
BsiHKCI CYCGRG 1 cut(s) 1363
BsiSI CCGG 3 cut(s) 723, 1149, 1299
BslFI GGGAC 2 cut(s) 254, 274
BslI CCNNNNNNNGG 3 cut(s) 80, 141, 1305
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 2 cut(s) 254, 274
BsmI GAATGC 1 cut(s) 1614
BsnI GGCC 1 cut(s) 268
BsoBI CYCGRG 1 cut(s) 1363
Bsp1286I GDGCHC 1 cut(s) 864
Bsp143I GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
BspACI CCGC 2 cut(s) 128, 1127
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 1393
BspDI ATCGAT 1 cut(s) 64
BspHI TCATGA 4 cut(s) 616, 835, 1045, 1456
BspLI GGNNCC 8 cut(s) 146, 242, 892, 978, 1102, 1297, 1315, 1446
BspMI ACCTGC 2 cut(s) 1120, 1507
BspPI GGATC 6 cut(s) 139, 152, 750, 960, 1308, 1321
BspT107I GGYRCC 1 cut(s) 976
BspTI CTTAAG 2 cut(s) 638, 1067
BsrDI GCAATG 1 cut(s) 541
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 972, 1362
BssMI GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
BssNI GRCGYC 1 cut(s) 1652
BssSI CACGAG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 57, 870
Bst4CI ACNGT 8 cut(s) 14, 502, 826, 976, 1036, 1254, 1605, 1676
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 1652
BstAFI CTTAAG 2 cut(s) 638, 1067
BstAPI GCANNNNNTGC 1 cut(s) 1411
BstC8I GCNNGC 4 cut(s) 695, 911, 1121, 1569
BstDEI CTNAG 2 cut(s) 1401, 1610
BstDSI CCRYGG 1 cut(s) 972
BstF5I GGATG 5 cut(s) 172, 442, 553, 1405, 1480
BstKTI GATC 6 cut(s) 117, 147, 583, 745, 955, 1316
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
BstMWI GCNNNNNNNGC 2 cut(s) 1411, 1564
BstNI CCWGG 2 cut(s) 57, 870
BstNSI RCATGY 3 cut(s) 697, 1360, 1571
BstSCI CCNGG 2 cut(s) 55, 868
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 4 cut(s) 290, 702, 918, 1128
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 3 cut(s) 114, 144, 1313
BstYI RGATCY 3 cut(s) 114, 144, 1313
Bsu15I ATCGAT 1 cut(s) 64
BsuI GTATCC 2 cut(s) 490, 1404
BsuRI GGCC 1 cut(s) 268
BsuTUI ATCGAT 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 972
BtrI CACGTC 1 cut(s) 1389
BtsCI GGATG 5 cut(s) 172, 442, 553, 1405, 1480
BtsIMutI CAGTG 5 cut(s) 822, 896, 1106, 1259, 1681
BveI ACCTGC 2 cut(s) 1120, 1507
Cac8I GCNNGC 4 cut(s) 695, 911, 1121, 1569
CaiI CAGNNNCTG 3 cut(s) 605, 824, 1034
CciI TCATGA 4 cut(s) 616, 835, 1045, 1456
Cfr13I GGNCC 5 cut(s) 241, 706, 866, 922, 1132
ClaI ATCGAT 1 cut(s) 64
CseI GACGC 1 cut(s) 1641
CsiI ACCWGGT 2 cut(s) 55, 868
Csp6I GTAC 6 cut(s) 609, 635, 854, 977, 1064, 1257
CviQI GTAC 6 cut(s) 609, 635, 854, 977, 1064, 1257
DdeI CTNAG 2 cut(s) 1401, 1610
DpnI GATC 6 cut(s) 116, 146, 582, 744, 954, 1315
DpnII GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
DraI TTTAAA 2 cut(s) 373, 522
EaeI YGGCCR 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco32I GATATC 1 cut(s) 1552
Eco47I GGWCC 5 cut(s) 241, 706, 866, 922, 1132
Eco57I CTGAAG 1 cut(s) 1470
Eco88I CYCGRG 1 cut(s) 1363
EcoRII CCWGG 2 cut(s) 55, 868
EcoRV GATATC 1 cut(s) 1552
EcoT22I ATGCAT 1 cut(s) 420
FaqI GGGAC 2 cut(s) 254, 274
FbaI TGATCA 1 cut(s) 580
FblI GTMKAC 1 cut(s) 788
Fnu4HI GCNGC 5 cut(s) 128, 279, 691, 907, 1117
FokI GGATG 5 cut(s) 159, 449, 560, 1392, 1487
Fsp4HI GCNGC 5 cut(s) 128, 279, 691, 907, 1117
GluI GCNGC 5 cut(s) 128, 279, 691, 907, 1117
HaeIII GGCC 1 cut(s) 268
HapII CCGG 3 cut(s) 723, 1149, 1299
HgaI GACGC 1 cut(s) 1641
Hin1I GRCGYC 1 cut(s) 1652
HincII GTYRAC 4 cut(s) 789, 875, 1218, 1534
HindII GTYRAC 4 cut(s) 789, 875, 1218, 1534
HpaII CCGG 3 cut(s) 723, 1149, 1299
HphI GGTGA 3 cut(s) 350, 488, 1312
Hpy166II GTNNAC 8 cut(s) 290, 341, 789, 875, 1218, 1257, 1534, 1679
Hpy188I TCNGA 4 cut(s) 580, 935, 1402, 1444
Hpy8I GTNNAC 8 cut(s) 290, 341, 789, 875, 1218, 1257, 1534, 1679
Hpy99I CGWCG 2 cut(s) 790, 1390
HpyAV CCTTC 5 cut(s) 292, 436, 473, 1327, 1407
HpyCH4III ACNGT 8 cut(s) 14, 502, 826, 976, 1036, 1254, 1605, 1676
HpyCH4IV ACGT 2 cut(s) 292, 1388
HpyF10VI GCNNNNNNNGC 2 cut(s) 1411, 1564
HpyF3I CTNAG 2 cut(s) 1401, 1610
HpySE526I ACGT 2 cut(s) 292, 1388
Hsp92I GRCGYC 1 cut(s) 1652
KpnI GGTACC 1 cut(s) 980
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
LmnI GCTCC 4 cut(s) 1076, 1286, 1301, 1444
Lsp1109I GCAGC 4 cut(s) 290, 702, 918, 1128
LweI GCATC 6 cut(s) 547, 592, 1270, 1362, 1414, 1452
MabI ACCWGGT 2 cut(s) 55, 868
MaeII ACGT 2 cut(s) 292, 1388
MaeIII GTNAC 9 cut(s) 137, 562, 595, 814, 826, 1024, 1036, 1241, 1494
MalI GATC 6 cut(s) 116, 146, 582, 744, 954, 1315
MboI GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
MboII GAAGA 8 cut(s) 41, 224, 458, 750, 960, 1176, 1374, 1553
MflI RGATCY 3 cut(s) 114, 144, 1313
MhlI GDGCHC 1 cut(s) 864
MlyI GAGTC 3 cut(s) 256, 1238, 1529
MmeI TCCRAC 3 cut(s) 275, 474, 1445
Mph1103I ATGCAT 1 cut(s) 420
MroXI GAANNNNTTC 2 cut(s) 39, 450
MseI TTAA 7 cut(s) 372, 432, 521, 639, 680, 1068, 1671
MslI CAYNNNNRTG 5 cut(s) 621, 901, 1111, 1266, 1635
MspCI CTTAAG 2 cut(s) 638, 1067
MspI CCGG 3 cut(s) 723, 1149, 1299
MspR9I CCNGG 2 cut(s) 57, 870
Mva1269I GAATGC 1 cut(s) 1614
MvaI CCWGG 2 cut(s) 57, 870
MwoI GCNNNNNNNGC 2 cut(s) 1411, 1564
NdeII GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
NlaIV GGNNCC 8 cut(s) 146, 242, 892, 978, 1102, 1297, 1315, 1446
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 2 cut(s) 562, 1241
NsiI ATGCAT 1 cut(s) 420
NspI RCATGY 3 cut(s) 697, 1360, 1571
OliI CACNNNNGTG 2 cut(s) 901, 1111
PaeI GCATGC 2 cut(s) 697, 1571
PagI TCATGA 4 cut(s) 616, 835, 1045, 1456
PcsI WCGNNNNNNNCGW 4 cut(s) 271, 280, 289, 791
PctI GAATGC 1 cut(s) 1614
PdmI GAANNNNTTC 2 cut(s) 39, 450
PfeI GAWTC 9 cut(s) 66, 91, 121, 671, 729, 939, 1155, 1478, 1640
PflFI GACNNNGTC 1 cut(s) 870
PkrI GCNGC 5 cut(s) 129, 280, 692, 908, 1118
PleI GAGTC 3 cut(s) 256, 1238, 1528
PpsI GAGTC 3 cut(s) 256, 1238, 1528
PshBI ATTAAT 1 cut(s) 680
Psp6I CCWGG 2 cut(s) 55, 868
PspGI CCWGG 2 cut(s) 55, 868
PspN4I GGNNCC 8 cut(s) 146, 242, 892, 978, 1102, 1297, 1315, 1446
PspPI GGNCC 5 cut(s) 241, 706, 866, 922, 1132
PstNI CAGNNNCTG 3 cut(s) 605, 824, 1034
PsuI RGATCY 3 cut(s) 114, 144, 1313
PsyI GACNNNGTC 1 cut(s) 870
RsaI GTAC 6 cut(s) 610, 636, 855, 978, 1065, 1258
RsaNI GTAC 6 cut(s) 609, 635, 854, 977, 1064, 1257
RseI CAYNNNNRTG 5 cut(s) 621, 901, 1111, 1266, 1635
SalI GTCGAC 1 cut(s) 787
SaqAI TTAA 7 cut(s) 372, 432, 521, 639, 680, 1068, 1671
SatI GCNGC 5 cut(s) 128, 279, 691, 907, 1117
Sau3AI GATC 6 cut(s) 114, 144, 580, 742, 952, 1313
Sau96I GGNCC 5 cut(s) 241, 706, 866, 922, 1132
ScaI AGTACT 2 cut(s) 636, 855
SchI GAGTC 3 cut(s) 256, 1238, 1529
ScrFI CCNGG 2 cut(s) 57, 870
SduI GDGCHC 1 cut(s) 864
SexAI ACCWGGT 2 cut(s) 55, 868
SfaNI GCATC 6 cut(s) 547, 592, 1270, 1362, 1414, 1452
SfcI CTRYAG 1 cut(s) 567
SinI GGWCC 5 cut(s) 241, 706, 866, 922, 1132
SmiI ATTTAAAT 1 cut(s) 522
SmiMI CAYNNNNRTG 5 cut(s) 621, 901, 1111, 1266, 1635
SmlI CTYRAG 4 cut(s) 638, 857, 1067, 1467
SmoI CTYRAG 4 cut(s) 638, 857, 1067, 1467
SphI GCATGC 2 cut(s) 697, 1571
SsiI CCGC 2 cut(s) 128, 1127
SspI AATATT 2 cut(s) 38, 160
StyD4I CCNGG 2 cut(s) 55, 868
SwaI ATTTAAAT 1 cut(s) 522
TaaI ACNGT 8 cut(s) 14, 502, 826, 976, 1036, 1254, 1605, 1676
TaiI ACGT 2 cut(s) 295, 1391
TaqI TCGA 7 cut(s) 64, 198, 366, 788, 794, 1007, 1385
TaqII GACCGA 1 cut(s) 258
TatI WGTACW 2 cut(s) 634, 853
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 9 cut(s) 66, 91, 121, 671, 729, 939, 1155, 1478, 1640
Tru1I TTAA 7 cut(s) 372, 432, 521, 639, 680, 1068, 1671
Tru9I TTAA 7 cut(s) 372, 432, 521, 639, 680, 1068, 1671
TscAI CASTG 5 cut(s) 829, 903, 1113, 1259, 1681
TseFI GTSAC 2 cut(s) 562, 1241
TseI GCWGC 4 cut(s) 278, 690, 906, 1116
Tsp45I GTSAC 2 cut(s) 562, 1241
TspGWI ACGGA 6 cut(s) 419, 560, 819, 879, 1029, 1248
TspRI CASTG 5 cut(s) 829, 903, 1113, 1259, 1681
Tth111I GACNNNGTC 1 cut(s) 870
Vha464I CTTAAG 2 cut(s) 638, 1067
VpaK11BI GGWCC 5 cut(s) 241, 706, 866, 922, 1132
VspI ATTAAT 1 cut(s) 680
XapI RAATTY 2 cut(s) 368, 1003
XceI RCATGY 3 cut(s) 697, 1360, 1571
XcmI CCANNNNNNNNNTGG 1 cut(s) 1428
XmiI GTMKAC 1 cut(s) 788
XmnI GAANNNNTTC 2 cut(s) 39, 450
ZrmI AGTACT 2 cut(s) 636, 855
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.