Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0013903

Physical Location & Seq

Genomic Coordinates Reverse (-)

1873582 .. 1878324

Gene Structure 4743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026283

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGGCCGCGGCGGCGCTCCGGTCCAAACCCTCCCGCGACTCCGTCTCGCAATTCAGCTACTTCCTCTTCAATTACATGCACACGGGTCGCGTCGTTGCCAATTCTCACTACCGCACCAAAGGCGACGACTTGTTCGTCAACACTCCCTACCACTTCACGGCGTTCAAGCCGGTGTCGTTTTCCGGCAACCTGGGCGGCCAGAGAGACGGCCGGAGTAGCAGTGATAGGCCTTTGGGGCAGAAACTGAACAGTAGTAGTGTTATGTCGACGTATGGAGACCCGCCGGAGGTTTGGTCCGGTGACGGGATTGTGATTCGGGCCGGGCCGGGGTCGAATTTGGTTAAGGGCGGCGGCGGTGGTGGTGGTAGTGGTGGTCCGGCCGGTGGTGGAGGTGGAGGGTTTGATTCAAATTCAAAGGATGGGTGTTGGGGTGGGTCTAATCTGGGGAGTAGTTTCCCTACTCCAAAGGAAATTTGTAAAGGGCTTGATAAGTTTGTAATTGGGCAAGAGAGAGCTAAGAAGGTACTGTCTGTTGCTGTTTACAATCATTATAAGAGGATATATCATGAGTCTCAGCAGAAGTGGTCTGCAGGAGATTCAGGTAACAACAAGGTGGATGCTATGAATGATGATAGAGTGGAGCTTGAGAAAAGTAATATTCTTGTAATGGGGCCAACTGGGTCAGGGAAGACACTACTTGCTAAAACCTTGGCACGATTTGTGAATGTTCCCTTTGTCATTGCAGATGCAACAACATTAACTCAGGAAAGATATGTCGGGGAAGATGTGGAATCAATTTTATACAAACTTCTTTCGGTTGCTGATTACAATGTGGCAGCTGCACAACAAGGAATTGTTTATATTGATGAAGTTGACAAGATTACCAAAAAGGCTGAGAGCCTAAATATCAGCAGAGATGTATCTGGAGAAGGTGTTCAACAAGCATTACTAAAGATGCTGGAAGGGACAGTTGTAAATGTTCCAGAAAAGGGCGCTCGAAAGCATCCAAGAGGTGAAAATATTCAGATTGACACGAAGGATATTCTTTTCATATGTGGGGGTGCCTTTATCGACTTAGAGAAAACCATCTCAGAAAGACGCCAAGATTCCTCTATTGGGTTTGGTGCTCCAGTTAGAGCAAACATGAGAACTGGTGGTGTTACAGATGCTGCGGTTACATCATCCTTATTGGAGATTGTTGAAAGTAGTGACCTTATTCGATATGGTTTGATACCTGAATTTGTTGGGCGGTTTCCTATCCTTGTCAGCTTATCTGCACTAACTGAAGATCAATTAGTTCAGGTCCTAACGGAGCCCAAAAATGCATTGGGGAAGCAATACAAGAAGATGTTCCGAATGAATGACGTCCAACTGCATTTCACGGAAAGTGCCTTGAGGCTGATTGCTAAGAAAGCAATATCAAAGAACACTGGAGCTCGTGGATTACGAGCAATTTTAGAAACTATATTAATGGATGCCATGTATGAGATTCCTGATGTTAGAACTGGTGATGACATAATAGATGCAGTTGTAATTGATGAAGAGGCCGTTGGAACCGATGGCCAGGGATGTGGAGCTAAAATCCTTTATGGTAAGGGTGCATTGGATCAGTATCTTTCAAAACATAAAGAGAAGGATGCTCAGATTGCAACCACCGAAGGGTCTGATGTAGAGCCTGAAGGGGAAGCCGAGCTTTCATCTGTTGTTGCTAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

573

Amino Acids

61.37

Weight (kDa)

5.89

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	216 - 420	3.5e-30	AAA domain (Cdc48 subfamily)
AAA	PF00004	220 - 326	2.8e-14	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	427 - 496	1.5e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53350
fragaria_vesca	FvH4_7g31580
malus_domestica	MD01G1218600.v1.1 MD07G1288500.v1.1
prunus_persica	Prupe.2G310000_v2.0.a1
pyrus_communis	pycom01g22850 pycom07g26110
rosa_chinensis	RchiOBHm_Chr1g0380581
rosa_laevigata	RLG00000026283
rosa_multiflora	Rmu_ssc0000015.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279170
rosa_rugosa	Rorug01G0422700
rosa_samantha	Rh1AG447200 Rh1BG402500 Rh1CG417000 Rh1DG432700
rosa_wichuraiana	Rw1G038900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AasI	GACNNNNNNGTC	1 cut(s)	134
AatII	GACGTC	1 cut(s)	1368
AccB1I	GGYRCC	1 cut(s)	1061
AccI	GTMKAC	1 cut(s)	266
AccII	CGCG	3 cut(s)	8, 36, 90
AclWI	GGATC	1 cut(s)	1614
AcoI	YGGCCR	5 cut(s)	3, 196, 208, 378, 1561
AcsI	RAATTY	4 cut(s)	334, 409, 471, 1238
AcuI	CTGAAG	2 cut(s)	1305, 1698
AcyI	GRCGYC	2 cut(s)	1099, 1365
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	8 cut(s)	157, 286, 303, 327, 383, 989, 1116, 1659
AgsI	TTSAA	7 cut(s)	70, 166, 408, 414, 938, 1202, 1620
AjnI	CCWGG	2 cut(s)	189, 1563
AjuI	GAANNNNNNNTTGG	2 cut(s)	1533, 1565
AloI	GAACNNNNNNTCC	2 cut(s)	918, 950
AluBI	AGCT	8 cut(s)	57, 515, 643, 839, 1269, 1436, 1577, 1693
AluI	AGCT	8 cut(s)	57, 515, 643, 839, 1269, 1436, 1577, 1693
Alw21I	GWGCWC	2 cut(s)	1129, 1438
Alw26I	GTCTC	4 cut(s)	49, 198, 270, 576
AlwI	GGATC	1 cut(s)	1614
AlwNI	CAGNNNCTG	2 cut(s)	244, 1169
ApeKI	GCWGC	3 cut(s)	836, 839, 1169
ApoI	RAATTY	4 cut(s)	334, 409, 471, 1238
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AseI	ATTAAT	1 cut(s)	1469
Asp700I	GAANNNNTTC	3 cut(s)	933, 1020, 1349
AspLEI	GCGC	2 cut(s)	16, 995
AspS9I	GGNCC	7 cut(s)	21, 294, 318, 323, 374, 671, 1303
AsuC2I	CCSGG	2 cut(s)	322, 327
AsuHPI	GGTGA	3 cut(s)	311, 1025, 1520
AsuNHI	GCTAGC	1 cut(s)	1709
AvaII	GGWCC	4 cut(s)	21, 294, 374, 1303
BalI	TGGCCA	1 cut(s)	1563
BanI	GGYRCC	1 cut(s)	1061
BanII	GRGCYC	2 cut(s)	1317, 1438
BauI	CACGAG	1 cut(s)	1437
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	2 cut(s)	1129, 1438
BbvI	GCAGC	3 cut(s)	826, 848, 1156
BccI	CCATC	3 cut(s)	413, 1094, 1553
BceAI	ACGGC	3 cut(s)	174, 223, 1532
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	2 cut(s)	191, 1565
BcnI	CCSGG	2 cut(s)	322, 327
BcoDI	GTCTC	4 cut(s)	49, 198, 270, 576
BfaI	CTAG	1 cut(s)	1710
BfmI	CTRYAG	1 cut(s)	588
BfoI	RGCGCY	2 cut(s)	17, 996
BglI	GCCNNNNNGGC	2 cut(s)	11, 235
BisI	GCNGC	9 cut(s)	6, 9, 12, 196, 349, 352, 837, 840, 1170
BlsI	GCNGC	9 cut(s)	7, 10, 13, 197, 350, 353, 838, 841, 1171
Bme1390I	CCNGG	4 cut(s)	191, 322, 327, 1565
Bme18I	GGWCC	4 cut(s)	21, 294, 374, 1303
BmgT120I	GGNCC	7 cut(s)	21, 294, 318, 323, 374, 671, 1303
BmiI	GGNNCC	4 cut(s)	672, 1063, 1314, 1555
BmrFI	CCNGG	4 cut(s)	191, 322, 327, 1565
BmrI	ACTGGG	1 cut(s)	687
BmsI	GCATC	8 cut(s)	607, 736, 945, 1012, 1156, 1465, 1513, 1627
BmtI	GCTAGC	1 cut(s)	1713
BmuI	ACTGGG	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	695
BpmI	CTGGAG	3 cut(s)	945, 1113, 1452
BpuEI	CTTGAG	2 cut(s)	665, 1414
BpuMI	CCSGG	2 cut(s)	322, 327
BsaBI	GATNNNNATC	1 cut(s)	1611
BsaHI	GRCGYC	2 cut(s)	1099, 1365
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	5 cut(s)	6, 190, 326, 708, 1564
BsaWI	WCCGGW	2 cut(s)	18, 296
BsaXI	ACNNNNNCTCC	6 cut(s)	205, 235, 278, 308, 918, 948
Bsc4I	CCNNNNNNNGG	8 cut(s)	157, 286, 303, 327, 383, 989, 1116, 1659
Bse118I	RCCGGY	2 cut(s)	169, 380
Bse1I	ACTGG	5 cut(s)	682, 1130, 1156, 1435, 1510
Bse3DI	GCAATG	1 cut(s)	738
Bse8I	GATNNNNATC	1 cut(s)	1611
BseBI	CCWGG	2 cut(s)	191, 1565
BseDI	CCNNGG	5 cut(s)	6, 190, 326, 708, 1564
BseGI	GGATG	7 cut(s)	424, 622, 1003, 1181, 1480, 1574, 1642
BseJI	GATNNNNATC	1 cut(s)	1611
BseLI	CCNNNNNNNGG	8 cut(s)	157, 286, 303, 327, 383, 989, 1116, 1659
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	5 cut(s)	587, 776, 885, 1104, 1655
BseNI	ACTGG	5 cut(s)	682, 1130, 1156, 1435, 1510
BseX3I	CGGCCG	2 cut(s)	208, 378
BseXI	GCAGC	3 cut(s)	826, 848, 1156
BsgI	GTGCAG	2 cut(s)	825, 1260
Bsh1236I	CGCG	3 cut(s)	8, 36, 90
Bsh1285I	CGRYCG	2 cut(s)	211, 381
BshNI	GGYRCC	1 cut(s)	1061
BsiEI	CGRYCG	2 cut(s)	211, 381
BsiHKAI	GWGCWC	2 cut(s)	1129, 1438
BslFI	GGGAC	1 cut(s)	979
BslI	CCNNNNNNNGG	8 cut(s)	157, 286, 303, 327, 383, 989, 1116, 1659
BsmAI	GTCTC	4 cut(s)	49, 198, 270, 576
BsmBI	CGTCTC	2 cut(s)	49, 198
BsmFI	GGGAC	1 cut(s)	979
Bso31I	GGTCTC	1 cut(s)	270
Bsp1286I	GDGCHC	3 cut(s)	1129, 1317, 1438
Bsp143I	GATC	2 cut(s)	1288, 1606
BspCNI	CTCAG	5 cut(s)	586, 775, 886, 1103, 1654
BspFNI	CGCG	3 cut(s)	8, 36, 90
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	4 cut(s)	672, 1063, 1314, 1555
BspMAI	CTGCAG	1 cut(s)	592
BspOI	GCTAGC	1 cut(s)	1713
BspPI	GGATC	1 cut(s)	1614
BspT107I	GGYRCC	1 cut(s)	1061
BspTNI	GGTCTC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	738
BsrFI	RCCGGY	2 cut(s)	169, 380
BsrI	ACTGG	5 cut(s)	682, 1130, 1156, 1435, 1510
BssAI	RCCGGY	2 cut(s)	169, 380
BssECI	CCNNGG	5 cut(s)	6, 190, 326, 708, 1564
BssMI	GATC	2 cut(s)	1288, 1606
BssNI	GRCGYC	2 cut(s)	1099, 1365
BssSI	CACGAG	1 cut(s)	1437
BssT1I	CCWWGG	1 cut(s)	708
Bst2BI	CACGAG	1 cut(s)	1437
Bst2UI	CCWGG	2 cut(s)	191, 1565
Bst4CI	ACNGT	3 cut(s)	251, 528, 970
Bst6I	CTCTTC	2 cut(s)	71, 1536
BstACI	GRCGYC	2 cut(s)	1099, 1365
BstC8I	GCNNGC	1 cut(s)	1711
BstDEI	CTNAG	8 cut(s)	516, 573, 762, 894, 1075, 1090, 1407, 1641
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	7 cut(s)	424, 622, 1003, 1181, 1480, 1574, 1642
BstFNI	CGCG	3 cut(s)	8, 36, 90
BstH2I	RGCGCY	2 cut(s)	17, 996
BstHHI	GCGC	2 cut(s)	16, 995
BstKTI	GATC	2 cut(s)	1291, 1609
BstMAI	GTCTC	4 cut(s)	49, 198, 270, 576
BstMBI	GATC	2 cut(s)	1288, 1606
BstMCI	CGRYCG	2 cut(s)	211, 381
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 120, 192, 216, 235, 1412, 1646
BstNI	CCWGG	2 cut(s)	191, 1565
BstNSI	RCATGY	2 cut(s)	79, 1717
BstSCI	CCNGG	4 cut(s)	189, 320, 325, 1563
BstSFI	CTRYAG	1 cut(s)	588
BstUI	CGCG	3 cut(s)	8, 36, 90
BstV1I	GCAGC	3 cut(s)	826, 848, 1156
BstV2I	GAAGAC	1 cut(s)	695
BstXI	CCANNNNNNTGG	1 cut(s)	1571
BstZI	CGGCCG	2 cut(s)	208, 378
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	7 cut(s)	424, 622, 1003, 1181, 1480, 1574, 1642
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	226, 1428
Cac8I	GCNNGC	1 cut(s)	1711
CaiI	CAGNNNCTG	2 cut(s)	244, 1169
CciI	TCATGA	1 cut(s)	565
CfoI	GCGC	2 cut(s)	16, 995
Cfr10I	RCCGGY	2 cut(s)	169, 380
Cfr13I	GGNCC	7 cut(s)	21, 294, 318, 323, 374, 671, 1303
Cfr42I	CCGCGG	1 cut(s)	9
CseI	GACGC	2 cut(s)	79, 1107
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	5 cut(s)	76, 566, 1144, 1480, 1714
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	8 cut(s)	516, 573, 762, 894, 1075, 1090, 1407, 1641
DpnI	GATC	2 cut(s)	1290, 1608
DpnII	GATC	2 cut(s)	1288, 1606
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	5 cut(s)	3, 196, 208, 378, 1561
EagI	CGGCCG	2 cut(s)	208, 378
Eam1104I	CTCTTC	2 cut(s)	71, 1536
EarI	CTCTTC	2 cut(s)	71, 1536
Ecl136II	GAGCTC	1 cut(s)	1436
EclXI	CGGCCG	2 cut(s)	208, 378
Eco130I	CCWWGG	1 cut(s)	708
Eco147I	AGGCCT	1 cut(s)	229
Eco24I	GRGCYC	2 cut(s)	1317, 1438
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	4 cut(s)	21, 294, 374, 1303
Eco52I	CGGCCG	2 cut(s)	208, 378
Eco53kI	GAGCTC	1 cut(s)	1436
Eco57I	CTGAAG	2 cut(s)	1305, 1698
EcoICRI	GAGCTC	1 cut(s)	1436
EcoO109I	RGGNCCY	1 cut(s)	1303
EcoRII	CCWGG	2 cut(s)	189, 1563
EcoT14I	CCWWGG	1 cut(s)	708
EcoT22I	ATGCAT	1 cut(s)	1327
EcoT38I	GRGCYC	2 cut(s)	1317, 1438
ErhI	CCWWGG	1 cut(s)	708
Esp3I	CGTCTC	2 cut(s)	49, 198
FaeI	CATG	5 cut(s)	79, 569, 1147, 1483, 1717
FalI	AAGNNNNNCTT	2 cut(s)	1677, 1709
FaqI	GGGAC	1 cut(s)	979
FatI	CATG	5 cut(s)	75, 565, 1143, 1479, 1713
FauI	CCCGC	2 cut(s)	41, 288
FauNDI	CATATG	1 cut(s)	1052
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	9 cut(s)	6, 9, 12, 196, 349, 352, 837, 840, 1170
FokI	GGATG	7 cut(s)	431, 629, 990, 1168, 1487, 1581, 1649
FriOI	GRGCYC	2 cut(s)	1317, 1438
Fsp4HI	GCNGC	9 cut(s)	6, 9, 12, 196, 349, 352, 837, 840, 1170
FspBI	CTAG	1 cut(s)	1710
GlaI	GCGC	2 cut(s)	15, 994
GluI	GCNGC	9 cut(s)	6, 9, 12, 196, 349, 352, 837, 840, 1170
GsuI	CTGGAG	3 cut(s)	945, 1113, 1452
HaeII	RGCGCY	2 cut(s)	17, 996
HgaI	GACGC	2 cut(s)	79, 1107
HhaI	GCGC	2 cut(s)	16, 995
Hin1I	GRCGYC	2 cut(s)	1099, 1365
Hin1II	CATG	5 cut(s)	79, 569, 1147, 1483, 1717
Hin6I	GCGC	2 cut(s)	14, 993
HinP1I	GCGC	2 cut(s)	14, 993
HincII	GTYRAC	3 cut(s)	139, 267, 874
HindII	GTYRAC	3 cut(s)	139, 267, 874
HinfI	GANTC	8 cut(s)	38, 313, 404, 569, 596, 791, 1106, 1489
HphI	GGTGA	3 cut(s)	311, 1025, 1520
Hpy166II	GTNNAC	4 cut(s)	139, 267, 541, 874
Hpy188I	TCNGA	5 cut(s)	1026, 1093, 1355, 1644, 1666
Hpy188III	TCNNGA	5 cut(s)	566, 764, 924, 983, 1493
Hpy8I	GTNNAC	4 cut(s)	139, 267, 541, 874
Hpy99I	CGWCG	3 cut(s)	95, 128, 271
HpyAV	CCTTC	7 cut(s)	514, 923, 956, 1030, 1627, 1652, 1673
HpyCH4III	ACNGT	3 cut(s)	251, 528, 970
HpyCH4IV	ACGT	2 cut(s)	269, 1365
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 120, 192, 216, 235, 1412, 1646
HpyF3I	CTNAG	8 cut(s)	516, 573, 762, 894, 1075, 1090, 1407, 1641
HpySE526I	ACGT	2 cut(s)	269, 1365
Hsp92I	GRCGYC	2 cut(s)	1099, 1365
Hsp92II	CATG	5 cut(s)	79, 569, 1147, 1483, 1717
HspAI	GCGC	2 cut(s)	14, 993
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	1288, 1606
LmnI	GCTCC	6 cut(s)	21, 640, 1132, 1312, 1433, 1574
Lsp1109I	GCAGC	3 cut(s)	826, 848, 1156
LweI	GCATC	8 cut(s)	607, 736, 945, 1012, 1156, 1465, 1513, 1627
MaeI	CTAG	1 cut(s)	1710
MaeII	ACGT	2 cut(s)	269, 1365
MaeIII	GTNAC	5 cut(s)	299, 602, 1159, 1174, 1208
MalI	GATC	2 cut(s)	1290, 1608
MboI	GATC	2 cut(s)	1288, 1606
MboII	GAAGA	6 cut(s)	58, 700, 794, 1298, 1357, 1553
MhlI	GDGCHC	3 cut(s)	1129, 1317, 1438
MlsI	TGGCCA	1 cut(s)	1563
MluNI	TGGCCA	1 cut(s)	1563
MlyI	GAGTC	2 cut(s)	32, 578
MmeI	TCCRAC	2 cut(s)	1393, 1531
Mox20I	TGGCCA	1 cut(s)	1563
Mph1103I	ATGCAT	1 cut(s)	1327
MroXI	GAANNNNTTC	3 cut(s)	933, 1020, 1349
MscI	TGGCCA	1 cut(s)	1563
MseI	TTAA	3 cut(s)	342, 758, 1469
Msp20I	TGGCCA	1 cut(s)	1563
MspA1I	CMGCKG	2 cut(s)	8, 839
MspR9I	CCNGG	4 cut(s)	191, 322, 327, 1565
MvaI	CCWGG	2 cut(s)	191, 1565
MvnI	CGCG	3 cut(s)	8, 36, 90
MwoI	GCNNNNNNNGC	7 cut(s)	11, 120, 192, 216, 235, 1412, 1646
NciI	CCSGG	2 cut(s)	322, 327
NdeI	CATATG	1 cut(s)	1052
NdeII	GATC	2 cut(s)	1288, 1606
NheI	GCTAGC	1 cut(s)	1709
NlaIII	CATG	5 cut(s)	79, 569, 1147, 1483, 1717
NlaIV	GGNNCC	4 cut(s)	672, 1063, 1314, 1555
NmeAIII	GCCGAG	1 cut(s)	1714
NmuCI	GTSAC	2 cut(s)	299, 1208
NsiI	ATGCAT	1 cut(s)	1327
NspI	RCATGY	2 cut(s)	79, 1717
PagI	TCATGA	1 cut(s)	565
PceI	AGGCCT	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 1444
PdmI	GAANNNNTTC	3 cut(s)	933, 1020, 1349
PfeI	GAWTC	6 cut(s)	313, 404, 596, 791, 1106, 1489
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	9 cut(s)	7, 10, 13, 197, 350, 353, 838, 841, 1171
PleI	GAGTC	2 cut(s)	32, 577
PpsI	GAGTC	2 cut(s)	32, 577
PpuMI	RGGWCCY	1 cut(s)	1303
PshBI	ATTAAT	1 cut(s)	1469
PsiI	TTATAA	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	1438
Psp5II	RGGWCCY	1 cut(s)	1303
Psp6I	CCWGG	2 cut(s)	189, 1563
PspGI	CCWGG	2 cut(s)	189, 1563
PspN4I	GGNNCC	4 cut(s)	672, 1063, 1314, 1555
PspPI	GGNCC	7 cut(s)	21, 294, 318, 323, 374, 671, 1303
PspPPI	RGGWCCY	1 cut(s)	1303
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	2 cut(s)	244, 1169
PsyI	GACNNNGTC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	839
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	1438
SacII	CCGCGG	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	265
SaqAI	TTAA	3 cut(s)	342, 758, 1469
SatI	GCNGC	9 cut(s)	6, 9, 12, 196, 349, 352, 837, 840, 1170
Sau3AI	GATC	2 cut(s)	1288, 1606
Sau96I	GGNCC	7 cut(s)	21, 294, 318, 323, 374, 671, 1303
SchI	GAGTC	2 cut(s)	32, 578
ScrFI	CCNGG	4 cut(s)	191, 322, 327, 1565
SduI	GDGCHC	3 cut(s)	1129, 1317, 1438
SfaNI	GCATC	8 cut(s)	607, 736, 945, 1012, 1156, 1465, 1513, 1627
SfcI	CTRYAG	1 cut(s)	588
Sfr303I	CCGCGG	1 cut(s)	9
SgrBI	CCGCGG	1 cut(s)	9
SinI	GGWCC	4 cut(s)	21, 294, 374, 1303
SmlI	CTYRAG	2 cut(s)	644, 1393
SmoI	CTYRAG	2 cut(s)	644, 1393
SseBI	AGGCCT	1 cut(s)	229
SspI	AATATT	2 cut(s)	658, 1021
SspMI	CTAG	1 cut(s)	1710
SstI	GAGCTC	1 cut(s)	1438
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	4 cut(s)	189, 320, 325, 1563
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	3 cut(s)	251, 528, 970
TaiI	ACGT	2 cut(s)	272, 1368
TaqI	TCGA	5 cut(s)	266, 332, 997, 1071, 1219
TauI	GCSGC	6 cut(s)	8, 11, 14, 198, 351, 354
TfiI	GAWTC	6 cut(s)	313, 404, 596, 791, 1106, 1489
Tru1I	TTAA	3 cut(s)	342, 758, 1469
Tru9I	TTAA	3 cut(s)	342, 758, 1469
TscAI	CASTG	2 cut(s)	226, 1435
TseFI	GTSAC	2 cut(s)	299, 1208
TseI	GCWGC	3 cut(s)	836, 839, 1169
Tsp45I	GTSAC	2 cut(s)	299, 1208
TspDTI	ATGAA	6 cut(s)	638, 882, 1039, 1373, 1554, 1686
TspGWI	ACGGA	3 cut(s)	31, 1325, 1397
TspRI	CASTG	2 cut(s)	226, 1435
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	4 cut(s)	21, 294, 374, 1303
VspI	ATTAAT	1 cut(s)	1469
XapI	RAATTY	4 cut(s)	334, 409, 471, 1238
XceI	RCATGY	2 cut(s)	79, 1717
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1324
XmiI	GTMKAC	1 cut(s)	266
XmnI	GAANNNNTTC	3 cut(s)	933, 1020, 1349
XspI	CTAG	1 cut(s)	1710
ZraI	GACGTC	1 cut(s)	1366
Zsp2I	ATGCAT	1 cut(s)	1327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.