Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0013903

Physical Location & Seq

Genomic Coordinates Forward (+)

52623377 .. 52628129

Gene Structure 4753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG402500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1722 bp

ATGGCCGCGGCGGCGCTCAGGTCCAAACCCTCCCGCGACTCCGTCTCGCAATTCAGCTACTTCCTCTTCAATTACATGCACACCGGTCGCGTCGTCGCCAATTCTCACTACCGCAGCAAAGGCGACGACTTGTTCTTCAACACTCCCTACCACTTCACGGCCTTCAAGCCGGTGTCGTTTTCCGGCAACCTGGGCGGCCAGAGAGACGGCCGGAGTAGCAGTGATAGGACTTTGGGGCAGAAACTGAACAGTAGTAGTGTTATGTCGACGTATGGAGACCCGCCGGAGGTATGGTCCGGTGACGGGATTGTGATTCGGGCCGGGCCGGGGTCGAATTTGTTGAAGGGCGGTGGTGGTGGCGGCGGCGGCGGTGGTGGTCCGGCCGGTGGTGGAGGTGGAGGGTTTGATTCGAATTCAAAGGATGGGTGTTGGGGTGGGTCTAATCTGGGGAGTAGTTTTCCTACTCCAAAGGAAATTTGTAAGGGGCTTGATAAGTTTGTAATTGGGCAAGAGAGAGCTAAGAAGGTACTGTCTGTTGCTGTTTACAATCATTATAAGAGGATATATCATGAGTCTCAGCAGAAGTGGTCTGCAGGAGATTCAGGTAACAACAAAGCGGATGCCATGAATGACGATAGAGTGGAGCTTGAGAAAAGTAATATTCTTGTAATGGGGCCAACCGGCTCAGGGAAGACACTACTTGCTAAAACCTTGGCACGATTTGTGAATGTTCCCTTTGTCATTGCAGATGCAACAACATTAACTCAGGAAAGATATGTGGGGGAAGATGTGGAATCGATTTTATACAAACTTCTTTCGGTTGCTGATTACAATGTGGCAGCTGCACAACAAGGAATTGTTTATATTGATGAAGTTGACAAGATTACCAAAAAGGCTGAGAGCCTAAATATCAGCAGAGATGTATCTGGAGAAGGTGTTCAACAAGCATTACTAAAGATGCTGGAAGGGACGGTTGTAAATGTTCCAGAAAAGGGCGCTCGAAAGCATCCAAGAGGTGAAAATATTCAGATTGACACAAAGGATATTCTTTTCATATGTGGGGGTGCCTTTATCGACTTAGAGAAAACCATCTCAGAAAGACGCCAAGATTCCTCTATTGGGTTTGGTGCTCCAGTTAGAGCAAACATGAGAACTGGTGGTGTTACAGATGCTGCGGTTACATCATCCTTATTGGAGATTGTTGAAAGTAGTGACCTTATTCGATATGGTTTGATACCTGAATTTGTTGGACGGTTTCCTATCCTTGTCAGCTTATCTGCACTAACTGAAGATCAATTAGTTCAGGTTCTAACGGAGCCCAAAAATGCATTGGGGAAGCAATACAAGAAGATGTTCCGAATGAATGATGTCCAACTGCATTTCACGGAAAGTGCCTTGAGGCTAATTGCTAAGAAAGCAATATCAAAGAACACTGGGGCTCGTGGATTACGAGCAATTTTAGAAACTATATTAATGGATGCTATGTATGAGATTCCTGATGTTAGAACTGGTAATGACATAATAGATGCAGTTGTAATTGATGAAGAGGCCGTTGGAACCGATGGCCAGGGTTGTGGAGCTAAAATCCTTTATGGTAAGGGTGCATTGGATCAGTATCTTTCAAAACATAAGGAGAAGGATGCTCAGATTGCAACCACCGAAGGGTCTGATGTAGAGCCTGAAGGGGAAGCCGAGCTTTCATCTGTTGTTGCTAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

573

Amino Acids

61.42

Weight (kDa)

6.02

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	217 - 421	3.5e-30	AAA domain (Cdc48 subfamily)
AAA	PF00004	221 - 327	2.8e-14	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	428 - 497	1.5e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53350
fragaria_vesca	FvH4_7g31580
malus_domestica	MD01G1218600.v1.1 MD07G1288500.v1.1
prunus_persica	Prupe.2G310000_v2.0.a1
pyrus_communis	pycom01g22850 pycom07g26110
rosa_chinensis	RchiOBHm_Chr1g0380581
rosa_laevigata	RLG00000026283
rosa_multiflora	Rmu_ssc0000015.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279170
rosa_rugosa	Rorug01G0422700
rosa_samantha	Rh1AG447200 Rh1BG402500 Rh1CG417000 Rh1DG432700
rosa_wichuraiana	Rw1G038900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	1064
AccI	GTMKAC	1 cut(s)	266
AccII	CGCG	3 cut(s)	8, 36, 90
AclWI	GGATC	1 cut(s)	1617
AcoI	YGGCCR	5 cut(s)	3, 196, 208, 381, 1564
AcsI	RAATTY	4 cut(s)	334, 412, 474, 1241
AcuI	CTGAAG	2 cut(s)	1308, 1701
AcyI	GRCGYC	1 cut(s)	1102
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	9 cut(s)	157, 286, 303, 327, 386, 687, 992, 1119, 1662
AgeI	ACCGGT	1 cut(s)	83
AgsI	TTSAA	8 cut(s)	70, 139, 166, 343, 417, 941, 1205, 1623
AjnI	CCWGG	2 cut(s)	189, 1566
AjuI	GAANNNNNNNTTGG	2 cut(s)	1536, 1568
AloI	GAACNNNNNNTCC	2 cut(s)	921, 953
AluBI	AGCT	7 cut(s)	57, 518, 646, 842, 1272, 1580, 1696
AluI	AGCT	7 cut(s)	57, 518, 646, 842, 1272, 1580, 1696
Alw21I	GWGCWC	1 cut(s)	1132
Alw26I	GTCTC	4 cut(s)	49, 198, 270, 579
AlwI	GGATC	1 cut(s)	1617
AlwNI	CAGNNNCTG	2 cut(s)	244, 1172
ApeKI	GCWGC	4 cut(s)	114, 839, 842, 1172
ApoI	RAATTY	4 cut(s)	334, 412, 474, 1241
AseI	ATTAAT	1 cut(s)	1472
AsiGI	ACCGGT	1 cut(s)	83
Asp700I	GAANNNNTTC	3 cut(s)	936, 1023, 1352
AspLEI	GCGC	2 cut(s)	16, 998
AspS9I	GGNCC	6 cut(s)	21, 294, 318, 323, 377, 674
AsuC2I	CCSGG	2 cut(s)	322, 327
AsuHPI	GGTGA	2 cut(s)	311, 1028
AsuII	TTCGAA	1 cut(s)	410
AsuNHI	GCTAGC	1 cut(s)	1712
AvaII	GGWCC	3 cut(s)	21, 294, 377
BalI	TGGCCA	1 cut(s)	1566
BanI	GGYRCC	1 cut(s)	1064
BanII	GRGCYC	2 cut(s)	1320, 1441
BauI	CACGAG	1 cut(s)	1440
BbsI	GAAGAC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	1132
BbvI	GCAGC	4 cut(s)	126, 829, 851, 1159
BccI	CCATC	3 cut(s)	416, 1097, 1556
BceAI	ACGGC	3 cut(s)	174, 223, 1535
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	2 cut(s)	191, 1568
BcnI	CCSGG	2 cut(s)	322, 327
BcoDI	GTCTC	4 cut(s)	49, 198, 270, 579
BfaI	CTAG	1 cut(s)	1713
BfmI	CTRYAG	1 cut(s)	591
BfoI	RGCGCY	2 cut(s)	17, 999
BglI	GCCNNNNNGGC	1 cut(s)	11
Bme1390I	CCNGG	4 cut(s)	191, 322, 327, 1568
Bme18I	GGWCC	3 cut(s)	21, 294, 377
BmgT120I	GGNCC	6 cut(s)	21, 294, 318, 323, 377, 674
BmiI	GGNNCC	4 cut(s)	675, 1066, 1317, 1558
BmrFI	CCNGG	4 cut(s)	191, 322, 327, 1568
BmrI	ACTGGG	1 cut(s)	1443
BmsI	GCATC	8 cut(s)	610, 739, 948, 1015, 1159, 1468, 1516, 1630
BmtI	GCTAGC	1 cut(s)	1716
BmuI	ACTGGG	1 cut(s)	1443
BpiI	GAAGAC	1 cut(s)	698
BpmI	CTGGAG	2 cut(s)	948, 1116
Bpu10I	CCTNAGC	2 cut(s)	17, 685
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	668, 1417
BpuMI	CCSGG	2 cut(s)	322, 327
Bsa29I	ATCGAT	1 cut(s)	797
BsaBI	GATNNNNATC	1 cut(s)	1614
BsaHI	GRCGYC	1 cut(s)	1102
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	5 cut(s)	6, 190, 326, 711, 1567
BsaWI	WCCGGW	2 cut(s)	83, 296
BsaXI	ACNNNNNCTCC	6 cut(s)	205, 235, 278, 308, 921, 951
Bsc4I	CCNNNNNNNGG	9 cut(s)	157, 286, 303, 327, 386, 687, 992, 1119, 1662
Bse118I	RCCGGY	4 cut(s)	83, 169, 383, 680
Bse1I	ACTGG	4 cut(s)	1133, 1159, 1438, 1513
Bse3DI	GCAATG	1 cut(s)	741
Bse8I	GATNNNNATC	1 cut(s)	1614
BseBI	CCWGG	2 cut(s)	191, 1568
BseCI	ATCGAT	1 cut(s)	797
BseDI	CCNNGG	5 cut(s)	6, 190, 326, 711, 1567
BseGI	GGATG	6 cut(s)	427, 625, 1006, 1184, 1483, 1645
BseJI	GATNNNNATC	1 cut(s)	1614
BseLI	CCNNNNNNNGG	9 cut(s)	157, 286, 303, 327, 386, 687, 992, 1119, 1662
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	7 cut(s)	31, 590, 699, 779, 888, 1107, 1658
BseNI	ACTGG	4 cut(s)	1133, 1159, 1438, 1513
BseX3I	CGGCCG	2 cut(s)	208, 381
BseXI	GCAGC	4 cut(s)	126, 829, 851, 1159
BsgI	GTGCAG	2 cut(s)	828, 1263
Bsh1236I	CGCG	3 cut(s)	8, 36, 90
Bsh1285I	CGRYCG	3 cut(s)	88, 211, 384
BshNI	GGYRCC	1 cut(s)	1064
BshTI	ACCGGT	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	797
BsiEI	CGRYCG	3 cut(s)	88, 211, 384
BsiHKAI	GWGCWC	1 cut(s)	1132
BslFI	GGGAC	1 cut(s)	982
BslI	CCNNNNNNNGG	9 cut(s)	157, 286, 303, 327, 386, 687, 992, 1119, 1662
BsmAI	GTCTC	4 cut(s)	49, 198, 270, 579
BsmBI	CGTCTC	2 cut(s)	49, 198
BsmFI	GGGAC	1 cut(s)	982
Bso31I	GGTCTC	1 cut(s)	270
Bsp119I	TTCGAA	1 cut(s)	410
Bsp1286I	GDGCHC	3 cut(s)	1132, 1320, 1441
Bsp143I	GATC	2 cut(s)	1291, 1609
BspCNI	CTCAG	7 cut(s)	30, 589, 698, 778, 889, 1106, 1657
BspDI	ATCGAT	1 cut(s)	797
BspFNI	CGCG	3 cut(s)	8, 36, 90
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	4 cut(s)	675, 1066, 1317, 1558
BspMAI	CTGCAG	1 cut(s)	595
BspOI	GCTAGC	1 cut(s)	1716
BspPI	GGATC	1 cut(s)	1617
BspT104I	TTCGAA	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	1064
BspTNI	GGTCTC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	741
BsrFI	RCCGGY	4 cut(s)	83, 169, 383, 680
BsrI	ACTGG	4 cut(s)	1133, 1159, 1438, 1513
BssAI	RCCGGY	4 cut(s)	83, 169, 383, 680
BssECI	CCNNGG	5 cut(s)	6, 190, 326, 711, 1567
BssMI	GATC	2 cut(s)	1291, 1609
BssNI	GRCGYC	1 cut(s)	1102
BssSI	CACGAG	1 cut(s)	1440
BssT1I	CCWWGG	1 cut(s)	711
Bst2BI	CACGAG	1 cut(s)	1440
Bst2UI	CCWGG	2 cut(s)	191, 1568
Bst4CI	ACNGT	4 cut(s)	251, 531, 973, 1254
Bst6I	CTCTTC	2 cut(s)	71, 1539
BstACI	GRCGYC	1 cut(s)	1102
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	1714
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	6 cut(s)	427, 625, 1006, 1184, 1483, 1645
BstFNI	CGCG	3 cut(s)	8, 36, 90
BstH2I	RGCGCY	2 cut(s)	17, 999
BstHHI	GCGC	2 cut(s)	16, 998
BstKTI	GATC	2 cut(s)	1294, 1612
BstMAI	GTCTC	4 cut(s)	49, 198, 270, 579
BstMBI	GATC	2 cut(s)	1291, 1609
BstMCI	CGRYCG	3 cut(s)	88, 211, 384
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 120, 192, 216, 366, 1415, 1649
BstNI	CCWGG	2 cut(s)	191, 1568
BstNSI	RCATGY	2 cut(s)	79, 1720
BstSCI	CCNGG	4 cut(s)	189, 320, 325, 1566
BstSFI	CTRYAG	1 cut(s)	591
BstUI	CGCG	3 cut(s)	8, 36, 90
BstV1I	GCAGC	4 cut(s)	126, 829, 851, 1159
BstV2I	GAAGAC	1 cut(s)	698
BstXI	CCANNNNNNTGG	1 cut(s)	1574
BstZI	CGGCCG	2 cut(s)	208, 381
Bsu15I	ATCGAT	1 cut(s)	797
BsuTUI	ATCGAT	1 cut(s)	797
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	6 cut(s)	427, 625, 1006, 1184, 1483, 1645
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	226, 1431
Cac8I	GCNNGC	1 cut(s)	1714
CaiI	CAGNNNCTG	2 cut(s)	244, 1172
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	2 cut(s)	16, 998
Cfr10I	RCCGGY	4 cut(s)	83, 169, 383, 680
Cfr13I	GGNCC	6 cut(s)	21, 294, 318, 323, 377, 674
Cfr42I	CCGCGG	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	797
CseI	GACGC	2 cut(s)	79, 1110
Csp6I	GTAC	1 cut(s)	527
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	5 cut(s)	76, 569, 625, 1147, 1717
CviQI	GTAC	1 cut(s)	527
DpnI	GATC	2 cut(s)	1293, 1611
DpnII	GATC	2 cut(s)	1291, 1609
EaeI	YGGCCR	5 cut(s)	3, 196, 208, 381, 1564
EagI	CGGCCG	2 cut(s)	208, 381
Eam1104I	CTCTTC	2 cut(s)	71, 1539
EarI	CTCTTC	2 cut(s)	71, 1539
EclXI	CGGCCG	2 cut(s)	208, 381
Eco130I	CCWWGG	1 cut(s)	711
Eco24I	GRGCYC	2 cut(s)	1320, 1441
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	3 cut(s)	21, 294, 377
Eco52I	CGGCCG	2 cut(s)	208, 381
Eco57I	CTGAAG	2 cut(s)	1308, 1701
EcoRI	GAATTC	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	189, 1566
EcoT14I	CCWWGG	1 cut(s)	711
EcoT22I	ATGCAT	1 cut(s)	1330
EcoT38I	GRGCYC	2 cut(s)	1320, 1441
ErhI	CCWWGG	1 cut(s)	711
Esp3I	CGTCTC	2 cut(s)	49, 198
FaeI	CATG	5 cut(s)	79, 572, 628, 1150, 1720
FalI	AAGNNNNNCTT	2 cut(s)	1680, 1712
FaqI	GGGAC	1 cut(s)	982
FatI	CATG	5 cut(s)	75, 568, 624, 1146, 1716
FauI	CCCGC	2 cut(s)	41, 288
FauNDI	CATATG	1 cut(s)	1055
FblI	GTMKAC	1 cut(s)	266
FokI	GGATG	6 cut(s)	434, 632, 993, 1171, 1490, 1652
FriOI	GRGCYC	2 cut(s)	1320, 1441
FspBI	CTAG	1 cut(s)	1713
GlaI	GCGC	2 cut(s)	15, 997
GsuI	CTGGAG	2 cut(s)	948, 1116
HaeII	RGCGCY	2 cut(s)	17, 999
HgaI	GACGC	2 cut(s)	79, 1110
HhaI	GCGC	2 cut(s)	16, 998
Hin1I	GRCGYC	1 cut(s)	1102
Hin1II	CATG	5 cut(s)	79, 572, 628, 1150, 1720
Hin6I	GCGC	2 cut(s)	14, 996
HinP1I	GCGC	2 cut(s)	14, 996
HincII	GTYRAC	2 cut(s)	267, 877
HindII	GTYRAC	2 cut(s)	267, 877
HinfI	GANTC	8 cut(s)	38, 313, 407, 572, 599, 794, 1109, 1492
HphI	GGTGA	2 cut(s)	311, 1028
Hpy166II	GTNNAC	3 cut(s)	267, 544, 877
Hpy188I	TCNGA	5 cut(s)	1029, 1096, 1358, 1647, 1669
Hpy188III	TCNNGA	5 cut(s)	569, 767, 927, 986, 1496
Hpy8I	GTNNAC	3 cut(s)	267, 544, 877
Hpy99I	CGWCG	4 cut(s)	95, 98, 128, 271
HpyAV	CCTTC	8 cut(s)	172, 337, 517, 926, 959, 1630, 1655, 1676
HpyCH4III	ACNGT	4 cut(s)	251, 531, 973, 1254
HpyCH4IV	ACGT	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 120, 192, 216, 366, 1415, 1649
HpySE526I	ACGT	1 cut(s)	269
Hsp92I	GRCGYC	1 cut(s)	1102
Hsp92II	CATG	5 cut(s)	79, 572, 628, 1150, 1720
HspAI	GCGC	2 cut(s)	14, 996
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	1291, 1609
LmnI	GCTCC	4 cut(s)	643, 1135, 1315, 1577
Lsp1109I	GCAGC	4 cut(s)	126, 829, 851, 1159
LweI	GCATC	8 cut(s)	610, 739, 948, 1015, 1159, 1468, 1516, 1630
MaeI	CTAG	1 cut(s)	1713
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	5 cut(s)	299, 605, 1162, 1177, 1211
MalI	GATC	2 cut(s)	1293, 1611
MboI	GATC	2 cut(s)	1291, 1609
MboII	GAAGA	7 cut(s)	58, 127, 703, 797, 1301, 1360, 1556
MhlI	GDGCHC	3 cut(s)	1132, 1320, 1441
MlsI	TGGCCA	1 cut(s)	1566
MluNI	TGGCCA	1 cut(s)	1566
MlyI	GAGTC	2 cut(s)	32, 581
MmeI	TCCRAC	3 cut(s)	1228, 1396, 1534
Mox20I	TGGCCA	1 cut(s)	1566
Mph1103I	ATGCAT	1 cut(s)	1330
MroXI	GAANNNNTTC	3 cut(s)	936, 1023, 1352
MscI	TGGCCA	1 cut(s)	1566
MseI	TTAA	2 cut(s)	761, 1472
Msp20I	TGGCCA	1 cut(s)	1566
MspA1I	CMGCKG	2 cut(s)	8, 842
MspR9I	CCNGG	4 cut(s)	191, 322, 327, 1568
MvaI	CCWGG	2 cut(s)	191, 1568
MvnI	CGCG	3 cut(s)	8, 36, 90
MwoI	GCNNNNNNNGC	7 cut(s)	11, 120, 192, 216, 366, 1415, 1649
NciI	CCSGG	2 cut(s)	322, 327
NdeI	CATATG	1 cut(s)	1055
NdeII	GATC	2 cut(s)	1291, 1609
NheI	GCTAGC	1 cut(s)	1712
NlaIII	CATG	5 cut(s)	79, 572, 628, 1150, 1720
NlaIV	GGNNCC	4 cut(s)	675, 1066, 1317, 1558
NmeAIII	GCCGAG	1 cut(s)	1717
NmuCI	GTSAC	2 cut(s)	299, 1211
NsiI	ATGCAT	1 cut(s)	1330
NspI	RCATGY	2 cut(s)	79, 1720
NspV	TTCGAA	1 cut(s)	410
PagI	TCATGA	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	1 cut(s)	1447
PdmI	GAANNNNTTC	3 cut(s)	936, 1023, 1352
PfeI	GAWTC	6 cut(s)	313, 407, 599, 794, 1109, 1492
PflFI	GACNNNGTC	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	83
PleI	GAGTC	2 cut(s)	32, 580
PpsI	GAGTC	2 cut(s)	32, 580
PshBI	ATTAAT	1 cut(s)	1472
PsiI	TTATAA	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	189, 1566
PspGI	CCWGG	2 cut(s)	189, 1566
PspN4I	GGNNCC	4 cut(s)	675, 1066, 1317, 1558
PspPI	GGNCC	6 cut(s)	21, 294, 318, 323, 377, 674
PstI	CTGCAG	1 cut(s)	595
PstNI	CAGNNNCTG	2 cut(s)	244, 1172
PsyI	GACNNNGTC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SacII	CCGCGG	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	265
SaqAI	TTAA	2 cut(s)	761, 1472
Sau3AI	GATC	2 cut(s)	1291, 1609
Sau96I	GGNCC	6 cut(s)	21, 294, 318, 323, 377, 674
SchI	GAGTC	2 cut(s)	32, 581
ScrFI	CCNGG	4 cut(s)	191, 322, 327, 1568
SduI	GDGCHC	3 cut(s)	1132, 1320, 1441
SfaNI	GCATC	8 cut(s)	610, 739, 948, 1015, 1159, 1468, 1516, 1630
SfcI	CTRYAG	1 cut(s)	591
Sfr303I	CCGCGG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	410
SgrBI	CCGCGG	1 cut(s)	9
SinI	GGWCC	3 cut(s)	21, 294, 377
SmlI	CTYRAG	2 cut(s)	647, 1396
SmoI	CTYRAG	2 cut(s)	647, 1396
SspI	AATATT	2 cut(s)	661, 1024
SspMI	CTAG	1 cut(s)	1713
StyD4I	CCNGG	4 cut(s)	189, 320, 325, 1566
StyI	CCWWGG	1 cut(s)	711
TaaI	ACNGT	4 cut(s)	251, 531, 973, 1254
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	7 cut(s)	266, 332, 410, 797, 1000, 1074, 1222
TauI	GCSGC	7 cut(s)	8, 11, 14, 198, 363, 366, 369
TfiI	GAWTC	6 cut(s)	313, 407, 599, 794, 1109, 1492
Tru1I	TTAA	2 cut(s)	761, 1472
Tru9I	TTAA	2 cut(s)	761, 1472
TscAI	CASTG	2 cut(s)	226, 1438
TseFI	GTSAC	2 cut(s)	299, 1211
TseI	GCWGC	4 cut(s)	114, 839, 842, 1172
Tsp45I	GTSAC	2 cut(s)	299, 1211
TspDTI	ATGAA	6 cut(s)	641, 885, 1042, 1376, 1557, 1689
TspGWI	ACGGA	3 cut(s)	31, 1328, 1400
TspRI	CASTG	2 cut(s)	226, 1438
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	3 cut(s)	21, 294, 377
VspI	ATTAAT	1 cut(s)	1472
XapI	RAATTY	4 cut(s)	334, 412, 474, 1241
XceI	RCATGY	2 cut(s)	79, 1720
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1327
XmiI	GTMKAC	1 cut(s)	266
XmnI	GAANNNNTTC	3 cut(s)	936, 1023, 1352
XspI	CTAG	1 cut(s)	1713
Zsp2I	ATGCAT	1 cut(s)	1330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.