ATP-dependent Clp protease ATP-binding subunit clpX-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G53350 |
| fragaria_vesca | FvH4_7g31580 |
| malus_domestica | MD01G1218600.v1.1 MD07G1288500.v1.1 |
| prunus_persica | Prupe.2G310000_v2.0.a1 |
| pyrus_communis | pycom01g22850 pycom07g26110 |
| rosa_chinensis | RchiOBHm_Chr1g0380581 |
| rosa_laevigata | RLG00000026283 |
| rosa_multiflora | Rmu_ssc0000015.1_g000011 |
| rosa_roxburghii | Rroxscaffold_4G00279170 |
| rosa_rugosa | Rorug01G0422700 |
| rosa_samantha | Rh1AG447200 Rh1BG402500 Rh1CG417000 Rh1DG432700 |
| rosa_wichuraiana | Rw1G038900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 181 |
| AfaI | GTAC | 1 cut(s) | 55 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 181 |
| AsuHPI | GGTGA | 1 cut(s) | 28 |
| BmsI | GCATC | 1 cut(s) | 61 |
| Bsa29I | ATCGAT | 1 cut(s) | 41 |
| BsaAI | YACGTR | 1 cut(s) | 57 |
| BsaBI | GATNNNNATC | 1 cut(s) | 120 |
| BsaWI | WCCGGW | 1 cut(s) | 13 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 181 |
| Bse8I | GATNNNNATC | 1 cut(s) | 120 |
| BseCI | ATCGAT | 1 cut(s) | 41 |
| BseGI | GGATG | 1 cut(s) | 39 |
| BseJI | GATNNNNATC | 1 cut(s) | 120 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 181 |
| BseRI | GAGGAG | 1 cut(s) | 148 |
| BshVI | ATCGAT | 1 cut(s) | 41 |
| BsiSI | CCGG | 1 cut(s) | 14 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 181 |
| Bsp143I | GATC | 3 cut(s) | 38, 45, 121 |
| BspDI | ATCGAT | 1 cut(s) | 41 |
| BssMI | GATC | 3 cut(s) | 38, 45, 121 |
| BstBAI | YACGTR | 1 cut(s) | 57 |
| BstC8I | GCNNGC | 1 cut(s) | 162 |
| BstF5I | GGATG | 1 cut(s) | 39 |
| BstKTI | GATC | 3 cut(s) | 41, 48, 124 |
| BstMBI | GATC | 3 cut(s) | 38, 45, 121 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 161 |
| BstSNI | TACGTA | 1 cut(s) | 57 |
| Bsu15I | ATCGAT | 1 cut(s) | 41 |
| BsuTUI | ATCGAT | 1 cut(s) | 41 |
| BtsCI | GGATG | 1 cut(s) | 39 |
| Cac8I | GCNNGC | 1 cut(s) | 162 |
| ClaI | ATCGAT | 1 cut(s) | 41 |
| Csp6I | GTAC | 1 cut(s) | 54 |
| CviAII | CATG | 2 cut(s) | 109, 130 |
| CviJI | RGCY | 1 cut(s) | 155 |
| CviKI_1 | RGCY | 1 cut(s) | 155 |
| CviQI | GTAC | 1 cut(s) | 54 |
| DpnI | GATC | 3 cut(s) | 40, 47, 123 |
| DpnII | GATC | 3 cut(s) | 38, 45, 121 |
| Eco105I | TACGTA | 1 cut(s) | 57 |
| FaeI | CATG | 2 cut(s) | 112, 133 |
| FaiI | YATR | 3 cut(s) | 60, 110, 131 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 144, 176 |
| FatI | CATG | 2 cut(s) | 108, 129 |
| FokI | GGATG | 1 cut(s) | 46 |
| HapII | CCGG | 1 cut(s) | 14 |
| Hin1II | CATG | 2 cut(s) | 112, 133 |
| HpaII | CCGG | 1 cut(s) | 14 |
| HphI | GGTGA | 1 cut(s) | 28 |
| Hpy99I | CGWCG | 1 cut(s) | 31 |
| HpyAV | CCTTC | 2 cut(s) | 135, 205 |
| HpyCH4IV | ACGT | 1 cut(s) | 56 |
| HpyCH4V | TGCA | 1 cut(s) | 99 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 161 |
| HpySE526I | ACGT | 1 cut(s) | 56 |
| Hsp92II | CATG | 2 cut(s) | 112, 133 |
| Kzo9I | GATC | 3 cut(s) | 38, 45, 121 |
| LmnI | GCTCC | 1 cut(s) | 184 |
| LpnPI | CCDG | 1 cut(s) | 27 |
| LweI | GCATC | 1 cut(s) | 61 |
| MaeII | ACGT | 1 cut(s) | 56 |
| MalI | GATC | 3 cut(s) | 40, 47, 123 |
| MboI | GATC | 3 cut(s) | 38, 45, 121 |
| MnlI | CCTC | 4 cut(s) | 12, 24, 126, 166 |
| MspI | CCGG | 1 cut(s) | 14 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 161 |
| NdeII | GATC | 3 cut(s) | 38, 45, 121 |
| NlaIII | CATG | 2 cut(s) | 112, 133 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 181 |
| Ppu21I | YACGTR | 1 cut(s) | 57 |
| RsaI | GTAC | 1 cut(s) | 55 |
| RsaNI | GTAC | 1 cut(s) | 54 |
| Sau3AI | GATC | 3 cut(s) | 38, 45, 121 |
| SetI | ASST | 2 cut(s) | 59, 197 |
| SfaNI | GCATC | 1 cut(s) | 61 |
| SgeI | CNNG | 9 cut(s) | 26, 42, 116, 121, 142, 164, 169, 173, 193 |
| SnaBI | TACGTA | 1 cut(s) | 57 |
| SspI | AATATT | 1 cut(s) | 10 |
| TaiI | ACGT | 1 cut(s) | 59 |
| TaqI | TCGA | 2 cut(s) | 29, 41 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 181 |