Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0013903

Physical Location & Seq

Genomic Coordinates Forward (+)

66716032 .. 66740348

Gene Structure 24317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG447200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGGCCGCGGCGGCGCTCAGGTCCAAACCCTCCCGCGACTCCGTCTCGCAATTCAGCTACTTCCTCTTCAATTACATGCACACGGGTCGCGTCGTCGCCAATTCTCACTACCGCACCAAAGGCGACGACTTGTTCGTCAACACTCCCTACCACTTCACGGCCTTCAAGCCGGTGTCGTTTTCCGGCAACCTGGGCGGCCAGAGAGACGGCCGGAGTAGCAGTGATAGGACCTTGGGGCAGAAAATGAATAGTAATAGTGTTATGTCGACGTATGGAGACCCGCCGGAGGTTTGGTCCGGTGACGGGATTGTGATTCGGGCCGGGCCGGGATCGAATATGGTCAAGGGCGGCGGCGGCGGGGGTGGTGGTGGTGGTGGTGGTCCGGCCGGTGGTGGAGGTGGAGGGTTTGATTCGAATTCAAAGGATGGGTGTTGGGGTGGGTCTAATCTGGGGAGTAGTTTTCCTACTCCAAAGGAAATTTGTAAAGGGCTTGATAAGTTTGTAATTGGGCAAGAGAGAGCTAAGAAGGTATTGTCTGTTGCTGTTTACAATCATTATAAGAGGATACATCATGAGTCTCAGCAGAAGTGGTCTGCAGGAGATTCAGGTAACAACAAAGCGGATGCTATGAATGATGATAGAGTGGAGCTTGAGAAAAGTAATATTCTTGTAATGGGGCCAACCGGGTCAGGGAAGACACTACTTGCTAAAACCCTGGCACGTTTTGTGAATGTTCCCTTTGTCATTGCAGATGCAACAACATTAACTCAGGAAAGATATGTCGGGGAAGATGTGGAATCGATTTTATACAAACTTCTTTCGGTTGCTGATTACAATGTGGCAGCTGCACAACAAGGAATTGTTTATATTGATGAAGTTGACAAGATTACCAAAAAGGCTGAGAGCCTAAATATCAGCAGAGATGTATCTGGAGAAGGTGTTCAACAAGCATTACTAAAGATGCTGGAAGGGACAGTTGTAAATGTTCCAGAAAAGGGCGCTCGAAAGCATCCAAGAGGTGAAAATATTCAGATTGACACAAAGGATATTCTTTTCATATGTGGGGGTGCCTTTATCGACTTAGAGAAAACCATCTCAGAAAGACGCCAAGATTCCTCTATTGGGTTTGGTGCTCCAGTTAGAGCAAACATGAGAACTGGTGGTGTTACAGATGCTGCGGTTACATCATCCTTATTGGAGATTGTTGAAAGTAGTGACCTTATTCGATATGGTTTGATACCTGAATTTGTTGGACGGTTTCCTATCCTTGTCAGCTTATCTGCACTAACTGAAGATCAATTAGTTCAGGTTCTAACGGAGCCCAAAAATGCATTGGGGAAGCAATACAAGAAGATGTTCCGAATGAATGACGTCCAACTGCATTTCACGGAAAGTGGCTTGAGGCTAATTGCTAAGAAAGCAATATCAAAGAACACTGGGGCTCGTGGATTACGAGCAATTTTAGAAACTATATTAACGGATACCATGTATGAGATTCCTGACGTTAGAACTGGTGATGACATAATAGATGCAGTTGTAATTGATGAAGAGGCAGTTGGAACTGATGGCCAGGGTTGTGGAGCTAAGATCCTTTATGGTAAGGGTGCATTGGATCAGTATCTTTCAAAAAATAAAGAGAAGGATGCTCAGGTATGTAATTTATCCACATATATTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

559

Amino Acids

60.09

Weight (kDa)

7.6

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	218 - 422	3.3e-30	AAA domain (Cdc48 subfamily)
AAA	PF00004	222 - 328	2.7e-14	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	429 - 498	2.1e-09	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53350
fragaria_vesca	FvH4_7g31580
malus_domestica	MD01G1218600.v1.1 MD07G1288500.v1.1
prunus_persica	Prupe.2G310000_v2.0.a1
pyrus_communis	pycom01g22850 pycom07g26110
rosa_chinensis	RchiOBHm_Chr1g0380581
rosa_laevigata	RLG00000026283
rosa_multiflora	Rmu_ssc0000015.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279170
rosa_rugosa	Rorug01G0422700
rosa_samantha	Rh1AG447200 Rh1BG402500 Rh1CG417000 Rh1DG432700
rosa_wichuraiana	Rw1G038900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AasI	GACNNNNNNGTC	1 cut(s)	134
AatII	GACGTC	1 cut(s)	1374
AccB1I	GGYRCC	1 cut(s)	1067
AccI	GTMKAC	1 cut(s)	266
AccII	CGCG	3 cut(s)	8, 36, 90
AclWI	GGATC	3 cut(s)	337, 1582, 1620
AcoI	YGGCCR	5 cut(s)	3, 196, 208, 384, 1567
AcsI	RAATTY	3 cut(s)	415, 477, 1244
AcuI	CTGAAG	1 cut(s)	1311
AcyI	GRCGYC	2 cut(s)	1105, 1371
AfiI	CCNNNNNNNGG	7 cut(s)	157, 286, 303, 389, 690, 995, 1122
AgsI	TTSAA	6 cut(s)	70, 166, 420, 944, 1208, 1626
AjnI	CCWGG	3 cut(s)	189, 714, 1569
AjuI	GAANNNNNNNTTGG	2 cut(s)	1539, 1571
AloI	GAACNNNNNNTCC	2 cut(s)	924, 956
AluBI	AGCT	6 cut(s)	57, 521, 649, 845, 1275, 1583
AluI	AGCT	6 cut(s)	57, 521, 649, 845, 1275, 1583
Alw21I	GWGCWC	1 cut(s)	1135
Alw26I	GTCTC	4 cut(s)	49, 198, 270, 582
AlwI	GGATC	3 cut(s)	337, 1582, 1620
AlwNI	CAGNNNCTG	1 cut(s)	1175
AoxI	GGCC	9 cut(s)	3, 159, 196, 208, 318, 323, 384, 677, 1567
ApeKI	GCWGC	3 cut(s)	842, 845, 1175
ApoI	RAATTY	3 cut(s)	415, 477, 1244
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
Asp700I	GAANNNNTTC	3 cut(s)	939, 1026, 1355
AspLEI	GCGC	2 cut(s)	16, 1001
AspS9I	GGNCC	7 cut(s)	21, 228, 294, 318, 323, 380, 677
AsuC2I	CCSGG	3 cut(s)	322, 327, 685
AsuHPI	GGTGA	3 cut(s)	311, 1031, 1526
AsuII	TTCGAA	1 cut(s)	413
AvaII	GGWCC	4 cut(s)	21, 228, 294, 380
BalI	TGGCCA	1 cut(s)	1569
BanI	GGYRCC	1 cut(s)	1067
BanII	GRGCYC	2 cut(s)	1323, 1444
BauI	CACGAG	1 cut(s)	1443
BbsI	GAAGAC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	1135
BbvI	GCAGC	3 cut(s)	832, 854, 1162
BccI	CCATC	3 cut(s)	419, 1100, 1559
BceAI	ACGGC	2 cut(s)	174, 223
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	3 cut(s)	191, 716, 1571
BciVI	GTATCC	2 cut(s)	558, 1474
BcnI	CCSGG	3 cut(s)	322, 327, 685
BcoDI	GTCTC	4 cut(s)	49, 198, 270, 582
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	2 cut(s)	17, 1002
BfuI	GTATCC	2 cut(s)	558, 1474
BglI	GCCNNNNNGGC	1 cut(s)	11
Bme1390I	CCNGG	6 cut(s)	191, 322, 327, 685, 716, 1571
Bme18I	GGWCC	4 cut(s)	21, 228, 294, 380
BmgT120I	GGNCC	7 cut(s)	21, 228, 294, 318, 323, 380, 677
BmiI	GGNNCC	3 cut(s)	678, 1069, 1320
BmrFI	CCNGG	6 cut(s)	191, 322, 327, 685, 716, 1571
BmrI	ACTGGG	1 cut(s)	1446
BmsI	GCATC	7 cut(s)	613, 742, 951, 1018, 1162, 1519, 1633
BmuI	ACTGGG	1 cut(s)	1446
BpiI	GAAGAC	1 cut(s)	701
BpmI	CTGGAG	2 cut(s)	951, 1119
Bpu10I	CCTNAGC	2 cut(s)	17, 1647
Bpu14I	TTCGAA	1 cut(s)	413
BpuEI	CTTGAG	2 cut(s)	671, 1420
BpuMI	CCSGG	3 cut(s)	322, 327, 685
Bsa29I	ATCGAT	1 cut(s)	800
BsaBI	GATNNNNATC	1 cut(s)	1617
BsaHI	GRCGYC	2 cut(s)	1105, 1371
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	5 cut(s)	6, 190, 231, 714, 1570
BsaWI	WCCGGW	1 cut(s)	296
BsaXI	ACNNNNNCTCC	6 cut(s)	205, 235, 278, 308, 924, 954
Bsc4I	CCNNNNNNNGG	7 cut(s)	157, 286, 303, 389, 690, 995, 1122
Bse118I	RCCGGY	2 cut(s)	169, 386
Bse1I	ACTGG	4 cut(s)	1136, 1162, 1441, 1516
Bse3DI	GCAATG	1 cut(s)	744
Bse8I	GATNNNNATC	1 cut(s)	1617
BseBI	CCWGG	3 cut(s)	191, 716, 1571
BseCI	ATCGAT	1 cut(s)	800
BseDI	CCNNGG	5 cut(s)	6, 190, 231, 714, 1570
BseGI	GGATG	5 cut(s)	430, 628, 1009, 1187, 1648
BseJI	GATNNNNATC	1 cut(s)	1617
BseLI	CCNNNNNNNGG	7 cut(s)	157, 286, 303, 389, 690, 995, 1122
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	6 cut(s)	31, 593, 782, 891, 1110, 1661
BseNI	ACTGG	4 cut(s)	1136, 1162, 1441, 1516
BseX3I	CGGCCG	2 cut(s)	208, 384
BseXI	GCAGC	3 cut(s)	832, 854, 1162
BsgI	GTGCAG	2 cut(s)	831, 1266
Bsh1236I	CGCG	3 cut(s)	8, 36, 90
Bsh1285I	CGRYCG	2 cut(s)	211, 387
BshFI	GGCC	9 cut(s)	5, 161, 198, 210, 320, 325, 386, 679, 1569
BshNI	GGYRCC	1 cut(s)	1067
BshVI	ATCGAT	1 cut(s)	800
BsiEI	CGRYCG	2 cut(s)	211, 387
BsiHKAI	GWGCWC	1 cut(s)	1135
BslFI	GGGAC	1 cut(s)	985
BslI	CCNNNNNNNGG	7 cut(s)	157, 286, 303, 389, 690, 995, 1122
BsmAI	GTCTC	4 cut(s)	49, 198, 270, 582
BsmBI	CGTCTC	2 cut(s)	49, 198
BsmFI	GGGAC	1 cut(s)	985
BsnI	GGCC	9 cut(s)	5, 161, 198, 210, 320, 325, 386, 679, 1569
Bso31I	GGTCTC	1 cut(s)	270
Bsp119I	TTCGAA	1 cut(s)	413
Bsp1286I	GDGCHC	3 cut(s)	1135, 1323, 1444
Bsp143I	GATC	4 cut(s)	329, 1294, 1587, 1612
BspANI	GGCC	9 cut(s)	5, 161, 198, 210, 320, 325, 386, 679, 1569
BspCNI	CTCAG	6 cut(s)	30, 592, 781, 892, 1109, 1660
BspDI	ATCGAT	1 cut(s)	800
BspFNI	CGCG	3 cut(s)	8, 36, 90
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	3 cut(s)	678, 1069, 1320
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	3 cut(s)	337, 1582, 1620
BspT104I	TTCGAA	1 cut(s)	413
BspT107I	GGYRCC	1 cut(s)	1067
BspTNI	GGTCTC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	744
BsrFI	RCCGGY	2 cut(s)	169, 386
BsrI	ACTGG	4 cut(s)	1136, 1162, 1441, 1516
BssAI	RCCGGY	2 cut(s)	169, 386
BssECI	CCNNGG	5 cut(s)	6, 190, 231, 714, 1570
BssMI	GATC	4 cut(s)	329, 1294, 1587, 1612
BssNI	GRCGYC	2 cut(s)	1105, 1371
BssSI	CACGAG	1 cut(s)	1443
BssT1I	CCWWGG	1 cut(s)	231
Bst2BI	CACGAG	1 cut(s)	1443
Bst2UI	CCWGG	3 cut(s)	191, 716, 1571
Bst4CI	ACNGT	2 cut(s)	976, 1257
Bst6I	CTCTTC	2 cut(s)	71, 1542
BstACI	GRCGYC	2 cut(s)	1105, 1371
BstBI	TTCGAA	1 cut(s)	413
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	5 cut(s)	430, 628, 1009, 1187, 1648
BstFNI	CGCG	3 cut(s)	8, 36, 90
BstH2I	RGCGCY	2 cut(s)	17, 1002
BstHHI	GCGC	2 cut(s)	16, 1001
BstKTI	GATC	4 cut(s)	332, 1297, 1590, 1615
BstMAI	GTCTC	4 cut(s)	49, 198, 270, 582
BstMBI	GATC	4 cut(s)	329, 1294, 1587, 1612
BstMCI	CGRYCG	2 cut(s)	211, 387
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 120, 192, 216, 354, 1418
BstNI	CCWGG	3 cut(s)	191, 716, 1571
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	6 cut(s)	189, 320, 325, 683, 714, 1569
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	3 cut(s)	8, 36, 90
BstV1I	GCAGC	3 cut(s)	832, 854, 1162
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	1 cut(s)	1587
BstXI	CCANNNNNNTGG	1 cut(s)	1577
BstYI	RGATCY	1 cut(s)	1587
BstZI	CGGCCG	2 cut(s)	208, 384
Bsu15I	ATCGAT	1 cut(s)	800
BsuI	GTATCC	2 cut(s)	558, 1474
BsuRI	GGCC	9 cut(s)	5, 161, 198, 210, 320, 325, 386, 679, 1569
BsuTUI	ATCGAT	1 cut(s)	800
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	5 cut(s)	430, 628, 1009, 1187, 1648
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	226, 1434
CaiI	CAGNNNCTG	1 cut(s)	1175
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	2 cut(s)	16, 1001
Cfr10I	RCCGGY	2 cut(s)	169, 386
Cfr13I	GGNCC	7 cut(s)	21, 228, 294, 318, 323, 380, 677
Cfr42I	CCGCGG	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	800
CseI	GACGC	2 cut(s)	79, 1113
CviAII	CATG	4 cut(s)	76, 572, 1150, 1486
DpnI	GATC	4 cut(s)	331, 1296, 1589, 1614
DpnII	GATC	4 cut(s)	329, 1294, 1587, 1612
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	5 cut(s)	3, 196, 208, 384, 1567
EagI	CGGCCG	2 cut(s)	208, 384
Eam1104I	CTCTTC	2 cut(s)	71, 1542
EarI	CTCTTC	2 cut(s)	71, 1542
EclXI	CGGCCG	2 cut(s)	208, 384
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	2 cut(s)	1323, 1444
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	4 cut(s)	21, 228, 294, 380
Eco52I	CGGCCG	2 cut(s)	208, 384
Eco57I	CTGAAG	1 cut(s)	1311
EcoO109I	RGGNCCY	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	3 cut(s)	189, 714, 1569
EcoT14I	CCWWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	1333
EcoT38I	GRGCYC	2 cut(s)	1323, 1444
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	2 cut(s)	49, 198
FaeI	CATG	4 cut(s)	79, 575, 1153, 1489
FaqI	GGGAC	1 cut(s)	985
FatI	CATG	4 cut(s)	75, 571, 1149, 1485
FauI	CCCGC	3 cut(s)	41, 288, 350
FauNDI	CATATG	1 cut(s)	1058
FblI	GTMKAC	1 cut(s)	266
FokI	GGATG	5 cut(s)	437, 635, 996, 1174, 1655
FriOI	GRGCYC	2 cut(s)	1323, 1444
GlaI	GCGC	2 cut(s)	15, 1000
GsuI	CTGGAG	2 cut(s)	951, 1119
HaeII	RGCGCY	2 cut(s)	17, 1002
HaeIII	GGCC	9 cut(s)	5, 161, 198, 210, 320, 325, 386, 679, 1569
HgaI	GACGC	2 cut(s)	79, 1113
HhaI	GCGC	2 cut(s)	16, 1001
Hin1I	GRCGYC	2 cut(s)	1105, 1371
Hin1II	CATG	4 cut(s)	79, 575, 1153, 1489
Hin6I	GCGC	2 cut(s)	14, 999
HinP1I	GCGC	2 cut(s)	14, 999
HincII	GTYRAC	3 cut(s)	139, 267, 880
HindII	GTYRAC	3 cut(s)	139, 267, 880
HinfI	GANTC	8 cut(s)	38, 313, 410, 575, 602, 797, 1112, 1495
HphI	GGTGA	3 cut(s)	311, 1031, 1526
Hpy166II	GTNNAC	4 cut(s)	139, 267, 547, 880
Hpy188I	TCNGA	3 cut(s)	1032, 1099, 1361
Hpy188III	TCNNGA	5 cut(s)	572, 770, 930, 989, 1499
Hpy8I	GTNNAC	4 cut(s)	139, 267, 547, 880
Hpy99I	CGWCG	4 cut(s)	95, 98, 128, 271
HpyAV	CCTTC	5 cut(s)	172, 520, 929, 962, 1633
HpyCH4III	ACNGT	2 cut(s)	976, 1257
HpyCH4IV	ACGT	4 cut(s)	269, 721, 1371, 1503
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 120, 192, 216, 354, 1418
HpySE526I	ACGT	4 cut(s)	269, 721, 1371, 1503
Hsp92I	GRCGYC	2 cut(s)	1105, 1371
Hsp92II	CATG	4 cut(s)	79, 575, 1153, 1489
HspAI	GCGC	2 cut(s)	14, 999
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	329, 1294, 1587, 1612
LmnI	GCTCC	4 cut(s)	646, 1138, 1318, 1580
Lsp1109I	GCAGC	3 cut(s)	832, 854, 1162
LweI	GCATC	7 cut(s)	613, 742, 951, 1018, 1162, 1519, 1633
MaeII	ACGT	4 cut(s)	269, 721, 1371, 1503
MaeIII	GTNAC	5 cut(s)	299, 608, 1165, 1180, 1214
MalI	GATC	4 cut(s)	331, 1296, 1589, 1614
MboI	GATC	4 cut(s)	329, 1294, 1587, 1612
MboII	GAAGA	6 cut(s)	58, 706, 800, 1304, 1363, 1559
MflI	RGATCY	1 cut(s)	1587
MhlI	GDGCHC	3 cut(s)	1135, 1323, 1444
MlsI	TGGCCA	1 cut(s)	1569
MluNI	TGGCCA	1 cut(s)	1569
MlyI	GAGTC	2 cut(s)	32, 584
MmeI	TCCRAC	3 cut(s)	1231, 1399, 1537
Mox20I	TGGCCA	1 cut(s)	1569
Mph1103I	ATGCAT	1 cut(s)	1333
MroXI	GAANNNNTTC	3 cut(s)	939, 1026, 1355
MscI	TGGCCA	1 cut(s)	1569
MseI	TTAA	3 cut(s)	764, 1475, 1678
Msp20I	TGGCCA	1 cut(s)	1569
MspA1I	CMGCKG	2 cut(s)	8, 845
MspR9I	CCNGG	6 cut(s)	191, 322, 327, 685, 716, 1571
MvaI	CCWGG	3 cut(s)	191, 716, 1571
MvnI	CGCG	3 cut(s)	8, 36, 90
MwoI	GCNNNNNNNGC	6 cut(s)	11, 120, 192, 216, 354, 1418
NciI	CCSGG	3 cut(s)	322, 327, 685
NdeI	CATATG	1 cut(s)	1058
NdeII	GATC	4 cut(s)	329, 1294, 1587, 1612
NlaIII	CATG	4 cut(s)	79, 575, 1153, 1489
NlaIV	GGNNCC	3 cut(s)	678, 1069, 1320
NmuCI	GTSAC	2 cut(s)	299, 1214
NsiI	ATGCAT	1 cut(s)	1333
NspI	RCATGY	1 cut(s)	79
NspV	TTCGAA	1 cut(s)	413
PagI	TCATGA	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 1450
PdmI	GAANNNNTTC	3 cut(s)	939, 1026, 1355
PfeI	GAWTC	6 cut(s)	313, 410, 602, 797, 1112, 1495
PflFI	GACNNNGTC	1 cut(s)	41
PleI	GAGTC	2 cut(s)	32, 583
PpsI	GAGTC	2 cut(s)	32, 583
PpuMI	RGGWCCY	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	228
Psp6I	CCWGG	3 cut(s)	189, 714, 1569
PspGI	CCWGG	3 cut(s)	189, 714, 1569
PspN4I	GGNNCC	3 cut(s)	678, 1069, 1320
PspPI	GGNCC	7 cut(s)	21, 228, 294, 318, 323, 380, 677
PspPPI	RGGWCCY	1 cut(s)	228
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	1175
PsuI	RGATCY	1 cut(s)	1587
PsyI	GACNNNGTC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	845
SacII	CCGCGG	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	265
SaqAI	TTAA	3 cut(s)	764, 1475, 1678
Sau3AI	GATC	4 cut(s)	329, 1294, 1587, 1612
Sau96I	GGNCC	7 cut(s)	21, 228, 294, 318, 323, 380, 677
SchI	GAGTC	2 cut(s)	32, 584
ScrFI	CCNGG	6 cut(s)	191, 322, 327, 685, 716, 1571
SduI	GDGCHC	3 cut(s)	1135, 1323, 1444
SfaNI	GCATC	7 cut(s)	613, 742, 951, 1018, 1162, 1519, 1633
SfcI	CTRYAG	1 cut(s)	594
Sfr303I	CCGCGG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	413
SgrBI	CCGCGG	1 cut(s)	9
SinI	GGWCC	4 cut(s)	21, 228, 294, 380
SmlI	CTYRAG	2 cut(s)	650, 1399
SmoI	CTYRAG	2 cut(s)	650, 1399
SspI	AATATT	2 cut(s)	664, 1027
StyD4I	CCNGG	6 cut(s)	189, 320, 325, 683, 714, 1569
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	976, 1257
TaiI	ACGT	4 cut(s)	272, 724, 1374, 1506
TaqI	TCGA	7 cut(s)	266, 332, 413, 800, 1003, 1077, 1225
TauI	GCSGC	7 cut(s)	8, 11, 14, 198, 351, 354, 357
TfiI	GAWTC	6 cut(s)	313, 410, 602, 797, 1112, 1495
Tru1I	TTAA	3 cut(s)	764, 1475, 1678
Tru9I	TTAA	3 cut(s)	764, 1475, 1678
TscAI	CASTG	2 cut(s)	226, 1441
TseFI	GTSAC	2 cut(s)	299, 1214
TseI	GCWGC	3 cut(s)	842, 845, 1175
Tsp45I	GTSAC	2 cut(s)	299, 1214
TspDTI	ATGAA	6 cut(s)	260, 644, 888, 1045, 1379, 1560
TspGWI	ACGGA	4 cut(s)	31, 1331, 1403, 1493
TspRI	CASTG	2 cut(s)	226, 1441
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	4 cut(s)	21, 228, 294, 380
XapI	RAATTY	3 cut(s)	415, 477, 1244
XceI	RCATGY	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1330
XmiI	GTMKAC	1 cut(s)	266
XmnI	GAANNNNTTC	3 cut(s)	939, 1026, 1355
ZraI	GACGTC	1 cut(s)	1372
Zsp2I	ATGCAT	1 cut(s)	1333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.