Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013903

Physical Location & Seq

Genomic Coordinates Reverse (-)

2037255 .. 2042713

Gene Structure 5459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGGCCGCGGCGGCGCTCAGGTCCAAACCCTCCCGCGACTCCGTCTCGCAATTCAGCTACTTCCTCTTGAATTACATGCACACAGGTCGCGTCGTCGCCAATTCTCACTACCGCACCAAAGGCGACGACTTGTTCGTCAACACTCCCTACCACTTCACGGCCTTCAAGCCGGTGTCGTTTTCCGGCAACCTGGGCGGCCAGAGAGACGGCCGGAGTAGCAGTGATAGGACTTTGGGGCAGAAACTGAATAGTAGTAGTGTTATGTCGACGTATGGAGACCCGCCGGAGGTTTGGTCCGGTGACGGGATTGTGATTCGGGCCGGGCCGGGGTCGAATTTGGTGAAGGGCGGCGGCGGTGGCGGTGGTGGTGGTGGTGGTCCTGCCGGTGGTGGGGGTGGAGGGTTTGATTCGAATTCAAAGGATGGGTGTTGGGGTGGGTCTAATCTGGGGAGTAGTTTTCCTACTCCAAAGGAGATTTGTAAAGGGCTTGATAAGTTTGTAATTGGGCAAGAGAGAGCTAAGAAGGTACTGTCTGTTGCTGTTTACAATCATTATAAGAGGATATATCATGAGTCTCAGCAGAAGTGGTCTGCAGGAGATTCAGGTAACAACAAAGCGGATGCTATGAATGATGATAGAGTGGAGCTTGAGAAAAGTAATATTCTTGTAATGGGGCCAACCGGGTCAGGATATGTGGGGGAAGATGTGGAATCGATTTTATACAAACTTCTTTCGGTTGCTGATTACAATGTGGCAGCTGCACAACAAGGAATTGTTTATATTGATGAAGTTGACAAGATTACCAAAAAGGCTGAGAGTCTAAATATCAGCAGAGATGTGTCTGGAGAAGGTGTTCAACAAGCATTACTAAAGATGCTGGAAGGGACAGTTGTAAATGTTCCAGAAAAGGGCGCTCGAAAGCATCCAAGAGGTGAAAATATTCAGATTGACACAAAGGATATTCTTTTCATATGTGGGGGTGCCTTTATCGACTTAGAGAAAACCATCTCAGAAAGACGCCAAGATTCCTCTATTGGGTTTGGTGCTCCAATTAGAGCAAACATGAGAACTGGTGGTGTTACAGATGCTGCGGTTACATCATCCTTATTGGAGATTGTTGAAAGTAGTGACCTTATTCGATATGGTTTGATACCTGAATTTGTTGGGCGGTTTCCTATCCTTGTCAGCTTATCTGCACTAACTGAAGATCAATTAGTTCAGGTCCTAACGGAGCCCAAAAATGCATTGGGGAAGCAATACAAGAAGATGTTCCGAATGAATGACGTCCAACTGCATTTCACGGAAAGTGCCTTGAGGCTAATTGCTAAGAAAGCAATATCAAAGAACACGGGGGCTCGTGGATTACGAGCAATTTTAGAAACTATATTAATGGATGCCATGTATGAGATTCCTGATGTTAGAACTGGTGATGACATAATAGATGCAGTTGTAATTGATGAAGAGGCCGTTGGAACTGATGGCCAGGGTTGTGGAGCTAAAATCCTTTATGGTAAGGGTGCATTGGATCAGTATCTTTCAAAACATAAAGAGAAGGATGTTCAGATTGCAACCACCGAAGGGTCTGATGTAGAGCCTGAAGGGGAAGCCGAGCTTTCTTCTGTTGTTGCTAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

545

Amino Acids

58.29

Weight (kDa)

5.67

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	237 - 393	3e-19	AAA domain (Cdc48 subfamily)
ClpB_D2-small	PF10431	400 - 469	1.4e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53350
fragaria_vesca	FvH4_7g31580
malus_domestica	MD01G1218600.v1.1 MD07G1288500.v1.1
prunus_persica	Prupe.2G310000_v2.0.a1
pyrus_communis	pycom01g22850 pycom07g26110
rosa_chinensis	RchiOBHm_Chr1g0380581
rosa_laevigata	RLG00000026283
rosa_multiflora	Rmu_ssc0000015.1_g000011
rosa_roxburghii	Rroxscaffold_4G00279170
rosa_rugosa	Rorug01G0422700
rosa_samantha	Rh1AG447200 Rh1BG402500 Rh1CG417000 Rh1DG432700
rosa_wichuraiana	Rw1G038900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AasI	GACNNNNNNGTC	1 cut(s)	134
AatII	GACGTC	1 cut(s)	1287
AccB1I	GGYRCC	1 cut(s)	980
AccI	GTMKAC	1 cut(s)	266
AccII	CGCG	3 cut(s)	8, 36, 90
AclWI	GGATC	1 cut(s)	1533
AcoI	YGGCCR	4 cut(s)	3, 196, 208, 1480
AcsI	RAATTY	3 cut(s)	334, 412, 1157
AcuI	CTGAAG	2 cut(s)	1224, 1617
AcyI	GRCGYC	2 cut(s)	1018, 1284
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	9 cut(s)	157, 286, 303, 327, 386, 390, 908, 1035, 1578
AgsI	TTSAA	6 cut(s)	70, 166, 417, 857, 1121, 1539
AjnI	CCWGG	2 cut(s)	189, 1482
AjuI	GAANNNNNNNTTGG	2 cut(s)	1452, 1484
AloI	GAACNNNNNNTCC	2 cut(s)	837, 869
AluBI	AGCT	7 cut(s)	57, 518, 646, 758, 1188, 1496, 1612
AluI	AGCT	7 cut(s)	57, 518, 646, 758, 1188, 1496, 1612
Alw21I	GWGCWC	1 cut(s)	1048
Alw26I	GTCTC	4 cut(s)	49, 198, 270, 579
AlwI	GGATC	1 cut(s)	1533
AlwNI	CAGNNNCTG	2 cut(s)	244, 1088
AoxI	GGCC	9 cut(s)	3, 159, 196, 208, 318, 323, 674, 1464, 1480
ApeKI	GCWGC	3 cut(s)	755, 758, 1088
ApoI	RAATTY	3 cut(s)	334, 412, 1157
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AseI	ATTAAT	1 cut(s)	1388
Asp700I	GAANNNNTTC	3 cut(s)	852, 939, 1268
AspLEI	GCGC	2 cut(s)	16, 914
AspS9I	GGNCC	7 cut(s)	21, 294, 318, 323, 377, 674, 1222
AsuC2I	CCSGG	3 cut(s)	322, 327, 682
AsuHPI	GGTGA	4 cut(s)	311, 352, 944, 1439
AsuII	TTCGAA	1 cut(s)	410
AsuNHI	GCTAGC	1 cut(s)	1628
AvaII	GGWCC	4 cut(s)	21, 294, 377, 1222
BalI	TGGCCA	1 cut(s)	1482
BanI	GGYRCC	1 cut(s)	980
BanII	GRGCYC	2 cut(s)	1236, 1357
BauI	CACGAG	1 cut(s)	1356
Bbv12I	GWGCWC	1 cut(s)	1048
BbvI	GCAGC	3 cut(s)	745, 767, 1075
BccI	CCATC	3 cut(s)	416, 1013, 1472
BceAI	ACGGC	3 cut(s)	174, 223, 1451
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	2 cut(s)	191, 1484
BcnI	CCSGG	3 cut(s)	322, 327, 682
BcoDI	GTCTC	4 cut(s)	49, 198, 270, 579
BfaI	CTAG	1 cut(s)	1629
BfmI	CTRYAG	1 cut(s)	591
BfoI	RGCGCY	2 cut(s)	17, 915
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	9 cut(s)	6, 9, 12, 196, 349, 352, 756, 759, 1089
BlsI	GCNGC	9 cut(s)	7, 10, 13, 197, 350, 353, 757, 760, 1090
Bme1390I	CCNGG	5 cut(s)	191, 322, 327, 682, 1484
Bme18I	GGWCC	4 cut(s)	21, 294, 377, 1222
BmgT120I	GGNCC	7 cut(s)	21, 294, 318, 323, 377, 674, 1222
BmiI	GGNNCC	3 cut(s)	675, 982, 1233
BmrFI	CCNGG	5 cut(s)	191, 322, 327, 682, 1484
BmsI	GCATC	6 cut(s)	610, 864, 931, 1075, 1384, 1432
BmtI	GCTAGC	1 cut(s)	1632
BpmI	CTGGAG	1 cut(s)	864
Bpu10I	CCTNAGC	1 cut(s)	17
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	668, 1333
BpuMI	CCSGG	3 cut(s)	322, 327, 682
Bsa29I	ATCGAT	1 cut(s)	713
BsaBI	GATNNNNATC	1 cut(s)	1530
BsaHI	GRCGYC	2 cut(s)	1018, 1284
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	4 cut(s)	6, 190, 326, 1483
BsaWI	WCCGGW	1 cut(s)	296
BsaXI	ACNNNNNCTCC	6 cut(s)	205, 235, 278, 308, 837, 867
Bsc4I	CCNNNNNNNGG	9 cut(s)	157, 286, 303, 327, 386, 390, 908, 1035, 1578
Bse118I	RCCGGY	2 cut(s)	169, 383
Bse1I	ACTGG	2 cut(s)	1075, 1429
Bse8I	GATNNNNATC	1 cut(s)	1530
BseBI	CCWGG	2 cut(s)	191, 1484
BseCI	ATCGAT	1 cut(s)	713
BseDI	CCNNGG	4 cut(s)	6, 190, 326, 1483
BseGI	GGATG	6 cut(s)	427, 625, 922, 1100, 1399, 1561
BseJI	GATNNNNATC	1 cut(s)	1530
BseLI	CCNNNNNNNGG	9 cut(s)	157, 286, 303, 327, 386, 390, 908, 1035, 1578
BseMII	CTCAG	4 cut(s)	31, 590, 804, 1023
BseNI	ACTGG	2 cut(s)	1075, 1429
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	3 cut(s)	745, 767, 1075
BsgI	GTGCAG	2 cut(s)	744, 1179
Bsh1236I	CGCG	3 cut(s)	8, 36, 90
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	9 cut(s)	5, 161, 198, 210, 320, 325, 676, 1466, 1482
BshNI	GGYRCC	1 cut(s)	980
BshVI	ATCGAT	1 cut(s)	713
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	1048
BsiSI	CCGG	9 cut(s)	170, 183, 211, 284, 297, 321, 326, 384, 681
BslFI	GGGAC	1 cut(s)	898
BslI	CCNNNNNNNGG	9 cut(s)	157, 286, 303, 327, 386, 390, 908, 1035, 1578
BsmAI	GTCTC	4 cut(s)	49, 198, 270, 579
BsmBI	CGTCTC	2 cut(s)	49, 198
BsmFI	GGGAC	1 cut(s)	898
BsnI	GGCC	9 cut(s)	5, 161, 198, 210, 320, 325, 676, 1466, 1482
Bso31I	GGTCTC	1 cut(s)	270
Bsp119I	TTCGAA	1 cut(s)	410
Bsp1286I	GDGCHC	3 cut(s)	1048, 1236, 1357
Bsp143I	GATC	2 cut(s)	1207, 1525
BspANI	GGCC	9 cut(s)	5, 161, 198, 210, 320, 325, 676, 1466, 1482
BspCNI	CTCAG	4 cut(s)	30, 589, 805, 1022
BspDI	ATCGAT	1 cut(s)	713
BspFNI	CGCG	3 cut(s)	8, 36, 90
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	3 cut(s)	675, 982, 1233
BspMAI	CTGCAG	1 cut(s)	595
BspOI	GCTAGC	1 cut(s)	1632
BspPI	GGATC	1 cut(s)	1533
BspT104I	TTCGAA	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	980
BspTNI	GGTCTC	1 cut(s)	270
BsrFI	RCCGGY	2 cut(s)	169, 383
BsrI	ACTGG	2 cut(s)	1075, 1429
BssAI	RCCGGY	2 cut(s)	169, 383
BssECI	CCNNGG	4 cut(s)	6, 190, 326, 1483
BssMI	GATC	2 cut(s)	1207, 1525
BssNI	GRCGYC	2 cut(s)	1018, 1284
BssSI	CACGAG	1 cut(s)	1356
Bst2BI	CACGAG	1 cut(s)	1356
Bst2UI	CCWGG	2 cut(s)	191, 1484
Bst4CI	ACNGT	2 cut(s)	531, 889
Bst6I	CTCTTC	1 cut(s)	1455
BstACI	GRCGYC	2 cut(s)	1018, 1284
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	1630
BstDEI	CTNAG	7 cut(s)	17, 519, 576, 813, 994, 1009, 1326
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	6 cut(s)	427, 625, 922, 1100, 1399, 1561
BstFNI	CGCG	3 cut(s)	8, 36, 90
BstH2I	RGCGCY	2 cut(s)	17, 915
BstHHI	GCGC	2 cut(s)	16, 914
BstKTI	GATC	2 cut(s)	1210, 1528
BstMAI	GTCTC	4 cut(s)	49, 198, 270, 579
BstMBI	GATC	2 cut(s)	1207, 1525
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 120, 192, 216, 357, 1331
BstNI	CCWGG	2 cut(s)	191, 1484
BstNSI	RCATGY	2 cut(s)	79, 1636
BstSCI	CCNGG	5 cut(s)	189, 320, 325, 680, 1482
BstSFI	CTRYAG	1 cut(s)	591
BstUI	CGCG	3 cut(s)	8, 36, 90
BstV1I	GCAGC	3 cut(s)	745, 767, 1075
BstXI	CCANNNNNNTGG	1 cut(s)	1490
BstZI	CGGCCG	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	713
BsuRI	GGCC	9 cut(s)	5, 161, 198, 210, 320, 325, 676, 1466, 1482
BsuTUI	ATCGAT	1 cut(s)	713
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	6 cut(s)	427, 625, 922, 1100, 1399, 1561
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	1630
CaiI	CAGNNNCTG	2 cut(s)	244, 1088
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	2 cut(s)	16, 914
Cfr10I	RCCGGY	2 cut(s)	169, 383
Cfr13I	GGNCC	7 cut(s)	21, 294, 318, 323, 377, 674, 1222
Cfr42I	CCGCGG	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	713
CseI	GACGC	2 cut(s)	79, 1026
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	5 cut(s)	76, 569, 1063, 1399, 1633
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	7 cut(s)	17, 519, 576, 813, 994, 1009, 1326
DpnI	GATC	2 cut(s)	1209, 1527
DpnII	GATC	2 cut(s)	1207, 1525
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	4 cut(s)	3, 196, 208, 1480
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	1455
EarI	CTCTTC	1 cut(s)	1455
EclXI	CGGCCG	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	1236, 1357
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	4 cut(s)	21, 294, 377, 1222
Eco52I	CGGCCG	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	1224, 1617
EcoO109I	RGGNCCY	1 cut(s)	1222
EcoRI	GAATTC	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	189, 1482
EcoT22I	ATGCAT	1 cut(s)	1246
EcoT38I	GRGCYC	2 cut(s)	1236, 1357
Esp3I	CGTCTC	2 cut(s)	49, 198
FaeI	CATG	5 cut(s)	79, 572, 1066, 1402, 1636
FalI	AAGNNNNNCTT	2 cut(s)	1596, 1628
FaqI	GGGAC	1 cut(s)	898
FatI	CATG	5 cut(s)	75, 568, 1062, 1398, 1632
FauI	CCCGC	2 cut(s)	41, 288
FauNDI	CATATG	1 cut(s)	971
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	9 cut(s)	6, 9, 12, 196, 349, 352, 756, 759, 1089
FokI	GGATG	6 cut(s)	434, 632, 909, 1087, 1406, 1568
FriOI	GRGCYC	2 cut(s)	1236, 1357
Fsp4HI	GCNGC	9 cut(s)	6, 9, 12, 196, 349, 352, 756, 759, 1089
FspBI	CTAG	1 cut(s)	1629
GlaI	GCGC	2 cut(s)	15, 913
GluI	GCNGC	9 cut(s)	6, 9, 12, 196, 349, 352, 756, 759, 1089
GsuI	CTGGAG	1 cut(s)	864
HaeII	RGCGCY	2 cut(s)	17, 915
HaeIII	GGCC	9 cut(s)	5, 161, 198, 210, 320, 325, 676, 1466, 1482
HapII	CCGG	9 cut(s)	170, 183, 211, 284, 297, 321, 326, 384, 681
HgaI	GACGC	2 cut(s)	79, 1026
HhaI	GCGC	2 cut(s)	16, 914
Hin1I	GRCGYC	2 cut(s)	1018, 1284
Hin1II	CATG	5 cut(s)	79, 572, 1066, 1402, 1636
Hin6I	GCGC	2 cut(s)	14, 912
HinP1I	GCGC	2 cut(s)	14, 912
HincII	GTYRAC	3 cut(s)	139, 267, 793
HindII	GTYRAC	3 cut(s)	139, 267, 793
HinfI	GANTC	9 cut(s)	38, 313, 407, 572, 599, 710, 817, 1025, 1408
HpaII	CCGG	9 cut(s)	170, 183, 211, 284, 297, 321, 326, 384, 681
HphI	GGTGA	4 cut(s)	311, 352, 944, 1439
Hpy166II	GTNNAC	4 cut(s)	139, 267, 544, 793
Hpy188I	TCNGA	5 cut(s)	945, 1012, 1274, 1563, 1585
Hpy188III	TCNNGA	6 cut(s)	67, 569, 687, 843, 902, 1412
Hpy8I	GTNNAC	4 cut(s)	139, 267, 544, 793
Hpy99I	CGWCG	4 cut(s)	95, 98, 128, 271
HpyAV	CCTTC	8 cut(s)	172, 337, 517, 842, 875, 1546, 1571, 1592
HpyCH4III	ACNGT	2 cut(s)	531, 889
HpyCH4IV	ACGT	2 cut(s)	269, 1284
HpyCH4V	TGCA	9 cut(s)	79, 593, 761, 1196, 1244, 1294, 1445, 1520, 1568
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 120, 192, 216, 357, 1331
HpyF3I	CTNAG	7 cut(s)	17, 519, 576, 813, 994, 1009, 1326
HpySE526I	ACGT	2 cut(s)	269, 1284
Hsp92I	GRCGYC	2 cut(s)	1018, 1284
Hsp92II	CATG	5 cut(s)	79, 572, 1066, 1402, 1636
HspAI	GCGC	2 cut(s)	14, 912
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	1207, 1525
LmnI	GCTCC	4 cut(s)	643, 1051, 1231, 1493
Lsp1109I	GCAGC	3 cut(s)	745, 767, 1075
LweI	GCATC	6 cut(s)	610, 864, 931, 1075, 1384, 1432
MaeI	CTAG	1 cut(s)	1629
MaeII	ACGT	2 cut(s)	269, 1284
MaeIII	GTNAC	5 cut(s)	299, 605, 1078, 1093, 1127
MalI	GATC	2 cut(s)	1209, 1527
MboI	GATC	2 cut(s)	1207, 1525
MboII	GAAGA	5 cut(s)	713, 1217, 1276, 1472, 1608
MhlI	GDGCHC	3 cut(s)	1048, 1236, 1357
MlsI	TGGCCA	1 cut(s)	1482
MluNI	TGGCCA	1 cut(s)	1482
MlyI	GAGTC	3 cut(s)	32, 581, 826
MmeI	TCCRAC	2 cut(s)	1312, 1450
MnlI	CCTC	9 cut(s)	40, 74, 280, 392, 552, 923, 1039, 1308, 1456
Mox20I	TGGCCA	1 cut(s)	1482
Mph1103I	ATGCAT	1 cut(s)	1246
MroXI	GAANNNNTTC	3 cut(s)	852, 939, 1268
MscI	TGGCCA	1 cut(s)	1482
MseI	TTAA	1 cut(s)	1388
Msp20I	TGGCCA	1 cut(s)	1482
MspA1I	CMGCKG	2 cut(s)	8, 758
MspI	CCGG	9 cut(s)	170, 183, 211, 284, 297, 321, 326, 384, 681
MspR9I	CCNGG	5 cut(s)	191, 322, 327, 682, 1484
MvaI	CCWGG	2 cut(s)	191, 1484
MvnI	CGCG	3 cut(s)	8, 36, 90
MwoI	GCNNNNNNNGC	6 cut(s)	11, 120, 192, 216, 357, 1331
NciI	CCSGG	3 cut(s)	322, 327, 682
NdeI	CATATG	1 cut(s)	971
NdeII	GATC	2 cut(s)	1207, 1525
NheI	GCTAGC	1 cut(s)	1628
NlaIII	CATG	5 cut(s)	79, 572, 1066, 1402, 1636
NlaIV	GGNNCC	3 cut(s)	675, 982, 1233
NmeAIII	GCCGAG	1 cut(s)	1633
NmuCI	GTSAC	2 cut(s)	299, 1127
NsiI	ATGCAT	1 cut(s)	1246
NspI	RCATGY	2 cut(s)	79, 1636
NspV	TTCGAA	1 cut(s)	410
PagI	TCATGA	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 1363
PdmI	GAANNNNTTC	3 cut(s)	852, 939, 1268
PfeI	GAWTC	6 cut(s)	313, 407, 599, 710, 1025, 1408
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	9 cut(s)	7, 10, 13, 197, 350, 353, 757, 760, 1090
PleI	GAGTC	3 cut(s)	32, 580, 825
PpsI	GAGTC	3 cut(s)	32, 580, 825
PpuMI	RGGWCCY	1 cut(s)	1222
PshBI	ATTAAT	1 cut(s)	1388
PsiI	TTATAA	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	1222
Psp6I	CCWGG	2 cut(s)	189, 1482
PspGI	CCWGG	2 cut(s)	189, 1482
PspN4I	GGNNCC	3 cut(s)	675, 982, 1233
PspPI	GGNCC	7 cut(s)	21, 294, 318, 323, 377, 674, 1222
PspPPI	RGGWCCY	1 cut(s)	1222
PstI	CTGCAG	1 cut(s)	595
PstNI	CAGNNNCTG	2 cut(s)	244, 1088
PsyI	GACNNNGTC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SacII	CCGCGG	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	1388
SatI	GCNGC	9 cut(s)	6, 9, 12, 196, 349, 352, 756, 759, 1089
Sau3AI	GATC	2 cut(s)	1207, 1525
Sau96I	GGNCC	7 cut(s)	21, 294, 318, 323, 377, 674, 1222
SchI	GAGTC	3 cut(s)	32, 581, 826
ScrFI	CCNGG	5 cut(s)	191, 322, 327, 682, 1484
SduI	GDGCHC	3 cut(s)	1048, 1236, 1357
SfaNI	GCATC	6 cut(s)	610, 864, 931, 1075, 1384, 1432
SfcI	CTRYAG	1 cut(s)	591
Sfr303I	CCGCGG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	410
SgrBI	CCGCGG	1 cut(s)	9
SinI	GGWCC	4 cut(s)	21, 294, 377, 1222
SmlI	CTYRAG	2 cut(s)	647, 1312
SmoI	CTYRAG	2 cut(s)	647, 1312
SspI	AATATT	2 cut(s)	661, 940
SspMI	CTAG	1 cut(s)	1629
StyD4I	CCNGG	5 cut(s)	189, 320, 325, 680, 1482
TaaI	ACNGT	2 cut(s)	531, 889
TaiI	ACGT	2 cut(s)	272, 1287
TaqI	TCGA	7 cut(s)	266, 332, 410, 713, 916, 990, 1138
TauI	GCSGC	6 cut(s)	8, 11, 14, 198, 351, 354
TfiI	GAWTC	6 cut(s)	313, 407, 599, 710, 1025, 1408
Tru1I	TTAA	1 cut(s)	1388
Tru9I	TTAA	1 cut(s)	1388
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	2 cut(s)	299, 1127
TseI	GCWGC	3 cut(s)	755, 758, 1088
Tsp45I	GTSAC	2 cut(s)	299, 1127
TspDTI	ATGAA	5 cut(s)	641, 801, 958, 1292, 1473
TspGWI	ACGGA	3 cut(s)	31, 1244, 1316
TspRI	CASTG	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	4 cut(s)	21, 294, 377, 1222
VspI	ATTAAT	1 cut(s)	1388
XapI	RAATTY	3 cut(s)	334, 412, 1157
XceI	RCATGY	2 cut(s)	79, 1636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1243
XmiI	GTMKAC	1 cut(s)	266
XmnI	GAANNNNTTC	3 cut(s)	852, 939, 1268
XspI	CTAG	1 cut(s)	1629
ZraI	GACGTC	1 cut(s)	1285
Zsp2I	ATGCAT	1 cut(s)	1246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.