Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018082

Physical Location & Seq

Genomic Coordinates Reverse (-)

5258163 .. 5258988

Gene Structure 826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026714

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGATCCAACGGAGAAGAAAATGATCATGGACGATTTGGATATGTTTGCGCGGAGCAAAGAGCACTATAAGTATGTCGGCAGGGCTTGGAAAAGAGGTTACTTGTTATATGGTCCGCCTGGCACTGGCAAATCCAGCTTGATTGCAGCCATGGCAAATTACCTCAACTACAATATATATGATTTGGAGCTTACAAGCATCTCCAACAATTCTGATTTGAGGCATTCTTTGCTGTCCACCACCAATCGCTCTATTTTGATAATTGAGGACATTGATTGCTCCTTGGATGTACAGAACCGGGAAAAAGAGGAGGAATCAGATGAGCAAGTGCTTTTCCTTACTAAGGACAAGAACGAACTAAAGCAACAGACTGTGACACTGTCGGGGCTACTGAACTTCATTGATGGCCTGTGGTCAAGCTGTGGTGATGAGAGAATCATTGTGTTCACCACCAACTACAAGGATAAACTAGACCCTGCATTGTACCTTGGCATTCATGATCATCCTCTCTTTGCAGAAATTGAATGGTTGATGCAGACCACAGAGTTCACCCCGGAACAGGTTGCTGGGCAGCTACAGGTGAGTTATGATGCTGATGTTGCTCTTGCAGCGCTGGTGAAATTCATCAATGAAAAGATGGAGGAGGATGAGAAGAAGGAGAAGGAAAAAAAGAAAGAAGACGCACAAGCAAAGAAACTAAAGAGAAAAAGGTTGCCGGCTCTTTTTCAGAAGATCAAGGAAATTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

250

Amino Acids

28.74

Weight (kDa)

5.22

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	34 - 162	3.8e-15	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	161 - 224	5e-13	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018082)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27860
rosa_chinensis	RchiOBHm_Chr1g0374801
rosa_laevigata	RLG00000026714 RLG00000026717
rosa_multiflora	Rmu_co8506051.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283270
rosa_rugosa	Rorug01G0384900
rosa_samantha	Rh1AG396400 Rh1BG360500 Rh1CG373900
rosa_wichuraiana	Rw1G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	52
AciI	CCGC	2 cut(s)	52, 116
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	620
AfaI	GTAC	2 cut(s)	291, 485
AfeI	AGCGCT	1 cut(s)	612
AfiI	CCNNNNNNNGG	3 cut(s)	125, 343, 559
AgsI	TTSAA	1 cut(s)	524
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	4 cut(s)	138, 190, 420, 574
AluI	AGCT	4 cut(s)	138, 190, 420, 574
Alw21I	GWGCWC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	612
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	3 cut(s)	146, 571, 608
ApoI	RAATTY	1 cut(s)	620
AspLEI	GCGC	2 cut(s)	52, 613
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	2 cut(s)	299, 554
AsuHPI	GGTGA	5 cut(s)	437, 439, 541, 592, 628
AvaII	GGWCC	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	3 cut(s)	158, 583, 620
BccI	CCATC	2 cut(s)	398, 631
BciT130I	CCWGG	1 cut(s)	120
BclI	TGATCA	2 cut(s)	24, 499
BcnI	CCSGG	2 cut(s)	299, 554
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	1 cut(s)	575
BfoI	RGCGCY	1 cut(s)	614
BisI	GCNGC	3 cut(s)	147, 572, 609
BlsI	GCNGC	3 cut(s)	148, 573, 610
Bme1390I	CCNGG	3 cut(s)	120, 299, 554
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	120, 299, 554
BmsI	GCATC	3 cut(s)	207, 522, 580
BpiI	GAAGAC	1 cut(s)	684
BpuMI	CCSGG	2 cut(s)	299, 554
BsaJI	CCNNGG	4 cut(s)	150, 282, 487, 552
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 343, 559
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	4 cut(s)	150, 282, 487, 552
BseGI	GGATG	3 cut(s)	292, 502, 652
BseLI	CCNNNNNNNGG	3 cut(s)	125, 343, 559
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	2 cut(s)	323, 656
BseXI	GCAGC	3 cut(s)	158, 583, 620
BseYI	CCCAGC	1 cut(s)	566
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	3 cut(s)	298, 554, 716
BslI	CCNNNNNNNGG	3 cut(s)	125, 343, 559
BsmI	GAATGC	2 cut(s)	223, 492
BsnI	GGCC	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	4 cut(s)	4, 24, 499, 732
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	2 cut(s)	52, 116
BspANI	GGCC	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	715
BsrGI	TGTACA	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	4 cut(s)	150, 282, 487, 552
BssMI	GATC	4 cut(s)	4, 24, 499, 732
BssT1I	CCWWGG	3 cut(s)	150, 282, 487
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	373, 381
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstAUI	TGTACA	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	717
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	150
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	3 cut(s)	292, 502, 652
BstFNI	CGCG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	614
BstHHI	GCGC	2 cut(s)	52, 613
BstKTI	GATC	4 cut(s)	7, 27, 502, 735
BstMBI	GATC	4 cut(s)	4, 24, 499, 732
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 152, 229, 599, 608
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	3 cut(s)	118, 297, 552
BstSFI	CTRYAG	1 cut(s)	575
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	158, 583, 620
BstV2I	GAAGAC	1 cut(s)	684
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	3 cut(s)	292, 502, 652
BtsIMutI	CAGTG	2 cut(s)	123, 377
Cac8I	GCNNGC	1 cut(s)	717
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	2 cut(s)	52, 613
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	1 cut(s)	113
CseI	GACGC	1 cut(s)	689
Csp6I	GTAC	2 cut(s)	290, 484
CviAII	CATG	3 cut(s)	28, 151, 497
CviJI	RGCY	9 cut(s)	86, 138, 149, 190, 388, 408, 420, 574, 719
CviKI_1	RGCY	9 cut(s)	86, 138, 149, 190, 388, 408, 420, 574, 719
CviQI	GTAC	2 cut(s)	290, 484
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	4 cut(s)	6, 26, 501, 734
DpnII	GATC	4 cut(s)	4, 24, 499, 732
EciI	GGCGGA	1 cut(s)	105
Eco130I	CCWWGG	3 cut(s)	150, 282, 487
Eco47I	GGWCC	1 cut(s)	113
Eco47III	AGCGCT	1 cut(s)	612
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	3 cut(s)	150, 282, 487
ErhI	CCWWGG	3 cut(s)	150, 282, 487
FaeI	CATG	3 cut(s)	31, 154, 500
FatI	CATG	3 cut(s)	27, 150, 496
FbaI	TGATCA	2 cut(s)	24, 499
Fnu4HI	GCNGC	3 cut(s)	147, 572, 609
FokI	GGATG	3 cut(s)	299, 489, 659
Fsp4HI	GCNGC	3 cut(s)	147, 572, 609
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	2 cut(s)	51, 612
GluI	GCNGC	3 cut(s)	147, 572, 609
GsaI	CCCAGC	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	614
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	3 cut(s)	298, 554, 716
HgaI	GACGC	1 cut(s)	689
HhaI	GCGC	2 cut(s)	52, 613
Hin1II	CATG	3 cut(s)	31, 154, 500
Hin6I	GCGC	2 cut(s)	50, 611
HinP1I	GCGC	2 cut(s)	50, 611
HinfI	GANTC	2 cut(s)	314, 435
HpaII	CCGG	3 cut(s)	298, 554, 716
HphI	GGTGA	5 cut(s)	437, 439, 541, 592, 628
Hpy166II	GTNNAC	3 cut(s)	237, 447, 549
Hpy188I	TCNGA	3 cut(s)	214, 319, 729
Hpy188III	TCNNGA	1 cut(s)	497
Hpy8I	GTNNAC	3 cut(s)	237, 447, 549
HpyAV	CCTTC	2 cut(s)	649, 655
HpyCH4III	ACNGT	2 cut(s)	373, 381
HpyCH4V	TGCA	5 cut(s)	146, 479, 515, 535, 608
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 152, 229, 599, 608
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	3 cut(s)	31, 154, 500
HspAI	GCGC	2 cut(s)	50, 611
KroI	GCCGGC	1 cut(s)	715
KroNI	GCCGGC	1 cut(s)	717
Ksp22I	TGATCA	2 cut(s)	24, 499
Kzo9I	GATC	4 cut(s)	4, 24, 499, 732
LmnI	GCTCC	3 cut(s)	54, 187, 284
Lsp1109I	GCAGC	3 cut(s)	158, 583, 620
LweI	GCATC	3 cut(s)	207, 522, 580
MaeI	CTAG	1 cut(s)	470
MaeIII	GTNAC	2 cut(s)	98, 373
MalI	GATC	4 cut(s)	6, 26, 501, 734
MboI	GATC	4 cut(s)	4, 24, 499, 732
MboII	GAAGA	4 cut(s)	28, 664, 689, 742
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	6 cut(s)	157, 208, 261, 519, 620, 741
MmeI	TCCRAC	2 cut(s)	32, 228
MnlI	CCTC	9 cut(s)	89, 173, 213, 259, 301, 304, 516, 634, 637
MroNI	GCCGGC	1 cut(s)	715
MspI	CCGG	3 cut(s)	298, 554, 716
MspR9I	CCNGG	3 cut(s)	120, 299, 554
Mva1269I	GAATGC	2 cut(s)	223, 492
MvaI	CCWGG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	5 cut(s)	135, 152, 229, 599, 608
NaeI	GCCGGC	1 cut(s)	717
NciI	CCSGG	2 cut(s)	299, 554
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	4 cut(s)	4, 24, 499, 732
NgoMIV	GCCGGC	1 cut(s)	715
NlaIII	CATG	3 cut(s)	31, 154, 500
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	373
PagI	TCATGA	1 cut(s)	496
PctI	GAATGC	2 cut(s)	223, 492
PdiI	GCCGGC	1 cut(s)	717
PfeI	GAWTC	2 cut(s)	314, 435
PflFI	GACNNNGTC	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	148, 573, 610
Psp6I	CCWGG	1 cut(s)	118
PspFI	CCCAGC	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	379
RsaI	GTAC	2 cut(s)	291, 485
RsaNI	GTAC	2 cut(s)	290, 484
SatI	GCNGC	3 cut(s)	147, 572, 609
Sau3AI	GATC	4 cut(s)	4, 24, 499, 732
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	3 cut(s)	120, 299, 554
SduI	GDGCHC	1 cut(s)	66
SfaNI	GCATC	3 cut(s)	207, 522, 580
SfcI	CTRYAG	1 cut(s)	575
SinI	GGWCC	1 cut(s)	113
Sse9I	AATT	6 cut(s)	157, 208, 261, 519, 620, 741
SsiI	CCGC	2 cut(s)	52, 116
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	3 cut(s)	118, 297, 552
StyI	CCWWGG	3 cut(s)	150, 282, 487
TaaI	ACNGT	2 cut(s)	373, 381
TasI	AATT	6 cut(s)	157, 208, 261, 519, 620, 741
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	314, 435
TscAI	CASTG	2 cut(s)	130, 384
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	3 cut(s)	146, 571, 608
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	4 cut(s)	388, 485, 613, 645
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	130, 384
Tth111I	GACNNNGTC	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	113
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	620
XspI	CTAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.