Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018082

Physical Location & Seq

Genomic Coordinates Reverse (-)

5225809 .. 5227822

Gene Structure 2014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTTAGGCCATTCCATGGTGGAGCAAGTCTTCAACAACTCATACCTCCAGGCCTACCTCCAGGCTCTCTGGGCTTGGTTCTGGTCTGATCTGACTTTCGTTGTCCCGGAGTACACCGAAGTAGGAGAACGTAATCAGATATACGACTCCGTGGAGCCCTACCTCCGAGCAAAAATAGGCACCAATACGAAACGTGTCAGAGTCAGCAAAACCACTAGGCAAAAGACCACCAGCTTGACCCTTGACGACTATCAAGAAGTCAGAGACACATTCGAAAACTTCAGTATTAAGTGGCGTTATGTGTGCATTGAACCAAAGGATCATCACTTTGAAGAAAAACGTTACTATGAACTGAATTTCCACAAGAAGCACAGAGCCAAAATGAGCTCCTACTTGGACTATGTCGTTGCTCAAGCTAAAGAGATCAAAAATGCAGAAAAGGTTCTCAGGATTTATTCTCGTTGCACTTCAGCAAAGAGCACTATAAGCATGTCAGCAGGGCTTGGAAAAGAGGTTACTTGTTATATGGTCCGCCTGAACCGGGAAAAAGAGGAGGAATCAGATGAGCAAGTGCTTGTCCCTACTAAGGACAAGAACGAACTAAAGCAACAGACTGTGACACTGTCGGGGCTACTGAACTTCATTGATGGCCTGTGGTCAAGTTGTGGTGATGAGAGAATCATTGTGTTCACCACCAACTACAAGGATAAACTAGACCCTGCATTGTTGCGGCCAGGACGAATGGATGTGCATATACACGTCATATTGCACTGGTTGATGCAGACCACAGAGGTCACCCCGGCACAGGTTGCTGGGCAGCTACAGGTGAGTTATGATGCTGATGTTGCTCTTGCAGCGCTGGTGAAATTCATCAAGGAAAAGAAGGAGGAGGATGAGAAGAAGGAGAAGGAAAAAAAGAAGGAAGAAGCACAAGCAAAGAAACTAATGAGAAAAAAGTTGCTGGCTCTTTTTCAGAAGATCAAGGAAATTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

331

Amino Acids

38.76

Weight (kDa)

8.84

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	14 - 102	3.2e-18	Domain associated at C-terminal with AAA
AAA	PF00004	194 - 254	7.4e-07	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	259 - 303	4.8e-07	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018082)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27860
rosa_chinensis	RchiOBHm_Chr1g0374801
rosa_laevigata	RLG00000026714 RLG00000026717
rosa_multiflora	Rmu_co8506051.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283270
rosa_rugosa	Rorug01G0384900
rosa_samantha	Rh1AG396400 Rh1BG360500 Rh1CG373900
rosa_wichuraiana	Rw1G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	16
AciI	CCGC	2 cut(s)	532, 730
AclI	AACGTT	1 cut(s)	340
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	1 cut(s)	731
AcsI	RAATTY	2 cut(s)	355, 866
AcuI	CTGAAG	2 cut(s)	265, 453
AfaI	GTAC	1 cut(s)	113
AfeI	AGCGCT	1 cut(s)	858
AfiI	CCNNNNNNNGG	4 cut(s)	16, 541, 586, 805
AflIII	ACRYGT	2 cut(s)	193, 757
AgsI	TTSAA	3 cut(s)	34, 311, 332
AjiI	CACGTC	1 cut(s)	760
AjnI	CCWGG	3 cut(s)	48, 60, 733
AloI	GAACNNNNNNTCC	2 cut(s)	342, 374
AluBI	AGCT	4 cut(s)	234, 387, 416, 820
AluI	AGCT	4 cut(s)	234, 387, 416, 820
Alw21I	GWGCWC	2 cut(s)	389, 482
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	327
Aor51HI	AGCGCT	1 cut(s)	858
AoxI	GGCC	4 cut(s)	7, 51, 649, 731
ApeKI	GCWGC	2 cut(s)	817, 854
ApoI	RAATTY	2 cut(s)	355, 866
Asp700I	GAANNNNTTC	1 cut(s)	441
AspLEI	GCGC	1 cut(s)	859
AspS9I	GGNCC	1 cut(s)	529
AsuC2I	CCSGG	3 cut(s)	107, 542, 800
AsuHPI	GGTGA	5 cut(s)	680, 682, 787, 838, 874
AsuII	TTCGAA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	2 cut(s)	159, 389
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	2 cut(s)	389, 482
BbvI	GCAGC	2 cut(s)	829, 866
BccI	CCATC	1 cut(s)	641
BciT130I	CCWGG	3 cut(s)	50, 62, 735
BcnI	CCSGG	3 cut(s)	107, 542, 800
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	2 cut(s)	216, 713
BfmI	CTRYAG	1 cut(s)	821
BfoI	RGCGCY	1 cut(s)	860
BisI	GCNGC	3 cut(s)	731, 818, 855
BlsI	GCNGC	3 cut(s)	732, 819, 856
Bme1390I	CCNGG	6 cut(s)	50, 62, 107, 542, 735, 800
Bme18I	GGWCC	1 cut(s)	529
BmgBI	CACGTC	1 cut(s)	760
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	2 cut(s)	156, 181
BmrFI	CCNGG	6 cut(s)	50, 62, 107, 542, 735, 800
BmsI	GCATC	2 cut(s)	768, 826
BpiI	GAAGAC	1 cut(s)	22
BpmI	CTGGAG	2 cut(s)	32, 44
Bpu14I	TTCGAA	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	396
BpuMI	CCSGG	3 cut(s)	107, 542, 800
BsaJI	CCNNGG	3 cut(s)	15, 150, 798
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 541, 586, 805
Bse1I	ACTGG	1 cut(s)	776
BseBI	CCWGG	3 cut(s)	50, 62, 735
BseDI	CCNNGG	3 cut(s)	15, 150, 798
BseGI	GGATG	2 cut(s)	751, 898
BseLI	CCNNNNNNNGG	4 cut(s)	16, 541, 586, 805
BseMII	CTCAG	1 cut(s)	460
BseNI	ACTGG	1 cut(s)	776
BseRI	GAGGAG	2 cut(s)	566, 902
BseXI	GCAGC	2 cut(s)	829, 866
BseYI	CCCAGC	1 cut(s)	812
BshFI	GGCC	4 cut(s)	9, 53, 651, 733
BshNI	GGYRCC	1 cut(s)	179
BsiHKAI	GWGCWC	2 cut(s)	389, 482
BsiSI	CCGG	3 cut(s)	107, 541, 800
BslFI	GGGAC	2 cut(s)	89, 563
BslI	CCNNNNNNNGG	4 cut(s)	16, 541, 586, 805
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	2 cut(s)	89, 563
BsnI	GGCC	4 cut(s)	9, 53, 651, 733
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	3 cut(s)	159, 389, 482
Bsp143I	GATC	4 cut(s)	88, 319, 423, 978
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	2 cut(s)	532, 730
BspANI	GGCC	4 cut(s)	9, 53, 651, 733
BspCNI	CTCAG	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	156, 181
BspPI	GGATC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	776
BssECI	CCNNGG	3 cut(s)	15, 150, 798
BssMI	GATC	4 cut(s)	88, 319, 423, 978
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	3 cut(s)	50, 62, 735
Bst4CI	ACNGT	2 cut(s)	616, 624
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	963
BstDEI	CTNAG	2 cut(s)	446, 585
BstDSI	CCRYGG	2 cut(s)	15, 150
BstEII	GGTNACC	1 cut(s)	793
BstF5I	GGATG	2 cut(s)	751, 898
BstH2I	RGCGCY	1 cut(s)	860
BstHHI	GCGC	1 cut(s)	859
BstKTI	GATC	4 cut(s)	91, 322, 426, 981
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	4 cut(s)	88, 319, 423, 978
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 486, 809, 845, 854
BstNI	CCWGG	3 cut(s)	50, 62, 735
BstNSI	RCATGY	1 cut(s)	493
BstPI	GGTNACC	1 cut(s)	793
BstSCI	CCNGG	6 cut(s)	48, 60, 105, 540, 733, 798
BstSFI	CTRYAG	1 cut(s)	821
BstV1I	GCAGC	2 cut(s)	829, 866
BstV2I	GAAGAC	1 cut(s)	22
BsuRI	GGCC	4 cut(s)	9, 53, 651, 733
BtgI	CCRYGG	2 cut(s)	15, 150
BtrI	CACGTC	1 cut(s)	760
BtsCI	GGATG	2 cut(s)	751, 898
BtsIMutI	CAGTG	2 cut(s)	620, 769
Cac8I	GCNNGC	1 cut(s)	963
CfoI	GCGC	1 cut(s)	859
Cfr13I	GGNCC	1 cut(s)	529
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	2 cut(s)	16, 490
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	2 cut(s)	446, 585
DpnI	GATC	4 cut(s)	90, 321, 425, 980
DpnII	GATC	4 cut(s)	88, 319, 423, 978
EaeI	YGGCCR	1 cut(s)	731
EciI	GGCGGA	1 cut(s)	521
Ecl136II	GAGCTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	2 cut(s)	159, 389
Eco47I	GGWCC	1 cut(s)	529
Eco47III	AGCGCT	1 cut(s)	858
Eco53kI	GAGCTC	1 cut(s)	387
Eco57I	CTGAAG	2 cut(s)	265, 453
Eco91I	GGTNACC	1 cut(s)	793
EcoICRI	GAGCTC	1 cut(s)	387
EcoO65I	GGTNACC	1 cut(s)	793
EcoRII	CCWGG	3 cut(s)	48, 60, 733
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	2 cut(s)	159, 389
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	19, 493
FaqI	GGGAC	2 cut(s)	89, 563
FatI	CATG	2 cut(s)	15, 489
Fnu4HI	GCNGC	3 cut(s)	731, 818, 855
FokI	GGATG	2 cut(s)	758, 905
FriOI	GRGCYC	2 cut(s)	159, 389
Fsp4HI	GCNGC	3 cut(s)	731, 818, 855
FspBI	CTAG	2 cut(s)	216, 713
GlaI	GCGC	1 cut(s)	858
GluI	GCNGC	3 cut(s)	731, 818, 855
GsaI	CCCAGC	1 cut(s)	816
GsuI	CTGGAG	2 cut(s)	32, 44
HaeII	RGCGCY	1 cut(s)	860
HaeIII	GGCC	4 cut(s)	9, 53, 651, 733
HapII	CCGG	3 cut(s)	107, 541, 800
HhaI	GCGC	1 cut(s)	859
Hin1II	CATG	2 cut(s)	19, 493
Hin6I	GCGC	1 cut(s)	857
HinP1I	GCGC	1 cut(s)	857
HinfI	GANTC	4 cut(s)	146, 201, 557, 678
HpaII	CCGG	3 cut(s)	107, 541, 800
HphI	GGTGA	5 cut(s)	680, 682, 787, 838, 874
Hpy166II	GTNNAC	2 cut(s)	114, 690
Hpy188I	TCNGA	8 cut(s)	88, 93, 138, 167, 200, 263, 562, 975
Hpy188III	TCNNGA	2 cut(s)	254, 448
Hpy8I	GTNNAC	2 cut(s)	114, 690
HpyAV	CCTTC	4 cut(s)	877, 895, 901, 913
HpyCH4III	ACNGT	2 cut(s)	616, 624
HpyCH4IV	ACGT	4 cut(s)	130, 193, 340, 759
HpyCH4V	TGCA	8 cut(s)	306, 434, 465, 722, 751, 769, 781, 854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 486, 809, 845, 854
HpyF3I	CTNAG	2 cut(s)	446, 585
HpySE526I	ACGT	4 cut(s)	130, 193, 340, 759
Hsp92II	CATG	2 cut(s)	19, 493
HspAI	GCGC	1 cut(s)	857
Kzo9I	GATC	4 cut(s)	88, 319, 423, 978
LmnI	GCTCC	3 cut(s)	22, 154, 392
Lsp1109I	GCAGC	2 cut(s)	829, 866
LweI	GCATC	2 cut(s)	768, 826
MaeI	CTAG	2 cut(s)	216, 713
MaeII	ACGT	4 cut(s)	130, 193, 340, 759
MaeIII	GTNAC	4 cut(s)	341, 514, 616, 793
MalI	GATC	4 cut(s)	90, 321, 425, 980
MboI	GATC	4 cut(s)	88, 319, 423, 978
MboII	GAAGA	5 cut(s)	22, 344, 910, 935, 988
MhlI	GDGCHC	3 cut(s)	159, 389, 482
MluCI	AATT	3 cut(s)	355, 866, 987
MlyI	GAGTC	2 cut(s)	140, 210
MnlI	CCTC	9 cut(s)	56, 68, 173, 505, 544, 547, 784, 880, 883
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	1 cut(s)	288
MspI	CCGG	3 cut(s)	107, 541, 800
MspR9I	CCNGG	6 cut(s)	50, 62, 107, 542, 735, 800
MvaI	CCWGG	3 cut(s)	50, 62, 735
MwoI	GCNNNNNNNGC	5 cut(s)	71, 486, 809, 845, 854
NciI	CCSGG	3 cut(s)	107, 542, 800
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	4 cut(s)	88, 319, 423, 978
NlaIII	CATG	2 cut(s)	19, 493
NlaIV	GGNNCC	2 cut(s)	156, 181
NmuCI	GTSAC	2 cut(s)	616, 793
NspI	RCATGY	1 cut(s)	493
NspV	TTCGAA	1 cut(s)	273
PceI	AGGCCT	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	557, 678
PflFI	GACNNNGTC	2 cut(s)	401, 622
PflMI	CCANNNNNTGG	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	3 cut(s)	732, 819, 856
PleI	GAGTC	2 cut(s)	140, 209
PpsI	GAGTC	2 cut(s)	140, 209
Psp124BI	GAGCTC	1 cut(s)	389
Psp1406I	AACGTT	1 cut(s)	340
Psp6I	CCWGG	3 cut(s)	48, 60, 733
PspEI	GGTNACC	1 cut(s)	793
PspFI	CCCAGC	1 cut(s)	812
PspGI	CCWGG	3 cut(s)	48, 60, 733
PspN4I	GGNNCC	2 cut(s)	156, 181
PspPI	GGNCC	1 cut(s)	529
PsyI	GACNNNGTC	2 cut(s)	401, 622
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	3 cut(s)	731, 818, 855
Sau3AI	GATC	4 cut(s)	88, 319, 423, 978
Sau96I	GGNCC	1 cut(s)	529
SchI	GAGTC	2 cut(s)	140, 210
ScrFI	CCNGG	6 cut(s)	50, 62, 107, 542, 735, 800
SduI	GDGCHC	3 cut(s)	159, 389, 482
SfaNI	GCATC	2 cut(s)	768, 826
SfcI	CTRYAG	1 cut(s)	821
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	1 cut(s)	529
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	3 cut(s)	355, 866, 987
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	2 cut(s)	532, 730
SspMI	CTAG	2 cut(s)	216, 713
SstI	GAGCTC	1 cut(s)	389
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	6 cut(s)	48, 60, 105, 540, 733, 798
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	616, 624
TaiI	ACGT	4 cut(s)	133, 196, 343, 762
TaqI	TCGA	1 cut(s)	273
TasI	AATT	3 cut(s)	355, 866, 987
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	1 cut(s)	733
TfiI	GAWTC	2 cut(s)	557, 678
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	627, 776
TseFI	GTSAC	2 cut(s)	616, 793
TseI	GCWGC	2 cut(s)	817, 854
Tsp45I	GTSAC	2 cut(s)	616, 793
TspDTI	ATGAA	3 cut(s)	363, 631, 859
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	627, 776
Tth111I	GACNNNGTC	2 cut(s)	401, 622
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	529
XapI	RAATTY	2 cut(s)	355, 866
XceI	RCATGY	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	2 cut(s)	216, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.