Rh1CG373900

respiratory chain complex III assembly

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
64321742 .. 64323266
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG373900.1

Sequence Viewer

Length: 1239 bp
ATGTCGACCTTGTTCTCAACTGCTGCCTCCTTTGCTGCAACACTGATGTTGGGCCGTTCCATGGTGGAGCAAGTCTTCAACAACTCATACCTCCAGGCTCTCTGGGCTTGGTTCCGGTCTGATCTGACTTTTGTTGTCCCGGAGTACACCGAAGTAGGAGAACGTAATCAGATATACGACTCCGTGGAGCCCTACCTCCGAGCAAAAATAGGCACCAATACGAAACGTGTCAGAGTCAGCAAAACCACTAGGCAAAAGACCACCAGCTTTACCCTTGACGACTATCAAGAAGTCACAGACACATTTGAAAACTTCAGTATTAAGTGGCGTTATGTGTGCATTGAACCAAAGGATCATCAGTTTGAAGAAAAACGTTACTATGAACTAAATTTCCACAAGAAGCACAGAGCCAAAATGAGCTCCTACTTGGACTATGTCGTTGCTCAAGCTAAAGAGATCAAAAATGCAGAAAAGGTTCTCAGGATTTATTCTCGTCGCACTTCAGGTTCGTACAAATACTGGGAATCAACAATATTAGAGCATCCTTGTACTTTTGAGACACTGGCCATGGATCCAACGGAGAAGAAAATGATCATGGACGATTTGGATAGGTTTGTGCGGAGGAAAGAGTTCTATAAGAAGGTTGGGAAGGCGTGGAAAAGAGGCTACTTGTTATATGGTCCGCCTGGTACTGGCAAATCCAGCTTGATTGCAGCCATGGCAAATTACCTCAACTACAATATATATGATTTGGAGCTTACAAGCATCTCCAACAATTCTGATTTGAGGCATTCTTTGCTGTCCACCACCAATCGCTCTATTTTGATAATTGAGGACATTGATTGCTCCTTGGATATACAGAACCGGGAAAAAGAGGAGGAATCAGATGAGCAAGTGCTTGTCCTTACTAAGGACAAGAACGAACTAAAGCAACAGACTGTGACACTGTCGGGGCTACTGAACTTCATTGATGGCCTGTGGTCAAGCTGTGGTGATGAGAGAATCATTGTGTTCACCACCAACTACAAGGATAAACTAGACCCTGCATTGTTGCGGCCAGGACGAATGGATGTGCATATACACATGTCATATTGCACTGTGAATGGATTCAAGATCCTGGCTTCTAGGTACCTTGACATTCATGATCATCCTCTCTTTGCAGAAATTGAAGGGTTGATGCAGACCACAGAGGTCACCCCGGCACAGGTTGCTGGGCAGCTACAGAATCTGATAATTTAA

Protein Analysis

412

Amino Acids

47.88

Weight (kDa)

6.53

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 23 - 113 4.3e-19 Domain associated at C-terminal with AAA
AAA PF00004 223 - 363 2.1e-19 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 365 - 407 1.9e-16 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27860
rosa_chinensis RchiOBHm_Chr1g0374801
rosa_laevigata RLG00000026714 RLG00000026717
rosa_multiflora Rmu_co8506051.1_g000001
rosa_roxburghii Rroxscaffold_4G00283270
rosa_rugosa Rorug01G0384900
rosa_samantha Rh1AG396400 Rh1BG360500 Rh1CG373900
rosa_wichuraiana Rw1G035140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1128
AccB1I GGYRCC 2 cut(s) 212, 1128
AccI GTMKAC 1 cut(s) 5
AciI CCGC 3 cut(s) 619, 683, 1054
AclI AACGTT 1 cut(s) 373
AclWI GGATC 4 cut(s) 360, 566, 579, 1108
AcoI YGGCCR 2 cut(s) 564, 1055
AcsI RAATTY 1 cut(s) 388
AcuI CTGAAG 2 cut(s) 298, 486
AfaI GTAC 5 cut(s) 146, 512, 550, 691, 1130
AfiI CCNNNNNNNGG 4 cut(s) 61, 692, 910, 1204
AflIII ACRYGT 2 cut(s) 226, 1083
AgsI TTSAA 6 cut(s) 79, 308, 344, 365, 1111, 1169
AjnI CCWGG 4 cut(s) 93, 685, 1057, 1116
AloI GAACNNNNNNTCC 2 cut(s) 375, 407
AluBI AGCT 7 cut(s) 267, 420, 449, 705, 757, 987, 1219
AluI AGCT 7 cut(s) 267, 420, 449, 705, 757, 987, 1219
Alw21I GWGCWC 1 cut(s) 422
Alw26I GTCTC 1 cut(s) 551
AlwI GGATC 4 cut(s) 360, 566, 579, 1108
AlwNI CAGNNNCTG 1 cut(s) 1228
AoxI GGCC 4 cut(s) 52, 564, 973, 1055
ApeKI GCWGC 4 cut(s) 23, 35, 713, 1216
ApoI RAATTY 1 cut(s) 388
Asp700I GAANNNNTTC 3 cut(s) 474, 629, 1106
Asp718I GGTACC 1 cut(s) 1128
AspS9I GGNCC 2 cut(s) 52, 680
AsuC2I CCSGG 3 cut(s) 140, 866, 1199
AsuHPI GGTGA 3 cut(s) 1004, 1006, 1186
AvaII GGWCC 1 cut(s) 680
BalI TGGCCA 1 cut(s) 566
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 2 cut(s) 212, 1128
BanII GRGCYC 2 cut(s) 192, 422
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 422
BbvI GCAGC 4 cut(s) 10, 22, 725, 1228
BccI CCATC 1 cut(s) 965
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 4 cut(s) 95, 687, 1059, 1118
BclI TGATCA 2 cut(s) 591, 1144
BcnI CCSGG 3 cut(s) 140, 866, 1199
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 3 cut(s) 249, 1037, 1125
BfmI CTRYAG 1 cut(s) 1220
BisI GCNGC 5 cut(s) 24, 36, 714, 1055, 1217
BlsI GCNGC 5 cut(s) 25, 37, 715, 1056, 1218
Bme1390I CCNGG 7 cut(s) 95, 140, 687, 866, 1059, 1118, 1199
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 2 cut(s) 52, 680
BmiI GGNNCC 5 cut(s) 113, 189, 214, 573, 1130
BmrFI CCNGG 7 cut(s) 95, 140, 687, 866, 1059, 1118, 1199
BmrI ACTGGG 1 cut(s) 529
BmsI GCATC 3 cut(s) 550, 774, 1167
BmuI ACTGGG 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 429
BpuMI CCSGG 3 cut(s) 140, 866, 1199
BsaJI CCNNGG 6 cut(s) 60, 183, 567, 717, 849, 1197
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 692, 910, 1204
Bse1I ACTGG 3 cut(s) 524, 567, 697
BseBI CCWGG 4 cut(s) 95, 687, 1059, 1118
BseDI CCNNGG 6 cut(s) 60, 183, 567, 717, 849, 1197
BseGI GGATG 3 cut(s) 541, 1075, 1147
BseLI CCNNNNNNNGG 4 cut(s) 61, 692, 910, 1204
BseMII CTCAG 1 cut(s) 493
BseNI ACTGG 3 cut(s) 524, 567, 697
BseRI GAGGAG 1 cut(s) 890
BseXI GCAGC 4 cut(s) 10, 22, 725, 1228
BseYI CCCAGC 1 cut(s) 1211
BshFI GGCC 4 cut(s) 54, 566, 975, 1057
BshNI GGYRCC 2 cut(s) 212, 1128
BsiHKAI GWGCWC 1 cut(s) 422
BsiSI CCGG 4 cut(s) 115, 140, 865, 1199
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 4 cut(s) 61, 692, 910, 1204
BsmAI GTCTC 1 cut(s) 551
BsmFI GGGAC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 790
BsnI GGCC 4 cut(s) 54, 566, 975, 1057
Bsp1286I GDGCHC 2 cut(s) 192, 422
Bsp143I GATC 7 cut(s) 121, 352, 456, 571, 591, 1113, 1144
Bsp19I CCATGG 3 cut(s) 60, 567, 717
BspACI CCGC 3 cut(s) 619, 683, 1054
BspANI GGCC 4 cut(s) 54, 566, 975, 1057
BspCNI CTCAG 1 cut(s) 492
BspHI TCATGA 1 cut(s) 1141
BspLI GGNNCC 5 cut(s) 113, 189, 214, 573, 1130
BspPI GGATC 4 cut(s) 360, 566, 579, 1108
BspT107I GGYRCC 2 cut(s) 212, 1128
BsrI ACTGG 3 cut(s) 524, 567, 697
BssECI CCNNGG 6 cut(s) 60, 183, 567, 717, 849, 1197
BssMI GATC 7 cut(s) 121, 352, 456, 571, 591, 1113, 1144
BssT1I CCWWGG 4 cut(s) 60, 567, 717, 849
Bst2UI CCWGG 4 cut(s) 95, 687, 1059, 1118
Bst4CI ACNGT 3 cut(s) 940, 948, 1099
BstAPI GCANNNNNTGC 2 cut(s) 796, 1208
BstDEI CTNAG 2 cut(s) 479, 909
BstDSI CCRYGG 4 cut(s) 60, 183, 567, 717
BstEII GGTNACC 1 cut(s) 1192
BstENI CCTNNNNNAGG 1 cut(s) 908
BstF5I GGATG 3 cut(s) 541, 1075, 1147
BstKTI GATC 7 cut(s) 124, 355, 459, 574, 594, 1116, 1147
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 7 cut(s) 121, 352, 456, 571, 591, 1113, 1144
BstMWI GCNNNNNNNGC 6 cut(s) 32, 104, 702, 719, 796, 1208
BstNI CCWGG 4 cut(s) 95, 687, 1059, 1118
BstNSI RCATGY 1 cut(s) 1087
BstPI GGTNACC 1 cut(s) 1192
BstSCI CCNGG 7 cut(s) 93, 138, 685, 864, 1057, 1116, 1197
BstSFI CTRYAG 1 cut(s) 1220
BstV1I GCAGC 4 cut(s) 10, 22, 725, 1228
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 2 cut(s) 571, 1113
BstYI RGATCY 2 cut(s) 571, 1113
BsuRI GGCC 4 cut(s) 54, 566, 975, 1057
BtgI CCRYGG 4 cut(s) 60, 183, 567, 717
BtsCI GGATG 3 cut(s) 541, 1075, 1147
BtsIMutI CAGTG 4 cut(s) 41, 560, 944, 1095
CaiI CAGNNNCTG 1 cut(s) 1228
CciI TCATGA 1 cut(s) 1141
Cfr13I GGNCC 2 cut(s) 52, 680
Csp6I GTAC 5 cut(s) 145, 511, 549, 690, 1129
CviAII CATG 6 cut(s) 61, 568, 595, 718, 1084, 1142
CviQI GTAC 5 cut(s) 145, 511, 549, 690, 1129
DdeI CTNAG 2 cut(s) 479, 909
DpnI GATC 7 cut(s) 123, 354, 458, 573, 593, 1115, 1146
DpnII GATC 7 cut(s) 121, 352, 456, 571, 591, 1113, 1144
EaeI YGGCCR 2 cut(s) 564, 1055
EciI GGCGGA 1 cut(s) 672
Ecl136II GAGCTC 1 cut(s) 420
Eco130I CCWWGG 4 cut(s) 60, 567, 717, 849
Eco24I GRGCYC 2 cut(s) 192, 422
Eco47I GGWCC 1 cut(s) 680
Eco53kI GAGCTC 1 cut(s) 420
Eco57I CTGAAG 2 cut(s) 298, 486
Eco91I GGTNACC 1 cut(s) 1192
EcoICRI GAGCTC 1 cut(s) 420
EcoNI CCTNNNNNAGG 1 cut(s) 908
EcoO65I GGTNACC 1 cut(s) 1192
EcoRII CCWGG 4 cut(s) 93, 685, 1057, 1116
EcoT14I CCWWGG 4 cut(s) 60, 567, 717, 849
EcoT38I GRGCYC 2 cut(s) 192, 422
ErhI CCWWGG 4 cut(s) 60, 567, 717, 849
FaeI CATG 6 cut(s) 64, 571, 598, 721, 1087, 1145
FaqI GGGAC 1 cut(s) 122
FatI CATG 6 cut(s) 60, 567, 594, 717, 1083, 1141
FbaI TGATCA 2 cut(s) 591, 1144
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 24, 36, 714, 1055, 1217
FokI GGATG 3 cut(s) 528, 1082, 1134
FriOI GRGCYC 2 cut(s) 192, 422
Fsp4HI GCNGC 5 cut(s) 24, 36, 714, 1055, 1217
FspBI CTAG 3 cut(s) 249, 1037, 1125
GluI GCNGC 5 cut(s) 24, 36, 714, 1055, 1217
GsaI CCCAGC 1 cut(s) 1215
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 4 cut(s) 54, 566, 975, 1057
HapII CCGG 4 cut(s) 115, 140, 865, 1199
Hin1II CATG 6 cut(s) 64, 571, 598, 721, 1087, 1145
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 7 cut(s) 179, 234, 524, 881, 1002, 1107, 1225
HpaII CCGG 4 cut(s) 115, 140, 865, 1199
HphI GGTGA 3 cut(s) 1004, 1006, 1186
Hpy166II GTNNAC 4 cut(s) 6, 147, 804, 1014
Hpy188I TCNGA 8 cut(s) 121, 126, 171, 200, 233, 781, 886, 1230
Hpy188III TCNNGA 4 cut(s) 287, 481, 1111, 1142
Hpy8I GTNNAC 4 cut(s) 6, 147, 804, 1014
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 3 cut(s) 634, 643, 1163
HpyCH4III ACNGT 3 cut(s) 940, 948, 1099
HpyCH4IV ACGT 3 cut(s) 163, 226, 373
HpyCH4V TGCA 9 cut(s) 38, 339, 467, 713, 1046, 1075, 1095, 1160, 1180
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 104, 702, 719, 796, 1208
HpyF3I CTNAG 2 cut(s) 479, 909
HpySE526I ACGT 3 cut(s) 163, 226, 373
Hsp92II CATG 6 cut(s) 64, 571, 598, 721, 1087, 1145
KpnI GGTACC 1 cut(s) 1132
Ksp22I TGATCA 2 cut(s) 591, 1144
Kzo9I GATC 7 cut(s) 121, 352, 456, 571, 591, 1113, 1144
LmnI GCTCC 5 cut(s) 67, 187, 425, 754, 851
Lsp1109I GCAGC 4 cut(s) 10, 22, 725, 1228
LweI GCATC 3 cut(s) 550, 774, 1167
MaeI CTAG 3 cut(s) 249, 1037, 1125
MaeII ACGT 3 cut(s) 163, 226, 373
MaeIII GTNAC 4 cut(s) 292, 374, 940, 1192
MalI GATC 7 cut(s) 123, 354, 458, 573, 593, 1115, 1146
MboI GATC 7 cut(s) 121, 352, 456, 571, 591, 1113, 1144
MboII GAAGA 3 cut(s) 67, 377, 595
MflI RGATCY 2 cut(s) 571, 1113
MhlI GDGCHC 2 cut(s) 192, 422
MlsI TGGCCA 1 cut(s) 566
MluCI AATT 6 cut(s) 388, 724, 775, 828, 1164, 1233
MluNI TGGCCA 1 cut(s) 566
MlyI GAGTC 2 cut(s) 173, 243
MmeI TCCRAC 2 cut(s) 599, 795
Mox20I TGGCCA 1 cut(s) 566
MroXI GAANNNNTTC 3 cut(s) 474, 629, 1106
MscI TGGCCA 1 cut(s) 566
MseI TTAA 2 cut(s) 321, 1237
Msp20I TGGCCA 1 cut(s) 566
MspI CCGG 4 cut(s) 115, 140, 865, 1199
MspR9I CCNGG 7 cut(s) 95, 140, 687, 866, 1059, 1118, 1199
Mva1269I GAATGC 1 cut(s) 790
MvaI CCWGG 4 cut(s) 95, 687, 1059, 1118
MwoI GCNNNNNNNGC 6 cut(s) 32, 104, 702, 719, 796, 1208
NciI CCSGG 3 cut(s) 140, 866, 1199
NcoI CCATGG 3 cut(s) 60, 567, 717
NdeII GATC 7 cut(s) 121, 352, 456, 571, 591, 1113, 1144
NlaIII CATG 6 cut(s) 64, 571, 598, 721, 1087, 1145
NlaIV GGNNCC 5 cut(s) 113, 189, 214, 573, 1130
NmuCI GTSAC 3 cut(s) 292, 940, 1192
NspI RCATGY 1 cut(s) 1087
PagI TCATGA 1 cut(s) 1141
PciI ACATGT 1 cut(s) 1083
PctI GAATGC 1 cut(s) 790
PdmI GAANNNNTTC 3 cut(s) 474, 629, 1106
PfeI GAWTC 5 cut(s) 524, 881, 1002, 1107, 1225
PflFI GACNNNGTC 2 cut(s) 434, 946
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 5 cut(s) 25, 37, 715, 1056, 1218
PleI GAGTC 2 cut(s) 173, 242
PpsI GAGTC 2 cut(s) 173, 242
PscI ACATGT 1 cut(s) 1083
Psp124BI GAGCTC 1 cut(s) 422
Psp1406I AACGTT 1 cut(s) 373
Psp6I CCWGG 4 cut(s) 93, 685, 1057, 1116
PspEI GGTNACC 1 cut(s) 1192
PspFI CCCAGC 1 cut(s) 1211
PspGI CCWGG 4 cut(s) 93, 685, 1057, 1116
PspN4I GGNNCC 5 cut(s) 113, 189, 214, 573, 1130
PspPI GGNCC 2 cut(s) 52, 680
PstNI CAGNNNCTG 1 cut(s) 1228
PsuI RGATCY 2 cut(s) 571, 1113
PsyI GACNNNGTC 2 cut(s) 434, 946
RsaI GTAC 5 cut(s) 146, 512, 550, 691, 1130
RsaNI GTAC 5 cut(s) 145, 511, 549, 690, 1129
SacI GAGCTC 1 cut(s) 422
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 321, 1237
SatI GCNGC 5 cut(s) 24, 36, 714, 1055, 1217
Sau3AI GATC 7 cut(s) 121, 352, 456, 571, 591, 1113, 1144
Sau96I GGNCC 2 cut(s) 52, 680
SchI GAGTC 2 cut(s) 173, 243
ScrFI CCNGG 7 cut(s) 95, 140, 687, 866, 1059, 1118, 1199
SduI GDGCHC 2 cut(s) 192, 422
SfaNI GCATC 3 cut(s) 550, 774, 1167
SfcI CTRYAG 1 cut(s) 1220
SinI GGWCC 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
Sse9I AATT 6 cut(s) 388, 724, 775, 828, 1164, 1233
SsiI CCGC 3 cut(s) 619, 683, 1054
SspI AATATT 1 cut(s) 534
SspMI CTAG 3 cut(s) 249, 1037, 1125
SstI GAGCTC 1 cut(s) 422
StyD4I CCNGG 7 cut(s) 93, 138, 685, 864, 1057, 1116, 1197
StyI CCWWGG 4 cut(s) 60, 567, 717, 849
TaaI ACNGT 3 cut(s) 940, 948, 1099
TaiI ACGT 3 cut(s) 166, 229, 376
TaqI TCGA 1 cut(s) 5
TasI AATT 6 cut(s) 388, 724, 775, 828, 1164, 1233
TatI WGTACW 2 cut(s) 144, 548
TauI GCSGC 1 cut(s) 1057
TfiI GAWTC 5 cut(s) 524, 881, 1002, 1107, 1225
Tru1I TTAA 2 cut(s) 321, 1237
Tru9I TTAA 2 cut(s) 321, 1237
TscAI CASTG 4 cut(s) 48, 567, 951, 1102
TseFI GTSAC 3 cut(s) 292, 940, 1192
TseI GCWGC 4 cut(s) 23, 35, 713, 1216
Tsp45I GTSAC 3 cut(s) 292, 940, 1192
TspDTI ATGAA 3 cut(s) 396, 955, 1130
TspGWI ACGGA 2 cut(s) 172, 593
TspRI CASTG 4 cut(s) 48, 567, 951, 1102
Tth111I GACNNNGTC 2 cut(s) 434, 946
VpaK11BI GGWCC 1 cut(s) 680
XagI CCTNNNNNAGG 1 cut(s) 908
XapI RAATTY 1 cut(s) 388
XceI RCATGY 1 cut(s) 1087
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 3 cut(s) 474, 629, 1106
XspI CTAG 3 cut(s) 249, 1037, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.