Rorug01G0384900

respiratory chain complex III assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018082
Physical Location & Seq
Reverse (-)
49658435 .. 49659944
1510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0384900.1

Sequence Viewer

Length: 930 bp
ATGTCTGCTTATGGCCACCATATGGAGCGAGAGTACTCCGCCCAGAGTCTTTCGAGTCGTGAAGTTTCTGAGAGAACAAGTAGTTATGCAATGGAGTCGGGGTTCTACATGTCGTCCTTTGCTACAACAATCTTCATTGCTTCACTCGTCACAGTCGGGTTATTATTCATCACTTTGCTGATTGCACTGACGGTAATGCTGCAGTCTTGTGAAAGCAAGAGCCGTGGAATCGTTGAGGTTCAGAAACCAAGTTATGATTCAAATTACTGCCATATCTTCTCTCTGCATATGGAACTCAACAACTTTGAGGCAGATCAGTTCCCTTCAGTATGCAGGGTTGTTGCTTCTCAGTACATCAAACAAGGTCAATATGCAACAGATTTAAATTCTACCATGGGGATAGTTGAGGACTATTTTGGTAGTATTACTCCGCAACACGATGGTCTGGATGTTGTGTTGATGGATGTAGATGACATTCTTTCTTTAAACCCCCAGTATAGTAATTTTTCAGTGCACCGATATGATCACTATGGTTGTAGTGATTGTATGGAAGAGGCAAAGCATCTGAAGCACATGCTTATTCTGAGACTATACATGAAACTTCATTCTAGTGGTTGGCCTTTGATTTTGTTATCAAGAAAGCCAGAGACACATAGGAATACCTCCGTAGAGTATCTTGTATCTGCCGGATACACAGCTTGGTCTTCATTGATTATGAGATCAGAAGCTGAACTGCATATGGATAGCAGTGACTACTTCTCTAAACGAAGGGCTGCAATGCAGAGAGAAGGATTTCGCATAATCGGCATTATAAGCAGTCACATGGATGCTCTAAGAGGACCATTTTTAGGAAGGCGTATTTTTAAGCTTCCGAACCCAATATACAACAATTTTGAATATCAAATTGAAGACATACATACACCAAAATAG

Protein Analysis

309

Amino Acids

35.38

Weight (kDa)

6.04

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 84 - 296 4.9e-29 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27860
rosa_chinensis RchiOBHm_Chr1g0374801
rosa_laevigata RLG00000026714 RLG00000026717
rosa_multiflora Rmu_co8506051.1_g000001
rosa_roxburghii Rroxscaffold_4G00283270
rosa_rugosa Rorug01G0384900
rosa_samantha Rh1AG396400 Rh1BG360500 Rh1CG373900
rosa_wichuraiana Rw1G035140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 812
AccB7I CCANNNNNTGG 1 cut(s) 22
AciI CCGC 2 cut(s) 39, 431
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 2 cut(s) 309, 587
AfaI GTAC 2 cut(s) 35, 353
AfiI CCNNNNNNNGG 2 cut(s) 22, 848
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 3 cut(s) 261, 896, 908
AjuI GAANNNNNNNTTGG 2 cut(s) 241, 273
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 3 cut(s) 698, 728, 868
AluI AGCT 3 cut(s) 698, 728, 868
Alw21I GWGCWC 1 cut(s) 516
Alw26I GTCTC 2 cut(s) 580, 641
Alw44I GTGCAC 1 cut(s) 512
AlwNI CAGNNNCTG 1 cut(s) 728
AoxI GGCC 2 cut(s) 13, 617
ApaLI GTGCAC 1 cut(s) 512
ApeKI GCWGC 2 cut(s) 199, 773
ApoI RAATTY 1 cut(s) 385
Asp700I GAANNNNTTC 1 cut(s) 792
AspS9I GGNCC 1 cut(s) 839
AvaII GGWCC 1 cut(s) 839
BaeGI GKGCMC 1 cut(s) 516
BalI TGGCCA 1 cut(s) 15
BbsI GAAGAC 2 cut(s) 696, 915
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 2 cut(s) 186, 760
BccI CCATC 2 cut(s) 434, 454
BceAI ACGGC 1 cut(s) 207
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciVI GTATCC 1 cut(s) 683
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 2 cut(s) 580, 641
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 1 cut(s) 200
BfuI GTATCC 1 cut(s) 683
BisI GCNGC 2 cut(s) 200, 774
BlsI GCNGC 2 cut(s) 201, 775
BmcAI AGTACT 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 839
BmgT120I GGNCC 1 cut(s) 839
BmrI ACTGGG 1 cut(s) 487
BmsI GCATC 2 cut(s) 571, 817
BmuI ACTGGG 1 cut(s) 487
BpiI GAAGAC 2 cut(s) 696, 915
BsaJI CCNNGG 2 cut(s) 223, 393
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 86, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 848
Bse1I ACTGG 1 cut(s) 493
Bse3DI GCAATG 3 cut(s) 96, 135, 783
BseDI CCNNGG 2 cut(s) 223, 393
BseGI GGATG 3 cut(s) 454, 469, 832
BseLI CCNNNNNNNGG 2 cut(s) 22, 848
BseMI GCAATG 3 cut(s) 96, 135, 783
BseMII CTCAG 3 cut(s) 60, 362, 575
BseNI ACTGG 1 cut(s) 493
BseSI GKGCMC 1 cut(s) 516
BseXI GCAGC 2 cut(s) 186, 760
BshFI GGCC 2 cut(s) 15, 619
BsiHKAI GWGCWC 1 cut(s) 516
BsiSI CCGG 1 cut(s) 687
BslI CCNNNNNNNGG 2 cut(s) 22, 848
BsmAI GTCTC 2 cut(s) 580, 641
BsnI GGCC 2 cut(s) 15, 619
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 3 cut(s) 313, 523, 719
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 2 cut(s) 39, 431
BspANI GGCC 2 cut(s) 15, 619
BspCNI CTCAG 3 cut(s) 61, 361, 576
BspMAI CTGCAG 1 cut(s) 204
BsrDI GCAATG 3 cut(s) 96, 135, 783
BsrI ACTGG 1 cut(s) 493
BssECI CCNNGG 2 cut(s) 223, 393
BssMI GATC 3 cut(s) 313, 523, 719
BssT1I CCWWGG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 154, 193
Bst6I CTCTTC 1 cut(s) 546
BstDEI CTNAG 4 cut(s) 69, 348, 584, 833
BstDSI CCRYGG 2 cut(s) 223, 393
BstF5I GGATG 3 cut(s) 454, 469, 832
BstKTI GATC 3 cut(s) 316, 526, 722
BstMAI GTCTC 2 cut(s) 580, 641
BstMBI GATC 3 cut(s) 313, 523, 719
BstMWI GCNNNNNNNGC 3 cut(s) 568, 804, 813
BstNSI RCATGY 2 cut(s) 112, 577
BstSFI CTRYAG 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 516
BstV1I GCAGC 2 cut(s) 186, 760
BstV2I GAAGAC 2 cut(s) 696, 915
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 2 cut(s) 15, 619
BtgI CCRYGG 2 cut(s) 223, 393
BtsCI GGATG 3 cut(s) 454, 469, 832
BtsI GCAGTG 1 cut(s) 754
BtsIMutI CAGTG 3 cut(s) 185, 516, 754
CaiI CAGNNNCTG 1 cut(s) 728
Cfr13I GGNCC 1 cut(s) 839
Csp6I GTAC 2 cut(s) 34, 352
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 5 cut(s) 109, 394, 574, 595, 823
CviJI RGCY 8 cut(s) 15, 222, 619, 643, 698, 728, 773, 868
CviKI_1 RGCY 8 cut(s) 15, 222, 619, 643, 698, 728, 773, 868
CviQI GTAC 2 cut(s) 34, 352
DdeI CTNAG 4 cut(s) 69, 348, 584, 833
DpnI GATC 3 cut(s) 315, 525, 721
DpnII GATC 3 cut(s) 313, 523, 719
DraI TTTAAA 2 cut(s) 384, 486
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
EciI GGCGGA 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 839
Eco57I CTGAAG 2 cut(s) 309, 587
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 5 cut(s) 112, 397, 577, 598, 826
FatI CATG 5 cut(s) 108, 393, 573, 594, 822
FauNDI CATATG 3 cut(s) 21, 288, 738
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 2 cut(s) 200, 774
FokI GGATG 3 cut(s) 461, 476, 839
Fsp4HI GCNGC 2 cut(s) 200, 774
FspBI CTAG 1 cut(s) 609
GluI GCNGC 2 cut(s) 200, 774
HaeIII GGCC 2 cut(s) 15, 619
HapII CCGG 1 cut(s) 687
Hin1II CATG 5 cut(s) 112, 397, 577, 598, 826
HindIII AAGCTT 1 cut(s) 866
HinfI GANTC 5 cut(s) 46, 55, 95, 228, 257
HpaII CCGG 1 cut(s) 687
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 6 cut(s) 70, 243, 567, 585, 724, 873
Hpy188III TCNNGA 3 cut(s) 59, 446, 636
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 4 cut(s) 333, 762, 782, 846
HpyCH4III ACNGT 2 cut(s) 154, 193
HpyF10VI GCNNNNNNNGC 3 cut(s) 568, 804, 813
HpyF3I CTNAG 4 cut(s) 69, 348, 584, 833
Hsp92II CATG 5 cut(s) 112, 397, 577, 598, 826
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 3 cut(s) 313, 523, 719
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 6 cut(s) 56, 319, 431, 506, 657, 700
Lsp1109I GCAGC 2 cut(s) 186, 760
LweI GCATC 2 cut(s) 571, 817
MaeI CTAG 1 cut(s) 609
MaeIII GTNAC 3 cut(s) 148, 749, 818
MalI GATC 3 cut(s) 315, 525, 721
MboI GATC 3 cut(s) 313, 523, 719
MboII GAAGA 5 cut(s) 124, 268, 563, 696, 920
MhlI GDGCHC 1 cut(s) 516
MlsI TGGCCA 1 cut(s) 15
MluCI AATT 5 cut(s) 262, 385, 502, 889, 903
MluNI TGGCCA 1 cut(s) 15
MlyI GAGTC 3 cut(s) 55, 64, 104
MnlI CCTC 6 cut(s) 229, 301, 400, 547, 673, 830
Mox20I TGGCCA 1 cut(s) 15
MroXI GAANNNNTTC 1 cut(s) 792
MscI TGGCCA 1 cut(s) 15
MseI TTAA 3 cut(s) 383, 485, 864
MslI CAYNNNNRTG 3 cut(s) 519, 609, 825
Msp20I TGGCCA 1 cut(s) 15
MspI CCGG 1 cut(s) 687
MwoI GCNNNNNNNGC 3 cut(s) 568, 804, 813
NcoI CCATGG 1 cut(s) 393
NdeI CATATG 3 cut(s) 21, 288, 738
NdeII GATC 3 cut(s) 313, 523, 719
NlaIII CATG 5 cut(s) 112, 397, 577, 598, 826
NmuCI GTSAC 3 cut(s) 148, 749, 818
NspI RCATGY 2 cut(s) 112, 577
PciI ACATGT 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 2 cut(s) 228, 257
PflMI CCANNNNNTGG 1 cut(s) 22
PkrI GCNGC 2 cut(s) 201, 775
PleI GAGTC 3 cut(s) 54, 63, 103
PpsI GAGTC 3 cut(s) 54, 63, 103
PscI ACATGT 1 cut(s) 108
PsiI TTATAA 1 cut(s) 812
PspPI GGNCC 1 cut(s) 839
PsrI GAACNNNNNNTAC 2 cut(s) 866, 898
PstI CTGCAG 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 728
RsaI GTAC 2 cut(s) 35, 353
RsaNI GTAC 2 cut(s) 34, 352
RseI CAYNNNNRTG 3 cut(s) 519, 609, 825
SaqAI TTAA 3 cut(s) 383, 485, 864
SatI GCNGC 2 cut(s) 200, 774
Sau3AI GATC 3 cut(s) 313, 523, 719
Sau96I GGNCC 1 cut(s) 839
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 3 cut(s) 55, 64, 104
SduI GDGCHC 1 cut(s) 516
SetI ASST 6 cut(s) 240, 367, 665, 700, 730, 870
SfaNI GCATC 2 cut(s) 571, 817
SfcI CTRYAG 1 cut(s) 200
SinI GGWCC 1 cut(s) 839
SmiI ATTTAAAT 1 cut(s) 384
SmiMI CAYNNNNRTG 3 cut(s) 519, 609, 825
Sse9I AATT 5 cut(s) 262, 385, 502, 889, 903
SsiI CCGC 2 cut(s) 39, 431
SspMI CTAG 1 cut(s) 609
StyI CCWWGG 1 cut(s) 393
SwaI ATTTAAAT 1 cut(s) 384
TaaI ACNGT 2 cut(s) 154, 193
TaqI TCGA 1 cut(s) 53
TasI AATT 5 cut(s) 262, 385, 502, 889, 903
TatI WGTACW 2 cut(s) 33, 351
TfiI GAWTC 2 cut(s) 228, 257
Tru1I TTAA 3 cut(s) 383, 485, 864
Tru9I TTAA 3 cut(s) 383, 485, 864
TscAI CASTG 3 cut(s) 192, 516, 754
TseFI GTSAC 3 cut(s) 148, 749, 818
TseI GCWGC 2 cut(s) 199, 773
Tsp45I GTSAC 3 cut(s) 148, 749, 818
TspDTI ATGAA 5 cut(s) 124, 157, 593, 611, 696
TspGWI ACGGA 1 cut(s) 655
TspRI CASTG 3 cut(s) 192, 516, 754
Van91I CCANNNNNTGG 1 cut(s) 22
VneI GTGCAC 1 cut(s) 512
VpaK11BI GGWCC 1 cut(s) 839
XapI RAATTY 1 cut(s) 385
XceI RCATGY 2 cut(s) 112, 577
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 1 cut(s) 609
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.