Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018082

Physical Location & Seq

Genomic Coordinates Forward (+)

62403935 .. 62405325

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG396400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCGACCTTGTTCTCAACTGCTGCCTCCTTTGCTACAACACTGATGTTGGGCCGTTCCATGGTGGATCAAGTCTTCAACAACTCACACCTCCAGGCTCTCTGGGCTTGGTTCCGGTCTGATCTGACTTTTGTTGTCCCGGAGTACACCGAAGTAGGAGAACGTAATCAGATATACGACTCCGTGGAGCCCTACCTCCGAGCAAAAATAGGCACCAATACGAAACGTGTCAGAGTCAGCAAAACCACTAGGCAAAAGACCACCAGCTTTACCCTTGACGACTATCAAGAAGTCACAGACACATTTGAAAACTTCAGTATTAAGTGGCGTTATGTGTGCATTGAACCAAAGGATCATCACTCTGAAGAAAAACGTTACTATGAACTAAATTTCCACAAGAAGCACAGAGCCAAAATGAGCTCCTACTTGGACTATGTCGTTGCTCAAGCTAAAGAGATCAAAAATGCAGAAAAGGTTCTCAGGATTTATTCTCGTTGCACTTCAGAAATTGAAGGGTTGATGCAGACCACAGAGGTCACCCCGGCACAGGTAGCTGGGCAGCTACAGGTGAGTTATGATGCTGATGTTGCTCTTGCAGCGCTGGTGAAATTCATCAAGGAAAAGAAGGAGGAGGATGAGAAGAAGGAGAAGGAAAAAAAGAAAGAAGCACAAGCAAAGAAACTAAGGAGAAAAAGGTTGCTGGCTCTTTTTCAGAAGATCAAGGAAATTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

244

Amino Acids

28.55

Weight (kDa)

9.31

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	26 - 113	2.5e-19	Domain associated at C-terminal with AAA
AAA_lid_At3g28540	PF25568	168 - 217	9.6e-10	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018082)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g27860
rosa_chinensis	RchiOBHm_Chr1g0374801
rosa_laevigata	RLG00000026714 RLG00000026717
rosa_multiflora	Rmu_co8506051.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283270
rosa_rugosa	Rorug01G0384900
rosa_samantha	Rh1AG396400 Rh1BG360500 Rh1CG373900
rosa_wichuraiana	Rw1G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	5
AclI	AACGTT	1 cut(s)	373
AclWI	GGATC	2 cut(s)	75, 360
AcsI	RAATTY	2 cut(s)	388, 608
AcuI	CTGAAG	3 cut(s)	298, 384, 486
AfaI	GTAC	1 cut(s)	146
AfeI	AGCGCT	1 cut(s)	600
AfiI	CCNNNNNNNGG	2 cut(s)	61, 547
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	4 cut(s)	79, 308, 344, 512
AjnI	CCWGG	1 cut(s)	93
AloI	GAACNNNNNNTCC	2 cut(s)	375, 407
AluBI	AGCT	5 cut(s)	267, 420, 449, 554, 562
AluI	AGCT	5 cut(s)	267, 420, 449, 554, 562
Alw21I	GWGCWC	1 cut(s)	422
AlwI	GGATC	2 cut(s)	75, 360
Aor51HI	AGCGCT	1 cut(s)	600
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	3 cut(s)	23, 559, 596
ApoI	RAATTY	2 cut(s)	388, 608
Asp700I	GAANNNNTTC	1 cut(s)	474
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	1 cut(s)	52
AsuC2I	CCSGG	2 cut(s)	140, 542
AsuHPI	GGTGA	3 cut(s)	529, 580, 616
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	192, 422
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	3 cut(s)	10, 571, 608
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	95
BcnI	CCSGG	2 cut(s)	140, 542
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	563
BfoI	RGCGCY	1 cut(s)	602
BisI	GCNGC	3 cut(s)	24, 560, 597
BlsI	GCNGC	3 cut(s)	25, 561, 598
Bme1390I	CCNGG	3 cut(s)	95, 140, 542
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	3 cut(s)	113, 189, 214
BmrFI	CCNGG	3 cut(s)	95, 140, 542
BmsI	GCATC	2 cut(s)	510, 568
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	429
BpuMI	CCSGG	2 cut(s)	140, 542
BsaJI	CCNNGG	3 cut(s)	60, 183, 540
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 547
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	3 cut(s)	60, 183, 540
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	2 cut(s)	61, 547
BseMII	CTCAG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	644
BseXI	GCAGC	3 cut(s)	10, 571, 608
BseYI	CCCAGC	1 cut(s)	554
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	3 cut(s)	115, 140, 542
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	61, 547
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	192, 422
Bsp143I	GATC	5 cut(s)	67, 121, 352, 456, 717
Bsp19I	CCATGG	1 cut(s)	60
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	492
BspLI	GGNNCC	3 cut(s)	113, 189, 214
BspPI	GGATC	2 cut(s)	75, 360
BspT107I	GGYRCC	1 cut(s)	212
BssECI	CCNNGG	3 cut(s)	60, 183, 540
BssMI	GATC	5 cut(s)	67, 121, 352, 456, 717
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	702
BstDEI	CTNAG	2 cut(s)	479, 683
BstDSI	CCRYGG	2 cut(s)	60, 183
BstEII	GGTNACC	1 cut(s)	535
BstF5I	GGATG	1 cut(s)	640
BstH2I	RGCGCY	1 cut(s)	602
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	5 cut(s)	70, 124, 355, 459, 720
BstMBI	GATC	5 cut(s)	67, 121, 352, 456, 717
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 104, 551, 587, 596
BstNI	CCWGG	1 cut(s)	95
BstPI	GGTNACC	1 cut(s)	535
BstSCI	CCNGG	3 cut(s)	93, 138, 540
BstSFI	CTRYAG	1 cut(s)	563
BstV1I	GCAGC	3 cut(s)	10, 571, 608
BstV2I	GAAGAC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	2 cut(s)	60, 183
BtsCI	GGATG	1 cut(s)	640
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	702
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	479, 683
DpnI	GATC	5 cut(s)	69, 123, 354, 458, 719
DpnII	GATC	5 cut(s)	67, 121, 352, 456, 717
Ecl136II	GAGCTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	2 cut(s)	192, 422
Eco47III	AGCGCT	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	420
Eco57I	CTGAAG	3 cut(s)	298, 384, 486
Eco91I	GGTNACC	1 cut(s)	535
EcoICRI	GAGCTC	1 cut(s)	420
EcoO65I	GGTNACC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	192, 422
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	64
FaiI	YATR	7 cut(s)	62, 175, 333, 381, 435, 576, 733
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	24, 560, 597
FokI	GGATG	1 cut(s)	647
FriOI	GRGCYC	2 cut(s)	192, 422
Fsp4HI	GCNGC	3 cut(s)	24, 560, 597
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	3 cut(s)	24, 560, 597
GsaI	CCCAGC	1 cut(s)	558
GsuI	CTGGAG	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	602
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	3 cut(s)	115, 140, 542
HhaI	GCGC	1 cut(s)	601
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	179, 234
HpaII	CCGG	3 cut(s)	115, 140, 542
HphI	GGTGA	3 cut(s)	529, 580, 616
Hpy166II	GTNNAC	2 cut(s)	6, 147
Hpy188I	TCNGA	8 cut(s)	121, 126, 171, 200, 233, 364, 505, 714
Hpy188III	TCNNGA	2 cut(s)	287, 481
Hpy8I	GTNNAC	2 cut(s)	6, 147
HpyAV	CCTTC	4 cut(s)	506, 619, 637, 643
HpyCH4IV	ACGT	3 cut(s)	163, 226, 373
HpyCH4V	TGCA	5 cut(s)	339, 467, 498, 523, 596
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 104, 551, 587, 596
HpyF3I	CTNAG	2 cut(s)	479, 683
HpySE526I	ACGT	3 cut(s)	163, 226, 373
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	599
Kzo9I	GATC	5 cut(s)	67, 121, 352, 456, 717
LmnI	GCTCC	2 cut(s)	187, 425
Lsp1109I	GCAGC	3 cut(s)	10, 571, 608
LweI	GCATC	2 cut(s)	510, 568
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	3 cut(s)	163, 226, 373
MaeIII	GTNAC	3 cut(s)	292, 374, 535
MalI	GATC	5 cut(s)	69, 123, 354, 458, 719
MboI	GATC	5 cut(s)	67, 121, 352, 456, 717
MboII	GAAGA	4 cut(s)	67, 377, 652, 727
MhlI	GDGCHC	2 cut(s)	192, 422
MluCI	AATT	4 cut(s)	388, 507, 608, 726
MlyI	GAGTC	2 cut(s)	173, 243
MnlI	CCTC	6 cut(s)	37, 101, 206, 526, 622, 625
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	1 cut(s)	321
MspI	CCGG	3 cut(s)	115, 140, 542
MspR9I	CCNGG	3 cut(s)	95, 140, 542
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	5 cut(s)	32, 104, 551, 587, 596
NciI	CCSGG	2 cut(s)	140, 542
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	5 cut(s)	67, 121, 352, 456, 717
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	3 cut(s)	113, 189, 214
NmuCI	GTSAC	2 cut(s)	292, 535
PdmI	GAANNNNTTC	1 cut(s)	474
PflFI	GACNNNGTC	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	25, 561, 598
PleI	GAGTC	2 cut(s)	173, 242
PpsI	GAGTC	2 cut(s)	173, 242
Psp124BI	GAGCTC	1 cut(s)	422
Psp1406I	AACGTT	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	93
PspEI	GGTNACC	1 cut(s)	535
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	3 cut(s)	113, 189, 214
PspPI	GGNCC	1 cut(s)	52
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	422
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	3 cut(s)	24, 560, 597
Sau3AI	GATC	5 cut(s)	67, 121, 352, 456, 717
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	2 cut(s)	173, 243
ScrFI	CCNGG	3 cut(s)	95, 140, 542
SduI	GDGCHC	2 cut(s)	192, 422
SfaNI	GCATC	2 cut(s)	510, 568
SfcI	CTRYAG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	4 cut(s)	388, 507, 608, 726
SspMI	CTAG	1 cut(s)	249
SstI	GAGCTC	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	93, 138, 540
StyI	CCWWGG	1 cut(s)	60
TaiI	ACGT	3 cut(s)	166, 229, 376
TaqI	TCGA	1 cut(s)	5
TasI	AATT	4 cut(s)	388, 507, 608, 726
TatI	WGTACW	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	2 cut(s)	292, 535
TseI	GCWGC	3 cut(s)	23, 559, 596
Tsp45I	GTSAC	2 cut(s)	292, 535
TspDTI	ATGAA	2 cut(s)	396, 601
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	48
Tth111I	GACNNNGTC	1 cut(s)	434
XapI	RAATTY	2 cut(s)	388, 608
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.