RLG00000026717

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018082
Physical Location & Seq
Reverse (-)
5274878 .. 5276317
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026717

Sequence Viewer

Length: 1440 bp
ATGTCCATCTTCTTCTCAACTTACGGCTCCTTTGCCGCAACAGTGATCTTTGGCCGTTCCCTGGCAGAGCAAATCATCCCGAAGCAGGTGAGAAAATACATGTTCTCACTCCTCATGTCGTCCTTGTTCTCTTCTGAGCGAACTTTTGTGGTTGAAGAGTATACTGAAGTCGGAGAACGCAACCAAATATACGACTACGTTGAGCTCTACCTCCGAGCTAAAATTGGCCCCCAAACTCGAAGCGTCCGCATTAGCAAAACCCCTAAGCAGAAGACCACCGCCTTCGCCCTCGACGACGATCAAGAAGTCACCGACACATTCGAAAACTTCAGTGTCAGGTGGCGTTATGTGTGCATTGAACCAAAGGACCGTCTCTCCGATGAAAAGCATTTATACAAACTGATTTTCCACAAGAAGCACAGAGGTTATGTGATAGACTCCTACTTGGCCAATGTGTATGCTCAGGCTAAAGACATCAAGAAAGGGGAAAAGGTCCTCAAGATTTACACTCGCAGTCAGTCTTCACATAAATTCTGGGAATCGACAATATTTGAGCATCCTTCAACTTTTGCCACATTAGCCATGGAACCTGCGGAAAAGAAAAGGATTATGGACGATTTGGACTTGTTTGTGCAGAGAAGGGAGTTCTATAAGAAGGTTGGGAAGGCGTGGAAAAGAGGCTACTTGTTATATGGTCCACCTGGTACTGGCAAATCCAGCTTGATTGCGGCCATGGCTAATCACGTCCACTACAATGTATATGATTTGGAGCTTACAAGCATCTCTGACAATGCTGAATTGAGAAAAGCTTTGTTGTCTACCTCCAATCGTTCTGTTTTGGTGATCGAGGACATTGATTGCTCGTTGGAAATACAGAACCGCGAGAAAGAGGAGGAGGAATCATCAGGCGGGGAGGATTCTTCTTCCTCTAAGAAGAAGTACAAGCAACAACAGAAGGTGACGCTTTCGGGGTTGCTCAACATGATTGATGGTCTGTGGTCAAGCTGTGGTGATCAAAGACTCATTGTATTCACCACCAACTACAAGGACAAGCTAGACCCTGCATTGTTGCGTCCGGGGCGAATGGACGTGCATATCAACATGTCGTATTGCACTCCGAATGGGTTCAGGATCTTGGCTTCTAATTACCTCGACATTCAGGAGAGCAGCCCTCATCCTCTCTGCGGAGAAATTGAAGGGTTGATAGATAGCATGGAGGTCACCCCTGCACAGGTTGCAGGGGAGCTACAGGTGAGTAACAATGCTGATGTTGCCCTTAAAGGGCTTCTGGATTTCCTCAAGGATATGAAGAAGAAGAACGAAGAGAAGAATAAAAAAGAGGAAGAAGAGGCAGACAAGTTAGACAACAAAGAAAAAGATGAAGAAGAGGCGGGCGACAACAAAGAAACTAACAAAGAAAAGGTTGCTGTAATAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

480

Amino Acids

54.87

Weight (kDa)

6.1

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 26 - 118 3.4e-21 Domain associated at C-terminal with AAA
AAA PF00004 228 - 369 9.6e-19 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 371 - 447 2.1e-19 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018082)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27860
rosa_chinensis RchiOBHm_Chr1g0374801
rosa_laevigata RLG00000026714 RLG00000026717
rosa_multiflora Rmu_co8506051.1_g000001
rosa_roxburghii Rroxscaffold_4G00283270
rosa_rugosa Rorug01G0384900
rosa_samantha Rh1AG396400 Rh1BG360500 Rh1CG373900
rosa_wichuraiana Rw1G035140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
Acc36I ACCTGC 2 cut(s) 76, 598
AccI GTMKAC 2 cut(s) 161, 818
AccII CGCG 1 cut(s) 882
AciI CCGC 9 cut(s) 36, 247, 279, 593, 728, 880, 909, 1185, 1391
AclWI GGATC 1 cut(s) 1139
AcoI YGGCCR 3 cut(s) 52, 447, 729
AcsI RAATTY 1 cut(s) 530
AcuI CTGAAG 2 cut(s) 186, 313
AfaI GTAC 2 cut(s) 706, 941
AfiI CCNNNNNNNGG 6 cut(s) 61, 85, 707, 1184, 1231, 1281
AflIII ACRYGT 2 cut(s) 99, 1101
AgsI TTSAA 4 cut(s) 155, 359, 564, 1196
AjiI CACGTC 2 cut(s) 745, 1090
AjnI CCWGG 2 cut(s) 60, 700
AluBI AGCT 8 cut(s) 205, 218, 720, 772, 809, 1005, 1054, 1246
AluI AGCT 8 cut(s) 205, 218, 720, 772, 809, 1005, 1054, 1246
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 1 cut(s) 1139
AoxI GGCC 4 cut(s) 52, 226, 447, 729
ApeKI GCWGC 1 cut(s) 1167
ApoI RAATTY 1 cut(s) 530
Asp700I GAANNNNTTC 1 cut(s) 1124
AspS9I GGNCC 4 cut(s) 227, 367, 493, 695
AsuC2I CCSGG 1 cut(s) 1077
AsuHPI GGTGA 8 cut(s) 100, 301, 853, 970, 1022, 1024, 1213, 1264
AsuII TTCGAA 1 cut(s) 321
AvaII GGWCC 3 cut(s) 367, 493, 695
BalI TGGCCA 1 cut(s) 449
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 2 cut(s) 278, 513
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 1179
BccI CCATC 2 cut(s) 14, 983
BceAI ACGGC 2 cut(s) 39, 40
BciT130I CCWGG 2 cut(s) 62, 702
BclI TGATCA 1 cut(s) 1012
BcnI CCSGG 1 cut(s) 1077
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 1 cut(s) 1055
BfmI CTRYAG 1 cut(s) 1247
BfuAI ACCTGC 2 cut(s) 76, 598
BisI GCNGC 3 cut(s) 36, 729, 1168
BlsI GCNGC 3 cut(s) 37, 730, 1169
Bme1390I CCNGG 3 cut(s) 62, 702, 1077
Bme18I GGWCC 3 cut(s) 367, 493, 695
BmgBI CACGTC 2 cut(s) 745, 1090
BmgT120I GGNCC 4 cut(s) 227, 367, 493, 695
BmiI GGNNCC 3 cut(s) 28, 229, 588
BmrFI CCNGG 3 cut(s) 62, 702, 1077
BmsI GCATC 2 cut(s) 565, 789
BpiI GAAGAC 2 cut(s) 278, 513
BplI GAGNNNNNCTC 2 cut(s) 1156, 1188
Bpu10I CCTNAGC 2 cut(s) 264, 462
Bpu14I TTCGAA 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 482, 1283
BpuMI CCSGG 1 cut(s) 1077
BsaJI CCNNGG 4 cut(s) 60, 582, 732, 1076
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 85, 707, 1184, 1231, 1281
Bse1I ACTGG 1 cut(s) 712
BseBI CCWGG 2 cut(s) 62, 702
BseDI CCNNGG 4 cut(s) 60, 582, 732, 1076
BseGI GGATG 3 cut(s) 75, 556, 1174
BseLI CCNNNNNNNGG 6 cut(s) 61, 85, 707, 1184, 1231, 1281
BseMII CTCAG 2 cut(s) 126, 476
BseNI ACTGG 1 cut(s) 712
BseRI GAGGAG 3 cut(s) 101, 905, 908
BseXI GCAGC 1 cut(s) 1179
BsgI GTGCAG 2 cut(s) 653, 1212
Bsh1236I CGCG 1 cut(s) 882
BshFI GGCC 4 cut(s) 54, 228, 449, 731
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 1076
BslI CCNNNNNNNGG 6 cut(s) 61, 85, 707, 1184, 1231, 1281
BsmAI GTCTC 1 cut(s) 377
BsmBI CGTCTC 1 cut(s) 377
BsnI GGCC 4 cut(s) 54, 228, 449, 731
Bsp119I TTCGAA 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 5 cut(s) 45, 298, 843, 1012, 1131
Bsp19I CCATGG 2 cut(s) 582, 732
BspACI CCGC 9 cut(s) 36, 247, 279, 593, 728, 880, 909, 1185, 1391
BspANI GGCC 4 cut(s) 54, 228, 449, 731
BspCNI CTCAG 2 cut(s) 127, 475
BspFNI CGCG 1 cut(s) 882
BspLI GGNNCC 3 cut(s) 28, 229, 588
BspMI ACCTGC 2 cut(s) 76, 598
BspPI GGATC 1 cut(s) 1139
BspT104I TTCGAA 1 cut(s) 321
BsrI ACTGG 1 cut(s) 712
BssECI CCNNGG 4 cut(s) 60, 582, 732, 1076
BssMI GATC 5 cut(s) 45, 298, 843, 1012, 1131
BssNAI GTATAC 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 582, 732
Bst1107I GTATAC 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 62, 702
Bst4CI ACNGT 2 cut(s) 43, 371
Bst6I CTCTTC 5 cut(s) 136, 150, 1317, 1341, 1380
BstAPI GCANNNNNTGC 1 cut(s) 1235
BstBI TTCGAA 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 1393
BstDEI CTNAG 4 cut(s) 135, 264, 462, 930
BstDSI CCRYGG 2 cut(s) 582, 732
BstEII GGTNACC 1 cut(s) 1219
BstF5I GGATG 3 cut(s) 75, 556, 1174
BstFNI CGCG 1 cut(s) 882
BstKTI GATC 5 cut(s) 48, 301, 846, 1015, 1134
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 5 cut(s) 45, 298, 843, 1012, 1131
BstMWI GCNNNNNNNGC 6 cut(s) 578, 717, 734, 1078, 1235, 1271
BstNI CCWGG 2 cut(s) 62, 702
BstNSI RCATGY 2 cut(s) 103, 1105
BstPI GGTNACC 1 cut(s) 1219
BstSCI CCNGG 3 cut(s) 60, 700, 1075
BstSFI CTRYAG 1 cut(s) 1247
BstUI CGCG 1 cut(s) 882
BstV1I GCAGC 1 cut(s) 1179
BstV2I GAAGAC 2 cut(s) 278, 513
BstX2I RGATCY 1 cut(s) 1131
BstYI RGATCY 1 cut(s) 1131
BstZ17I GTATAC 1 cut(s) 162
BsuRI GGCC 4 cut(s) 54, 228, 449, 731
BtgI CCRYGG 2 cut(s) 582, 732
BtrI CACGTC 2 cut(s) 745, 1090
BtsCI GGATG 3 cut(s) 75, 556, 1174
BtsIMutI CAGTG 2 cut(s) 48, 337
BveI ACCTGC 2 cut(s) 76, 598
Cac8I GCNNGC 1 cut(s) 1393
Cfr13I GGNCC 4 cut(s) 227, 367, 493, 695
CseI GACGC 3 cut(s) 232, 970, 1061
CsiI ACCWGGT 1 cut(s) 700
Csp6I GTAC 2 cut(s) 705, 940
CviAII CATG 7 cut(s) 100, 115, 583, 733, 982, 1102, 1213
CviQI GTAC 2 cut(s) 705, 940
DdeI CTNAG 4 cut(s) 135, 264, 462, 930
DpnI GATC 5 cut(s) 47, 300, 845, 1014, 1133
DpnII GATC 5 cut(s) 45, 298, 843, 1012, 1131
EaeI YGGCCR 3 cut(s) 52, 447, 729
Eam1104I CTCTTC 5 cut(s) 136, 150, 1317, 1341, 1380
EarI CTCTTC 5 cut(s) 136, 150, 1317, 1341, 1380
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 582, 732
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 3 cut(s) 367, 493, 695
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 186, 313
Eco91I GGTNACC 1 cut(s) 1219
EcoICRI GAGCTC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 493
EcoO65I GGTNACC 1 cut(s) 1219
EcoRII CCWGG 2 cut(s) 60, 700
EcoT14I CCWWGG 2 cut(s) 582, 732
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 2 cut(s) 582, 732
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 7 cut(s) 103, 118, 586, 736, 985, 1105, 1216
FatI CATG 7 cut(s) 99, 114, 582, 732, 981, 1101, 1212
FauI CCCGC 2 cut(s) 902, 1384
FbaI TGATCA 1 cut(s) 1012
FblI GTMKAC 2 cut(s) 161, 818
Fnu4HI GCNGC 3 cut(s) 36, 729, 1168
FokI GGATG 3 cut(s) 62, 543, 1161
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 3 cut(s) 36, 729, 1168
FspBI CTAG 1 cut(s) 1055
GluI GCNGC 3 cut(s) 36, 729, 1168
HaeIII GGCC 4 cut(s) 54, 228, 449, 731
HapII CCGG 1 cut(s) 1076
HgaI GACGC 3 cut(s) 232, 970, 1061
Hin1II CATG 7 cut(s) 103, 118, 586, 736, 985, 1105, 1216
HindIII AAGCTT 1 cut(s) 807
HinfI GANTC 5 cut(s) 437, 539, 899, 917, 1020
HpaII CCGG 1 cut(s) 1076
HphI GGTGA 8 cut(s) 100, 301, 853, 970, 1022, 1024, 1213, 1264
Hpy166II GTNNAC 4 cut(s) 162, 698, 748, 819
Hpy188I TCNGA 6 cut(s) 136, 173, 215, 379, 787, 1119
Hpy188III TCNNGA 7 cut(s) 79, 302, 478, 499, 1129, 1160, 1289
Hpy8I GTNNAC 4 cut(s) 162, 698, 748, 819
Hpy99I CGWCG 2 cut(s) 296, 299
HpyAV CCTTC 7 cut(s) 292, 570, 633, 649, 658, 949, 1190
HpyCH4III ACNGT 2 cut(s) 43, 371
HpyCH4IV ACGT 3 cut(s) 198, 744, 1089
HpyCH4V TGCA 7 cut(s) 354, 634, 1064, 1093, 1113, 1229, 1238
HpyF10VI GCNNNNNNNGC 6 cut(s) 578, 717, 734, 1078, 1235, 1271
HpyF3I CTNAG 4 cut(s) 135, 264, 462, 930
HpySE526I ACGT 3 cut(s) 198, 744, 1089
Hsp92II CATG 7 cut(s) 103, 118, 586, 736, 985, 1105, 1216
Ksp22I TGATCA 1 cut(s) 1012
Kzo9I GATC 5 cut(s) 45, 298, 843, 1012, 1131
LmnI GCTCC 3 cut(s) 32, 769, 1243
Lsp1109I GCAGC 1 cut(s) 1179
LweI GCATC 2 cut(s) 565, 789
MabI ACCWGGT 1 cut(s) 700
MaeI CTAG 1 cut(s) 1055
MaeII ACGT 3 cut(s) 198, 744, 1089
MaeIII GTNAC 4 cut(s) 307, 958, 1219, 1256
MalI GATC 5 cut(s) 47, 300, 845, 1014, 1133
MboI GATC 5 cut(s) 45, 298, 843, 1012, 1131
MflI RGATCY 1 cut(s) 1131
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 5 cut(s) 222, 530, 797, 1144, 1191
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 2 cut(s) 431, 1014
MmeI TCCRAC 2 cut(s) 151, 846
Mox20I TGGCCA 1 cut(s) 449
MroXI GAANNNNTTC 1 cut(s) 1124
MscI TGGCCA 1 cut(s) 449
MseI TTAA 1 cut(s) 1278
MslI CAYNNNNRTG 1 cut(s) 753
Msp20I TGGCCA 1 cut(s) 449
MspI CCGG 1 cut(s) 1076
MspR9I CCNGG 3 cut(s) 62, 702, 1077
MvaI CCWGG 2 cut(s) 62, 702
MvnI CGCG 1 cut(s) 882
MwoI GCNNNNNNNGC 6 cut(s) 578, 717, 734, 1078, 1235, 1271
NciI CCSGG 1 cut(s) 1077
NcoI CCATGG 2 cut(s) 582, 732
NdeII GATC 5 cut(s) 45, 298, 843, 1012, 1131
NlaIII CATG 7 cut(s) 103, 118, 586, 736, 985, 1105, 1216
NlaIV GGNNCC 3 cut(s) 28, 229, 588
NmuCI GTSAC 3 cut(s) 307, 958, 1219
NspI RCATGY 2 cut(s) 103, 1105
NspV TTCGAA 1 cut(s) 321
PaqCI CACCTGC 1 cut(s) 76
PciI ACATGT 2 cut(s) 99, 1101
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 1124
PfeI GAWTC 3 cut(s) 539, 899, 917
PkrI GCNGC 3 cut(s) 37, 730, 1169
PleI GAGTC 2 cut(s) 431, 1014
PpsI GAGTC 2 cut(s) 431, 1014
PpuMI RGGWCCY 1 cut(s) 493
PscI ACATGT 2 cut(s) 99, 1101
Psp124BI GAGCTC 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 493
Psp6I CCWGG 2 cut(s) 60, 700
PspEI GGTNACC 1 cut(s) 1219
PspGI CCWGG 2 cut(s) 60, 700
PspN4I GGNNCC 3 cut(s) 28, 229, 588
PspPI GGNCC 4 cut(s) 227, 367, 493, 695
PspPPI RGGWCCY 1 cut(s) 493
PsuI RGATCY 1 cut(s) 1131
RsaI GTAC 2 cut(s) 706, 941
RsaNI GTAC 2 cut(s) 705, 940
RseI CAYNNNNRTG 1 cut(s) 753
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 1278
SatI GCNGC 3 cut(s) 36, 729, 1168
Sau3AI GATC 5 cut(s) 45, 298, 843, 1012, 1131
Sau96I GGNCC 4 cut(s) 227, 367, 493, 695
SchI GAGTC 2 cut(s) 431, 1014
ScrFI CCNGG 3 cut(s) 62, 702, 1077
SduI GDGCHC 1 cut(s) 207
SexAI ACCWGGT 1 cut(s) 700
SfaNI GCATC 2 cut(s) 565, 789
SfcI CTRYAG 1 cut(s) 1247
SfuI TTCGAA 1 cut(s) 321
SinI GGWCC 3 cut(s) 367, 493, 695
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 2 cut(s) 497, 1298
SmoI CTYRAG 2 cut(s) 497, 1298
Sse9I AATT 5 cut(s) 222, 530, 797, 1144, 1191
SsiI CCGC 9 cut(s) 36, 247, 279, 593, 728, 880, 909, 1185, 1391
SspI AATATT 1 cut(s) 549
SspMI CTAG 1 cut(s) 1055
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 3 cut(s) 60, 700, 1075
StyI CCWWGG 2 cut(s) 582, 732
TaaI ACNGT 2 cut(s) 43, 371
TaiI ACGT 3 cut(s) 201, 747, 1092
TaqI TCGA 6 cut(s) 238, 291, 321, 542, 846, 1152
TasI AATT 5 cut(s) 222, 530, 797, 1144, 1191
TatI WGTACW 1 cut(s) 939
TauI GCSGC 2 cut(s) 38, 731
TfiI GAWTC 3 cut(s) 539, 899, 917
Tru1I TTAA 1 cut(s) 1278
Tru9I TTAA 1 cut(s) 1278
TscAI CASTG 2 cut(s) 48, 337
TseFI GTSAC 3 cut(s) 307, 958, 1219
TseI GCWGC 1 cut(s) 1167
Tsp45I GTSAC 3 cut(s) 307, 958, 1219
TspDTI ATGAA 3 cut(s) 396, 1322, 1395
TspRI CASTG 2 cut(s) 48, 337
VpaK11BI GGWCC 3 cut(s) 367, 493, 695
XapI RAATTY 1 cut(s) 530
XceI RCATGY 2 cut(s) 103, 1105
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XmiI GTMKAC 2 cut(s) 161, 818
XmnI GAANNNNTTC 1 cut(s) 1124
XspI CTAG 1 cut(s) 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.