Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011959

Physical Location & Seq

Genomic Coordinates Reverse (-)

15818938 .. 15823551

Gene Structure 4614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2937 bp

ATGGAGTGGAACCCCCAGGACCTCCACACTCTCTCTCAGTGCTTCGTCAACACCCTCTCTCCCTCGCCGGAGCCTCGCCGCCAAGCCGAGGCCATACTCGCCGATTTCTCCCAGAAGCCCAATTACGGCCTCGCCGTGCTCCGTCTCGTCGCCGAGCCCAACGTCGCCGAGGAGATCCGCCAGGCCGCCTCCGTCAACTTCAAGAACCACCTCAAGGCCCGGTGGGCCCCCGCCTCCAACTCCGACGAGCCCAGGATCCTCGACGCCGAGAAGGACCAGATCAAAGCCCTAATCGTCACCCTCATGCTCAACGCCACCCCCAAAATCCAGGGCCAGCTCAGCGAAGCCCTAGTCCTCATCGGCAAGCACGATTTCCCCAGGCTCTGGCCCACTCTGCTCCCCGAGCTCATCGGAAGCCTCCACAAGGCTTCCCAGGCCGGCGACTATGCTTCCGTTAACGGTATTCTCGGCACTGCTAACTCTATTTTTAAGAAATTTCGGTATGAGTACAAGACCAATGATCTTTTGTATGATTTGAAATACTGTTTGGATAATTTCGCTGGAACCCTATTGGAAATTTTCTTGAAAACGGCTAATTTGATTGAGTCTGCCGCCAATGCCGGCGGAGGTAATGCGGCGGCGCTCAAGCCGCTGTTTGAGTCTCAGAGGTTGTGCTGTAGGATTTTCTTCTCGTTGAATTTTCAGGAGTTGCCTGAGTTTTTCGAGGACCATATAAATGAGTGGATGACTGAGCAAAGGAAATATCTAGCCAATAGTTATCCAGCGCTGGAGAATAGTGCTGATGGGCTTGCGGTGGTGGATGAGCTGCGCGCAGCGGTGTGTGAGAATATTAACCTTTATATGGAGAAGAATGAGGAAGAGTTTCAAGCTTACTTGAATGGTTTTGCGCTAGCTGTGTGGAATTTGTTAACAACTGTCTCTCAGGCATCGAACCGTGATCAGCTAGCCGTTACAGCTATTAAGTTCTTGACTACTGTTAGCACAAGTGTGCATCATAATCTGTTTGCTGGTGACGGAGTGATACCCCAGATTTGTCAGGGCATTGTGATCCCGAATGTGAGGTTGAGGGATGAGGATGAGGAACTGTTTGATATGAATTACATTGAGTTCATCAGGAGGGATATGGAAGGCAGTGATCTCGATACTAGGAGGAGGATTGCTTGTGAGCTTCTTAAAGGGATTGCTACCAATTATAAACCACAGGTTACCAACTTGGTTTCTGTACAGATACAGAATTTGCTAACCTCTTTTGCCGCAAACCCATCTGAGAATTGGAAGGATAAGGACTGCGCAATATACTTGGTTGTATCACTTGCTACTAAGAGGGCTGGTGGCACTTCTGTTACGACTGATCTTGTTGATGTTCAGAACTTCTTTGGGACAGTGATTGTTCCGGAACTGCAGAGTCAGGATGTGAATGGATATCCAATGCTTAAGGCGGGCGCATTGAAATTTTTCACAATGTTCCGGAATCATATACCAAAGCCTATGACATTACAATTTTTTCCAGATTTGATTCGGTTCCTTCGTGCAGAGTCCAATGTAGTTCACTCTTATGCTGCAAGTTGTATTGAGAAGCTTTTGCTGGTAAAGGATGAGGGTGGACAAGCAAGATATACTTCAGTAGATATTTCTCCGGTGCTGCCACAACTGATGACCAACCTCTTTGAGGCTTTGAAGGTTCCAGAATCTGAGGAAAATCAATATGTGATGAAGTGTATTATGCGAGTTCTCGGGGTTGCAGACATATCCCGTGAGATTGTTGGACCTTGTATTACTGGGTTGACATCAATACTCAACAAAGCTTGTGAAAACCCCAAGAATCCAGTATTTAACCACTATGTTTTTGAGTCTGTGGCTGTCCTTGTGAAACGAGCATGTGGCAAGGATGCCTCTCTCATATCGATTTTTGAGATAAACCTTTTCCCCAGTATCCAGAAGATACTGGTCGAAGATGTGCAAGAGTTCTATCCTTATGCACTTCAGCTGCTGGCTCAACTTGTTGAGTTGAACAGGCCACCCATTCCACAGAGCTACATGCAGATTTTTCCAATGCTGTTGTCTCCTGACTTGTGGAGAAAGGCTTCCAATGTCCCTGCTCTTGTGCGTTTGCTTCAAGCATTCCTTCAGAAGGCACCCCATGAGCTCAACCAAGAGGGCAGGTTGAGACAGGTCCTTGAGATTTCCAATAAGCTTGTCTCAGCCCGTAGTACTGATGAACAGGGTTTCTATGTGCTAAATACTGTTGTTGAGAGCCTTGATTTTAATGTGATTGCGCCTTACATTGGTCAGATTTGGAGTGCACTTTTCACAGTTCTCCAAAGCAGGCAGACAGGAAAGTTTATCAAGTGTCTATTGATTTTTATGTCACTCTTTCTGGTCAAAAATGGCTCTACAAACCTTGTCGATTCAGTGAATGGCATTCAGGCCAACCTATTTCTGATGATCTTGGGGCAGTTTTGGATACCTAATCTTACGCTTATTACAGGAGTCATTGAGACTAAGTTGACTGCAGTAGCATCAACCCGACTTCTGTGTGAATCTCAAATGCTTCTGGATGCTGCAGCCGTTGAGCACTGGGGGAAACTGCTTAACAGCATTGTAACCCTTCTTTCACGAACAGAGCAGGACAGGGTCGAAGAGGATCCTGAAATGCCTGAATTTTCAGAAAATGTTGGATATTCTGCCACCTTTATTCGGCTGCACAATGCTGGGAAGACTGAGGATGATCCGCTGAAAGATATAAGAGATGCAAAGGAATTTTTGAACTACTTCGTCTCTGCAACTCTTATAACTGCCAAATTGTTTAAGACTTCGTGCGGCTATGAAGATGAGGGCATTTTATCTTCATTGAATCTCCGTCAGCATGCATTTGTGAGCAACCATTACTGTCTCTTAGTCAACGGTTGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005049 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0005911 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0009506 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0030054 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0140104 GO:0140142

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAS_CSE1 Cse1 IBN_N

Protein Analysis

979

Amino Acids

109.73

Weight (kDa)

5.38

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	29 - 103	4.2e-12	Importin-beta N-terminal domain
Cse1	PF08506	162 - 531	7.2e-135	Cse1
CAS_CSE1	PF03378	532 - 933	1.3e-146	CAS/CSE protein, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46520
fragaria_vesca	FvH4_7g16830 FvH4_7g16830
malus_domestica	MD01G1083100.v1.1
prunus_persica	Prupe.2G190300_v2.0.a1 Prupe.2G190300_v2.0.a1 Prupe.2G190300_v2.0.a1 Prupe.2G190300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360031
rosa_laevigata	RLG00000027837
rosa_multiflora	Rmu_co8506667.1_g000001 Rmu_ssc0000368.1_g000034
rosa_roxburghii	Rroxscaffold_4G00296440
rosa_rugosa	Rorug01G0274600
rosa_samantha	Rh1AG288500 Rh1BG254000 Rh1CG271500 Rh1DG283100
rosa_wichuraiana	Rw1G025580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1215, 2813
Acc16I	TGCGCA	1 cut(s)	1312
Acc36I	ACCTGC	1 cut(s)	2172
AccB1I	GGYRCC	1 cut(s)	2155
AccB7I	CCANNNNNTGG	1 cut(s)	384
AccII	CGCG	1 cut(s)	831
AccIII	TCCGGA	2 cut(s)	1414, 1488
AclWI	GGATC	7 cut(s)	169, 250, 263, 1063, 2660, 2673, 2744
AcsI	RAATTY	8 cut(s)	494, 576, 697, 922, 1255, 1472, 2681, 2780
AcuI	CTGAAG	3 cut(s)	1626, 1988, 2132
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	3 cut(s)	509, 1245, 2233
AfeI	AGCGCT	1 cut(s)	786
AflII	CTTAAG	1 cut(s)	1454
AjnI	CCWGG	6 cut(s)	15, 180, 251, 327, 377, 432
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
AleI	CACNNNNGTG	1 cut(s)	1007
Alw21I	GWGCWC	5 cut(s)	141, 408, 2169, 2326, 2598
Alw26I	GTCTC	9 cut(s)	149, 666, 943, 2088, 2182, 2224, 2513, 2803, 2918
Alw44I	GTGCAC	1 cut(s)	2322
AlwI	GGATC	7 cut(s)	169, 250, 263, 1063, 2660, 2673, 2744
AlwNI	CAGNNNCTG	3 cut(s)	384, 1712, 2011
Ama87I	CYCGRG	2 cut(s)	401, 1754
Aor13HI	TCCGGA	2 cut(s)	1414, 1488
Aor51HI	AGCGCT	1 cut(s)	786
ApaI	GGGCCC	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	2322
ApeKI	GCWGC	8 cut(s)	826, 833, 1580, 1663, 2008, 2582, 2585, 2722
ApoI	RAATTY	8 cut(s)	494, 576, 697, 922, 1255, 1472, 2681, 2780
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
Asp700I	GAANNNNTTC	4 cut(s)	882, 1475, 2104, 2792
AspLEI	GCGC	8 cut(s)	643, 787, 831, 833, 910, 1313, 1466, 2299
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	289, 1043
AsuNHI	GCTAGC	2 cut(s)	910, 964
AvaI	CYCGRG	2 cut(s)	401, 1754
AvaII	GGWCC	5 cut(s)	19, 274, 727, 1787, 2194
BaeGI	GKGCMC	2 cut(s)	229, 2326
BamHI	GGATCC	2 cut(s)	255, 2665
BanI	GGYRCC	1 cut(s)	2155
BanII	GRGCYC	5 cut(s)	159, 229, 252, 408, 2169
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BbsI	GAAGAC	1 cut(s)	2744
Bbv12I	GWGCWC	5 cut(s)	141, 408, 2169, 2326, 2598
BbvI	GCAGC	8 cut(s)	813, 845, 1567, 1650, 1995, 2569, 2597, 2709
BccI	CCATC	2 cut(s)	797, 1291
BceAI	ACGGC	5 cut(s)	119, 142, 606, 953, 2573
BcgI	CGANNNNNNTGC	2 cut(s)	1141, 1175
BciT130I	CCWGG	6 cut(s)	17, 182, 253, 329, 379, 434
BciVI	GTATCC	2 cut(s)	1964, 2478
BclI	TGATCA	1 cut(s)	958
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	9 cut(s)	149, 666, 943, 2088, 2182, 2224, 2513, 2803, 2918
BfaI	CTAG	5 cut(s)	350, 767, 911, 965, 1167
BfmI	CTRYAG	4 cut(s)	676, 1421, 2532, 2583
BfoI	RGCGCY	2 cut(s)	644, 788
BfrI	CTTAAG	1 cut(s)	1454
BfuAI	ACCTGC	1 cut(s)	2172
BfuI	GTATCC	2 cut(s)	1964, 2478
BglI	GCCNNNNNGGC	1 cut(s)	224
BlpI	GCTNAGC	1 cut(s)	338
BmcAI	AGTACT	1 cut(s)	2233
Bme1390I	CCNGG	7 cut(s)	17, 182, 220, 253, 329, 379, 434
Bme18I	GGWCC	5 cut(s)	19, 274, 727, 1787, 2194
BmeT110I	CYCGRG	2 cut(s)	401, 1754
BmrFI	CCNGG	7 cut(s)	17, 182, 220, 253, 329, 379, 434
BmrI	ACTGGG	3 cut(s)	1809, 1944, 2608
BmsI	GCATC	6 cut(s)	956, 1021, 1900, 2549, 2569, 2761
BmtI	GCTAGC	2 cut(s)	914, 968
BmuI	ACTGGG	3 cut(s)	1809, 1944, 2608
BpiI	GAAGAC	1 cut(s)	2744
BpmI	CTGGAG	1 cut(s)	809
Bpu1102I	GCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	3 cut(s)	197, 629, 2219
BpuMI	CCSGG	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	1925
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	7 cut(s)	15, 87, 168, 251, 328, 377, 432
BsaWI	WCCGGW	3 cut(s)	1414, 1488, 1657
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bse118I	RCCGGY	2 cut(s)	437, 620
Bse1I	ACTGG	5 cut(s)	1804, 1847, 1950, 1971, 2603
BseAI	TCCGGA	2 cut(s)	1414, 1488
BseBI	CCWGG	6 cut(s)	17, 182, 253, 329, 379, 434
BseCI	ATCGAT	1 cut(s)	1925
BseDI	CCNNGG	7 cut(s)	15, 87, 168, 251, 328, 377, 432
BseGI	GGATG	9 cut(s)	750, 826, 1096, 1102, 1438, 1621, 1915, 2584, 2752
BseNI	ACTGG	5 cut(s)	1804, 1847, 1950, 1971, 2603
BsePI	GCGCGC	1 cut(s)	829
BseRI	GAGGAG	2 cut(s)	185, 1186
BseSI	GKGCMC	2 cut(s)	229, 2326
BseXI	GCAGC	8 cut(s)	813, 845, 1567, 1650, 1995, 2569, 2597, 2709
BseYI	CCCAGC	1 cut(s)	2732
BsgI	GTGCAG	2 cut(s)	1572, 2708
Bsh1236I	CGCG	1 cut(s)	831
BshNI	GGYRCC	1 cut(s)	2155
BshVI	ATCGAT	1 cut(s)	1925
BsiHKAI	GWGCWC	5 cut(s)	141, 408, 2169, 2326, 2598
BsiHKCI	CYCGRG	2 cut(s)	401, 1754
BsiSI	CCGG	7 cut(s)	68, 220, 438, 621, 1415, 1489, 1658
BslFI	GGGAC	2 cut(s)	1414, 2099
BsmAI	GTCTC	9 cut(s)	149, 666, 943, 2088, 2182, 2224, 2513, 2803, 2918
BsmBI	CGTCTC	2 cut(s)	149, 2803
BsmFI	GGGAC	2 cut(s)	1414, 2099
BsmI	GAATGC	2 cut(s)	2141, 2442
BsoBI	CYCGRG	2 cut(s)	401, 1754
Bsp120I	GGGCCC	1 cut(s)	225
Bsp1286I	GDGCHC	8 cut(s)	141, 159, 229, 252, 408, 2169, 2326, 2598
Bsp13I	TCCGGA	2 cut(s)	1414, 1488
Bsp1407I	TGTACA	1 cut(s)	1243
Bsp1720I	GCTNAGC	1 cut(s)	338
BspDI	ATCGAT	1 cut(s)	1925
BspEI	TCCGGA	2 cut(s)	1414, 1488
BspFNI	CGCG	1 cut(s)	831
BspMAI	CTGCAG	3 cut(s)	1425, 2536, 2587
BspMI	ACCTGC	1 cut(s)	2172
BspOI	GCTAGC	2 cut(s)	914, 968
BspPI	GGATC	7 cut(s)	169, 250, 263, 1063, 2660, 2673, 2744
BspT107I	GGYRCC	1 cut(s)	2155
BspTI	CTTAAG	1 cut(s)	1454
BsrFI	RCCGGY	2 cut(s)	437, 620
BsrGI	TGTACA	1 cut(s)	1243
BsrI	ACTGG	5 cut(s)	1804, 1847, 1950, 1971, 2603
BssAI	RCCGGY	2 cut(s)	437, 620
BssECI	CCNNGG	7 cut(s)	15, 87, 168, 251, 328, 377, 432
BssHII	GCGCGC	1 cut(s)	829
BssNI	GRCGYC	1 cut(s)	264
Bst2UI	CCWGG	6 cut(s)	17, 182, 253, 329, 379, 434
Bst6I	CTCTTC	2 cut(s)	873, 2655
BstACI	GRCGYC	1 cut(s)	264
BstAFI	CTTAAG	1 cut(s)	1454
BstAUI	TGTACA	1 cut(s)	1243
BstEII	GGTNACC	1 cut(s)	1225
BstENI	CCTNNNNNAGG	3 cut(s)	422, 1688, 2150
BstF5I	GGATG	9 cut(s)	750, 826, 1096, 1102, 1438, 1621, 1915, 2584, 2752
BstFNI	CGCG	1 cut(s)	831
BstH2I	RGCGCY	2 cut(s)	644, 788
BstHHI	GCGC	8 cut(s)	643, 787, 831, 833, 910, 1313, 1466, 2299
BstMAI	GTCTC	9 cut(s)	149, 666, 943, 2088, 2182, 2224, 2513, 2803, 2918
BstMWI	GCNNNNNNNGC	9 cut(s)	98, 224, 339, 394, 403, 434, 617, 649, 974
BstNI	CCWGG	6 cut(s)	17, 182, 253, 329, 379, 434
BstNSI	RCATGY	3 cut(s)	1902, 2062, 2891
BstPI	GGTNACC	1 cut(s)	1225
BstSCI	CCNGG	7 cut(s)	15, 180, 218, 251, 327, 377, 432
BstSFI	CTRYAG	4 cut(s)	676, 1421, 2532, 2583
BstSLI	GKGCMC	2 cut(s)	229, 2326
BstUI	CGCG	1 cut(s)	831
BstV1I	GCAGC	8 cut(s)	813, 845, 1567, 1650, 1995, 2569, 2597, 2709
BstV2I	GAAGAC	1 cut(s)	2744
BstX2I	RGATCY	3 cut(s)	174, 255, 2665
BstYI	RGATCY	3 cut(s)	174, 255, 2665
Bsu15I	ATCGAT	1 cut(s)	1925
BsuI	GTATCC	2 cut(s)	1964, 2478
BsuTUI	ATCGAT	1 cut(s)	1925
BtsCI	GGATG	9 cut(s)	750, 826, 1096, 1102, 1438, 1621, 1915, 2584, 2752
BtsI	GCAGTG	2 cut(s)	471, 1159
BtsIMutI	CAGTG	6 cut(s)	44, 471, 1159, 1410, 2439, 2596
BveI	ACCTGC	1 cut(s)	2172
CaiI	CAGNNNCTG	3 cut(s)	384, 1712, 2011
CfoI	GCGC	8 cut(s)	643, 787, 831, 833, 910, 1313, 1466, 2299
Cfr10I	RCCGGY	2 cut(s)	437, 620
ClaI	ATCGAT	1 cut(s)	1925
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	508, 1244, 2232
CviAII	CATG	5 cut(s)	304, 1899, 2059, 2162, 2888
CviQI	GTAC	3 cut(s)	508, 1244, 2232
Eam1104I	CTCTTC	2 cut(s)	873, 2655
EarI	CTCTTC	2 cut(s)	873, 2655
EciI	GGCGGA	2 cut(s)	167, 639
Ecl136II	GAGCTC	2 cut(s)	406, 2167
Eco24I	GRGCYC	5 cut(s)	159, 229, 252, 408, 2169
Eco32I	GATATC	1 cut(s)	1445
Eco47I	GGWCC	5 cut(s)	19, 274, 727, 1787, 2194
Eco47III	AGCGCT	1 cut(s)	786
Eco53kI	GAGCTC	2 cut(s)	406, 2167
Eco57I	CTGAAG	3 cut(s)	1626, 1988, 2132
Eco88I	CYCGRG	2 cut(s)	401, 1754
Eco91I	GGTNACC	1 cut(s)	1225
EcoICRI	GAGCTC	2 cut(s)	406, 2167
EcoNI	CCTNNNNNAGG	3 cut(s)	422, 1688, 2150
EcoO109I	RGGNCCY	3 cut(s)	19, 226, 2194
EcoO65I	GGTNACC	1 cut(s)	1225
EcoRII	CCWGG	6 cut(s)	15, 180, 251, 327, 377, 432
EcoRV	GATATC	1 cut(s)	1445
EcoT22I	ATGCAT	1 cut(s)	2893
EcoT38I	GRGCYC	5 cut(s)	159, 229, 252, 408, 2169
Esp3I	CGTCTC	2 cut(s)	149, 2803
FaeI	CATG	5 cut(s)	307, 1902, 2062, 2165, 2891
FalI	AAGNNNNNCTT	4 cut(s)	1624, 1656, 2130, 2162
FaqI	GGGAC	2 cut(s)	1414, 2099
FatI	CATG	5 cut(s)	303, 1898, 2058, 2161, 2887
FauI	CCCGC	2 cut(s)	238, 1453
FbaI	TGATCA	1 cut(s)	958
FokI	GGATG	9 cut(s)	757, 833, 1103, 1109, 1445, 1628, 1922, 2591, 2759
FriOI	GRGCYC	5 cut(s)	159, 229, 252, 408, 2169
FspBI	CTAG	5 cut(s)	350, 767, 911, 965, 1167
FspI	TGCGCA	1 cut(s)	1312
GlaI	GCGC	8 cut(s)	642, 786, 830, 832, 909, 1312, 1465, 2298
GsaI	CCCAGC	1 cut(s)	2736
GsuI	CTGGAG	1 cut(s)	809
HaeII	RGCGCY	2 cut(s)	644, 788
HapII	CCGG	7 cut(s)	68, 220, 438, 621, 1415, 1489, 1658
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	8 cut(s)	643, 787, 831, 833, 910, 1313, 1466, 2299
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	5 cut(s)	307, 1902, 2062, 2165, 2891
Hin6I	GCGC	8 cut(s)	641, 785, 829, 831, 908, 1311, 1464, 2297
HinP1I	GCGC	8 cut(s)	641, 785, 829, 831, 908, 1311, 1464, 2297
HincII	GTYRAC	7 cut(s)	49, 196, 457, 930, 1806, 2529, 2923
HindII	GTYRAC	7 cut(s)	49, 196, 457, 930, 1806, 2529, 2923
HindIII	AAGCTT	4 cut(s)	888, 1598, 1824, 2213
HpaI	GTTAAC	2 cut(s)	457, 930
HpaII	CCGG	7 cut(s)	68, 220, 438, 621, 1415, 1489, 1658
HphI	GGTGA	2 cut(s)	289, 1043
Hpy99I	CGWCG	4 cut(s)	152, 167, 248, 266
HpyAV	CCTTC	8 cut(s)	265, 1142, 1291, 1556, 1693, 2146, 2156, 2639
HpyCH4IV	ACGT	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	9 cut(s)	98, 224, 339, 394, 403, 434, 617, 649, 974
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	5 cut(s)	307, 1902, 2062, 2165, 2891
HspAI	GCGC	8 cut(s)	641, 785, 829, 831, 908, 1311, 1464, 2297
Kpn2I	TCCGGA	2 cut(s)	1414, 1488
KroI	GCCGGC	2 cut(s)	437, 620
KroNI	GCCGGC	2 cut(s)	439, 622
Ksp22I	TGATCA	1 cut(s)	958
KspAI	GTTAAC	2 cut(s)	457, 930
LmnI	GCTCC	3 cut(s)	70, 144, 402
Lsp1109I	GCAGC	8 cut(s)	813, 845, 1567, 1650, 1995, 2569, 2597, 2709
LweI	GCATC	6 cut(s)	956, 1021, 1900, 2549, 2569, 2761
MaeI	CTAG	5 cut(s)	350, 767, 911, 965, 1167
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	7 cut(s)	295, 970, 1031, 1225, 1363, 2388, 2623
MboII	GAAGA	9 cut(s)	679, 880, 890, 1972, 1985, 2672, 2749, 2859, 2861
MflI	RGATCY	3 cut(s)	174, 255, 2665
MhlI	GDGCHC	8 cut(s)	141, 159, 229, 252, 408, 2169, 2326, 2598
MlyI	GAGTC	6 cut(s)	614, 668, 1435, 1565, 1880, 2520
MmeI	TCCRAC	4 cut(s)	261, 267, 1765, 2677
Mph1103I	ATGCAT	1 cut(s)	2893
MroI	TCCGGA	2 cut(s)	1414, 1488
MroNI	GCCGGC	2 cut(s)	437, 620
MroXI	GAANNNNTTC	4 cut(s)	882, 1475, 2104, 2792
MslI	CAYNNNNRTG	4 cut(s)	302, 735, 1007, 1575
MspA1I	CMGCKG	4 cut(s)	652, 836, 2008, 2755
MspCI	CTTAAG	1 cut(s)	1454
MspI	CCGG	7 cut(s)	68, 220, 438, 621, 1415, 1489, 1658
MspR9I	CCNGG	7 cut(s)	17, 182, 220, 253, 329, 379, 434
Mva1269I	GAATGC	2 cut(s)	2141, 2442
MvaI	CCWGG	6 cut(s)	17, 182, 253, 329, 379, 434
MvnI	CGCG	1 cut(s)	831
MwoI	GCNNNNNNNGC	9 cut(s)	98, 224, 339, 394, 403, 434, 617, 649, 974
NaeI	GCCGGC	2 cut(s)	439, 622
NciI	CCSGG	1 cut(s)	220
NgoMIV	GCCGGC	2 cut(s)	437, 620
NheI	GCTAGC	2 cut(s)	910, 964
NlaIII	CATG	5 cut(s)	307, 1902, 2062, 2165, 2891
NmeAIII	GCCGAG	5 cut(s)	112, 178, 193, 292, 447
NmuCI	GTSAC	3 cut(s)	295, 1031, 2388
NsbI	TGCGCA	1 cut(s)	1312
NsiI	ATGCAT	1 cut(s)	2893
NspI	RCATGY	3 cut(s)	1902, 2062, 2891
OliI	CACNNNNGTG	1 cut(s)	1007
PaeI	GCATGC	1 cut(s)	2891
PauI	GCGCGC	1 cut(s)	829
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 366, 1546
PctI	GAATGC	2 cut(s)	2141, 2442
PdiI	GCCGGC	2 cut(s)	439, 622
PdmI	GAANNNNTTC	4 cut(s)	882, 1475, 2104, 2792
PfeI	GAWTC	7 cut(s)	1492, 1537, 1709, 1843, 2429, 2561, 2875
PflFI	GACNNNGTC	1 cut(s)	2654
PflMI	CCANNNNNTGG	1 cut(s)	384
PleI	GAGTC	6 cut(s)	613, 667, 1434, 1564, 1879, 2519
PpsI	GAGTC	6 cut(s)	613, 667, 1434, 1564, 1879, 2519
PpuMI	RGGWCCY	2 cut(s)	19, 2194
PsiI	TTATAA	2 cut(s)	1215, 2813
Psp124BI	GAGCTC	2 cut(s)	408, 2169
Psp5II	RGGWCCY	2 cut(s)	19, 2194
Psp6I	CCWGG	6 cut(s)	15, 180, 251, 327, 377, 432
PspEI	GGTNACC	1 cut(s)	1225
PspFI	CCCAGC	1 cut(s)	2732
PspGI	CCWGG	6 cut(s)	15, 180, 251, 327, 377, 432
PspOMI	GGGCCC	1 cut(s)	225
PspPPI	RGGWCCY	2 cut(s)	19, 2194
PstI	CTGCAG	3 cut(s)	1425, 2536, 2587
PstNI	CAGNNNCTG	3 cut(s)	384, 1712, 2011
PsuI	RGATCY	3 cut(s)	174, 255, 2665
PsyI	GACNNNGTC	1 cut(s)	2654
PteI	GCGCGC	1 cut(s)	829
PvuII	CAGCTG	1 cut(s)	2008
RsaI	GTAC	3 cut(s)	509, 1245, 2233
RsaNI	GTAC	3 cut(s)	508, 1244, 2232
RseI	CAYNNNNRTG	4 cut(s)	302, 735, 1007, 1575
SacI	GAGCTC	2 cut(s)	408, 2169
ScaI	AGTACT	1 cut(s)	2233
SchI	GAGTC	6 cut(s)	614, 668, 1435, 1565, 1880, 2520
ScrFI	CCNGG	7 cut(s)	17, 182, 220, 253, 329, 379, 434
SduI	GDGCHC	8 cut(s)	141, 159, 229, 252, 408, 2169, 2326, 2598
SfaNI	GCATC	6 cut(s)	956, 1021, 1900, 2549, 2569, 2761
SfcI	CTRYAG	4 cut(s)	676, 1421, 2532, 2583
SfiI	GGCCNNNNNGGCC	1 cut(s)	224
SinI	GGWCC	5 cut(s)	19, 274, 727, 1787, 2194
SmiMI	CAYNNNNRTG	4 cut(s)	302, 735, 1007, 1575
SmlI	CTYRAG	4 cut(s)	212, 644, 1454, 2198
SmoI	CTYRAG	4 cut(s)	212, 644, 1454, 2198
SphI	GCATGC	1 cut(s)	2891
SspI	AATATT	1 cut(s)	850
SspMI	CTAG	5 cut(s)	350, 767, 911, 965, 1167
SstI	GAGCTC	2 cut(s)	408, 2169
StyD4I	CCNGG	7 cut(s)	15, 180, 218, 251, 327, 377, 432
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	8 cut(s)	261, 723, 950, 1161, 1925, 1971, 2427, 2658
TatI	WGTACW	3 cut(s)	507, 1243, 2231
TauI	GCSGC	8 cut(s)	81, 188, 614, 638, 641, 652, 1277, 2844
TfiI	GAWTC	7 cut(s)	1492, 1537, 1709, 1843, 2429, 2561, 2875
TscAI	CASTG	6 cut(s)	44, 478, 1159, 1410, 2439, 2603
TseFI	GTSAC	3 cut(s)	295, 1031, 2388
TseI	GCWGC	8 cut(s)	826, 833, 1580, 1663, 2008, 2582, 2585, 2722
Tsp45I	GTSAC	3 cut(s)	295, 1031, 2388
TspDTI	ATGAA	6 cut(s)	1120, 1130, 1748, 2253, 2859, 2862
TspGWI	ACGGA	5 cut(s)	131, 181, 442, 1050, 2870
TspRI	CASTG	6 cut(s)	44, 478, 1159, 1410, 2439, 2603
Tth111I	GACNNNGTC	1 cut(s)	2654
Van91I	CCANNNNNTGG	1 cut(s)	384
Vha464I	CTTAAG	1 cut(s)	1454
VneI	GTGCAC	1 cut(s)	2322
VpaK11BI	GGWCC	5 cut(s)	19, 274, 727, 1787, 2194
XagI	CCTNNNNNAGG	3 cut(s)	422, 1688, 2150
XapI	RAATTY	8 cut(s)	494, 576, 697, 922, 1255, 1472, 2681, 2780
XceI	RCATGY	3 cut(s)	1902, 2062, 2891
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1290
XmnI	GAANNNNTTC	4 cut(s)	882, 1475, 2104, 2792
XspI	CTAG	5 cut(s)	350, 767, 911, 965, 1167
ZrmI	AGTACT	1 cut(s)	2233
Zsp2I	ATGCAT	1 cut(s)	2893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.