Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G46530 AT2G46530 AT2G46530 AT3G61830 AT3G61830 |
| fragaria_vesca | FvH4_7g16840 FvH4_7g16840 FvH4_7g16840 FvH4_7g16840 FvH4_7g16840 FvH4_7g16840 |
| malus_domestica | MD01G1083400.v1.1 MD07G1152100.v1.1 |
| prunus_persica | Prupe.2G190400_v2.0.a1 Prupe.2G190400_v2.0.a1 Prupe.2G190400_v2.0.a1 |
| pyrus_communis | pycom07g15010 |
| rosa_chinensis | RchiOBHm_Chr1g0360041 |
| rosa_laevigata | RLG00000027836 |
| rosa_multiflora | Rmu_ssc0000368.1_g000035 |
| rosa_roxburghii | Rroxscaffold_4G00296430 |
| rosa_rugosa | Rorug01G0274600 |
| rosa_samantha | Rh1AG288600 Rh1BG254100 Rh1CG271600 Rh1DG283200 |
| rosa_wichuraiana | Rw1G025590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 202 |
| AciI | CCGC | 3 cut(s) | 233, 277, 442 |
| AclWI | GGATC | 1 cut(s) | 453 |
| AcuI | CTGAAG | 3 cut(s) | 57, 492, 604 |
| AdeI | CACNNNGTG | 1 cut(s) | 285 |
| AgsI | TTSAA | 2 cut(s) | 118, 307 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 452, 484 |
| AluBI | AGCT | 7 cut(s) | 19, 25, 41, 59, 100, 273, 365 |
| AluI | AGCT | 7 cut(s) | 19, 25, 41, 59, 100, 273, 365 |
| Alw21I | GWGCWC | 5 cut(s) | 21, 102, 242, 266, 594 |
| Alw26I | GTCTC | 1 cut(s) | 181 |
| AlwI | GGATC | 1 cut(s) | 453 |
| Aor13HI | TCCGGA | 1 cut(s) | 202 |
| ApeKI | GCWGC | 2 cut(s) | 273, 424 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 452, 484 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 42 |
| AspA2I | CCTAGG | 1 cut(s) | 463 |
| AspS9I | GGNCC | 2 cut(s) | 166, 460 |
| AsuC2I | CCSGG | 1 cut(s) | 596 |
| AsuHPI | GGTGA | 1 cut(s) | 365 |
| AvaII | GGWCC | 2 cut(s) | 166, 460 |
| AvrII | CCTAGG | 1 cut(s) | 463 |
| BanII | GRGCYC | 2 cut(s) | 21, 102 |
| BbsI | GAAGAC | 3 cut(s) | 61, 498, 610 |
| Bbv12I | GWGCWC | 5 cut(s) | 21, 102, 242, 266, 594 |
| BbvI | GCAGC | 2 cut(s) | 260, 411 |
| BccI | CCATC | 2 cut(s) | 451, 607 |
| BceAI | ACGGC | 2 cut(s) | 220, 418 |
| BcnI | CCSGG | 1 cut(s) | 596 |
| BcoDI | GTCTC | 1 cut(s) | 181 |
| BfaI | CTAG | 1 cut(s) | 464 |
| BisI | GCNGC | 4 cut(s) | 233, 274, 277, 425 |
| BlnI | CCTAGG | 1 cut(s) | 463 |
| BlsI | GCNGC | 4 cut(s) | 234, 275, 278, 426 |
| Bme1390I | CCNGG | 1 cut(s) | 596 |
| Bme18I | GGWCC | 2 cut(s) | 166, 460 |
| BmgT120I | GGNCC | 2 cut(s) | 166, 460 |
| BmrFI | CCNGG | 1 cut(s) | 596 |
| BmsI | GCATC | 1 cut(s) | 414 |
| BoxI | GACNNNNGTC | 1 cut(s) | 164 |
| BpiI | GAAGAC | 3 cut(s) | 61, 498, 610 |
| BpuEI | CTTGAG | 2 cut(s) | 5, 35 |
| BpuMI | CCSGG | 1 cut(s) | 596 |
| BsaI | GGTCTC | 1 cut(s) | 181 |
| BsaJI | CCNNGG | 2 cut(s) | 162, 463 |
| BsaWI | WCCGGW | 1 cut(s) | 202 |
| Bse1I | ACTGG | 3 cut(s) | 177, 321, 428 |
| Bse3DI | GCAATG | 1 cut(s) | 437 |
| BseAI | TCCGGA | 1 cut(s) | 202 |
| BseDI | CCNNGG | 2 cut(s) | 162, 463 |
| BseGI | GGATG | 2 cut(s) | 126, 400 |
| BseMI | GCAATG | 1 cut(s) | 437 |
| BseMII | CTCAG | 2 cut(s) | 89, 321 |
| BseNI | ACTGG | 3 cut(s) | 177, 321, 428 |
| BseRI | GAGGAG | 2 cut(s) | 232, 406 |
| BseXI | GCAGC | 2 cut(s) | 260, 411 |
| BsgI | GTGCAG | 1 cut(s) | 281 |
| BsiHKAI | GWGCWC | 5 cut(s) | 21, 102, 242, 266, 594 |
| BsiSI | CCGG | 2 cut(s) | 203, 595 |
| BsmAI | GTCTC | 1 cut(s) | 181 |
| Bso31I | GGTCTC | 1 cut(s) | 181 |
| Bsp1286I | GDGCHC | 5 cut(s) | 21, 102, 242, 266, 594 |
| Bsp13I | TCCGGA | 1 cut(s) | 202 |
| Bsp143I | GATC | 1 cut(s) | 445 |
| Bsp19I | CCATGG | 1 cut(s) | 162 |
| BspACI | CCGC | 3 cut(s) | 233, 277, 442 |
| BspCNI | CTCAG | 2 cut(s) | 88, 322 |
| BspEI | TCCGGA | 1 cut(s) | 202 |
| BspPI | GGATC | 1 cut(s) | 453 |
| BspTNI | GGTCTC | 1 cut(s) | 181 |
| BsrDI | GCAATG | 1 cut(s) | 437 |
| BsrI | ACTGG | 3 cut(s) | 177, 321, 428 |
| BssECI | CCNNGG | 2 cut(s) | 162, 463 |
| BssMI | GATC | 1 cut(s) | 445 |
| BssT1I | CCWWGG | 2 cut(s) | 162, 463 |
| Bst4CI | ACNGT | 2 cut(s) | 9, 217 |
| BstC8I | GCNNGC | 2 cut(s) | 222, 281 |
| BstDEI | CTNAG | 2 cut(s) | 75, 330 |
| BstDSI | CCRYGG | 1 cut(s) | 162 |
| BstF5I | GGATG | 2 cut(s) | 126, 400 |
| BstKTI | GATC | 1 cut(s) | 448 |
| BstMAI | GTCTC | 1 cut(s) | 181 |
| BstMBI | GATC | 1 cut(s) | 445 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 270 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 164 |
| BstSCI | CCNGG | 1 cut(s) | 594 |
| BstV1I | GCAGC | 2 cut(s) | 260, 411 |
| BstV2I | GAAGAC | 3 cut(s) | 61, 498, 610 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 220 |
| BtgI | CCRYGG | 1 cut(s) | 162 |
| BtgZI | GCGATG | 1 cut(s) | 239 |
| BtsCI | GGATG | 2 cut(s) | 126, 400 |
| BtsIMutI | CAGTG | 3 cut(s) | 213, 327, 435 |
| Cac8I | GCNNGC | 2 cut(s) | 222, 281 |
| Cfr13I | GGNCC | 2 cut(s) | 166, 460 |
| CviAII | CATG | 4 cut(s) | 112, 163, 548, 563 |
| DdeI | CTNAG | 2 cut(s) | 75, 330 |
| DpnI | GATC | 1 cut(s) | 447 |
| DpnII | GATC | 1 cut(s) | 445 |
| DraI | TTTAAA | 1 cut(s) | 556 |
| DraIII | CACNNNGTG | 1 cut(s) | 285 |
| Ecl136II | GAGCTC | 2 cut(s) | 19, 100 |
| Eco130I | CCWWGG | 2 cut(s) | 162, 463 |
| Eco24I | GRGCYC | 2 cut(s) | 21, 102 |
| Eco31I | GGTCTC | 1 cut(s) | 181 |
| Eco47I | GGWCC | 2 cut(s) | 166, 460 |
| Eco53kI | GAGCTC | 2 cut(s) | 19, 100 |
| Eco57I | CTGAAG | 3 cut(s) | 57, 492, 604 |
| EcoICRI | GAGCTC | 2 cut(s) | 19, 100 |
| EcoT14I | CCWWGG | 2 cut(s) | 162, 463 |
| EcoT38I | GRGCYC | 2 cut(s) | 21, 102 |
| ErhI | CCWWGG | 2 cut(s) | 162, 463 |
| FaeI | CATG | 4 cut(s) | 115, 166, 551, 566 |
| FaiI | YATR | 8 cut(s) | 113, 164, 351, 384, 480, 549, 564, 634 |
| FatI | CATG | 4 cut(s) | 111, 162, 547, 562 |
| FauI | CCCGC | 1 cut(s) | 435 |
| Fnu4HI | GCNGC | 4 cut(s) | 233, 274, 277, 425 |
| FokI | GGATG | 2 cut(s) | 113, 407 |
| FriOI | GRGCYC | 2 cut(s) | 21, 102 |
| Fsp4HI | GCNGC | 4 cut(s) | 233, 274, 277, 425 |
| FspBI | CTAG | 1 cut(s) | 464 |
| GluI | GCNGC | 4 cut(s) | 233, 274, 277, 425 |
| HapII | CCGG | 2 cut(s) | 203, 595 |
| Hin1II | CATG | 4 cut(s) | 115, 166, 551, 566 |
| HindIII | AAGCTT | 1 cut(s) | 23 |
| HinfI | GANTC | 4 cut(s) | 66, 335, 451, 542 |
| HpaII | CCGG | 2 cut(s) | 203, 595 |
| HphI | GGTGA | 1 cut(s) | 365 |
| Hpy188I | TCNGA | 7 cut(s) | 91, 159, 450, 456, 511, 541, 623 |
| Hpy188III | TCNNGA | 4 cut(s) | 35, 52, 203, 252 |
| HpyCH4III | ACNGT | 2 cut(s) | 9, 217 |
| HpyCH4V | TGCA | 1 cut(s) | 298 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 270 |
| HpyF3I | CTNAG | 2 cut(s) | 75, 330 |
| Hsp92II | CATG | 4 cut(s) | 115, 166, 551, 566 |
| Kpn2I | TCCGGA | 1 cut(s) | 202 |
| Kzo9I | GATC | 1 cut(s) | 445 |
| LmnI | GCTCC | 5 cut(s) | 105, 245, 269, 362, 597 |
| Lsp1109I | GCAGC | 2 cut(s) | 260, 411 |
| LweI | GCATC | 1 cut(s) | 414 |
| MaeI | CTAG | 1 cut(s) | 464 |
| MaeIII | GTNAC | 3 cut(s) | 3, 340, 573 |
| MalI | GATC | 1 cut(s) | 447 |
| MboI | GATC | 1 cut(s) | 445 |
| MboII | GAAGA | 3 cut(s) | 61, 498, 610 |
| MhlI | GDGCHC | 5 cut(s) | 21, 102, 242, 266, 594 |
| MlyI | GAGTC | 1 cut(s) | 75 |
| MmeI | TCCRAC | 1 cut(s) | 182 |
| MnlI | CCTC | 7 cut(s) | 155, 253, 325, 352, 427, 486, 622 |
| MroI | TCCGGA | 1 cut(s) | 202 |
| MroXI | GAANNNNTTC | 1 cut(s) | 42 |
| MseI | TTAA | 1 cut(s) | 555 |
| MslI | CAYNNNNRTG | 1 cut(s) | 110 |
| MspI | CCGG | 2 cut(s) | 203, 595 |
| MspR9I | CCNGG | 1 cut(s) | 596 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 270 |
| NciI | CCSGG | 1 cut(s) | 596 |
| NcoI | CCATGG | 1 cut(s) | 162 |
| NdeII | GATC | 1 cut(s) | 445 |
| NlaIII | CATG | 4 cut(s) | 115, 166, 551, 566 |
| NmuCI | GTSAC | 2 cut(s) | 3, 573 |
| PdmI | GAANNNNTTC | 1 cut(s) | 42 |
| PfeI | GAWTC | 3 cut(s) | 335, 451, 542 |
| PkrI | GCNGC | 4 cut(s) | 234, 275, 278, 426 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| PshAI | GACNNNNGTC | 1 cut(s) | 164 |
| Psp124BI | GAGCTC | 2 cut(s) | 21, 102 |
| PspPI | GGNCC | 2 cut(s) | 166, 460 |
| RseI | CAYNNNNRTG | 1 cut(s) | 110 |
| SacI | GAGCTC | 2 cut(s) | 21, 102 |
| SaqAI | TTAA | 1 cut(s) | 555 |
| SatI | GCNGC | 4 cut(s) | 233, 274, 277, 425 |
| Sau3AI | GATC | 1 cut(s) | 445 |
| Sau96I | GGNCC | 2 cut(s) | 166, 460 |
| SchI | GAGTC | 1 cut(s) | 75 |
| ScrFI | CCNGG | 1 cut(s) | 596 |
| SduI | GDGCHC | 5 cut(s) | 21, 102, 242, 266, 594 |
| SfaNI | GCATC | 1 cut(s) | 414 |
| SinI | GGWCC | 2 cut(s) | 166, 460 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 110 |
| SmlI | CTYRAG | 2 cut(s) | 20, 50 |
| SmoI | CTYRAG | 2 cut(s) | 20, 50 |
| SsiI | CCGC | 3 cut(s) | 233, 277, 442 |
| SspMI | CTAG | 1 cut(s) | 464 |
| SstI | GAGCTC | 2 cut(s) | 21, 102 |
| StyD4I | CCNGG | 1 cut(s) | 594 |
| StyI | CCWWGG | 2 cut(s) | 162, 463 |
| TaaI | ACNGT | 2 cut(s) | 9, 217 |
| TaqI | TCGA | 1 cut(s) | 251 |
| TaqII | GACCGA | 1 cut(s) | 108 |
| TauI | GCSGC | 2 cut(s) | 235, 279 |
| TfiI | GAWTC | 3 cut(s) | 335, 451, 542 |
| Tru1I | TTAA | 1 cut(s) | 555 |
| Tru9I | TTAA | 1 cut(s) | 555 |
| TscAI | CASTG | 3 cut(s) | 220, 334, 435 |
| TseFI | GTSAC | 2 cut(s) | 3, 573 |
| TseI | GCWGC | 2 cut(s) | 273, 424 |
| Tsp45I | GTSAC | 2 cut(s) | 3, 573 |
| TspDTI | ATGAA | 4 cut(s) | 242, 426, 495, 551 |
| TspGWI | ACGGA | 1 cut(s) | 235 |
| TspRI | CASTG | 3 cut(s) | 220, 334, 435 |
| VpaK11BI | GGWCC | 2 cut(s) | 166, 460 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 169 |
| XmaJI | CCTAGG | 1 cut(s) | 463 |
| XmnI | GAANNNNTTC | 1 cut(s) | 42 |
| XspI | CTAG | 1 cut(s) | 464 |