AT3G61830

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
22887889 .. 22891455
3567 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61830.2

Sequence Viewer

Length: 1809 bp
ATGGCGAGTGTTGAAGGTGATGATGATTTCGGAAGTTCTTCGTCAAGGTCTTATCAAGATCAACTATACACAGAGCTATGGAAAGTTTGTGCAGGTCCATTAGTGGAAGTTCCTCGTGCTCAAGAGAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTTGTGGCGTCAACTAATCAAGGAATCAATTCAGAAGAAATACCTGTTTTTGATCTTCCTCCAAAGATACTTTGTCGAGTTCTTGATGTCACTTTAAAGGCGGAGCATGAAACAGATGAGGTTTACGCTCAGATCACATTACAACCAGAGGAAGATCAAAGTGAACCAACAAGTCTTGATCCACCTATTGTTGGACCAACTAAGCAAGAGTTTCATTCGTTTGTTAAGATTTTAACGGCTTCAGATACAAGCACTCATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAATGCTTGCCTTCTTTGGATATGACACAAGCTACTCCTACTCAAGAACTTGTGACTAGAGATCTTCATGGCTTTGAATGGAGGTTTAAGCATATATTCAGAGGACAACCACGGAGGCATTTGCTTACTACGGGTTGGAGTACATTTGTATCCTCGAAAAGACTTGTAGCTGGAGATGCTTTTGTGTTCTTGAGGGGTGAGAATGGGGATTTACGGGTTGGAGTGAGACGATTAGCTCGGCATCAAAGCACAATGCCTACTTCGGTTATTTCAAGTCAGAGCATGCATTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTGCGTACAACAACAATCTTTGTTGTCTTTTACAAGCCTAGGATAAGCCAATTCATAGTTGGGGTGAACAAGTATATGGAAGCTATAAAGCATGGATTTTCTCTCGGTACCCGATTCAGAATGAGGTTTGAAGGAGAAGAGTCTCCTGAGAGAATATTTACTGGTACGATTGTGGGAAGTGGAGATCTATCTTCACAATGGCCAGCTTCTAAATGGAGGTCATTGCAGGTACAATGGGATGAGCCAACAACAGTTCAGAGACCAGATAAAGTCTCACCATGGGAGATAGAGCCTTTCTTGGCAACTTCCCCAATTTCAACTCCTGCTCAACAACCACAATCGAAATGCAAGCGGTCAAGACCCATCGAGCCATCAGTTAAAACACCAGCCCCACCTAGTTTCTTGTACAGCCTCCCTCAGAGCCAAGATTCCATTAATGCATCCCTTAAACTGTTTCAAGATCCATCACTTGAGAGAATTTCAGGTGGATACTCCTCAAACAACAGCTTCAAACCCGAGACTCCTCCTCCTCCAACGAATTGTAGCTATAGGTTGTTTGGATTTGATCTCACAAGCAATTCTCCTGCTCCAATCCCTCAAGACAAGCAACCGATGGATACTTGTGGAGCTGCCAAGTGTCAAGAACCCATCACTCCAACCTCAATGAGTGAGCAGAAGAAGCAACAAACATCAAGAAGTCGAACTAAAGTGCAAATGCAAGGCATTGCGGTTGGTCGTGCGGTTGATTTAACACTGTTGAAATCTTACGATGAACTGATTGATGAGCTTGAGGAGATGTTTGAGATTCAAGGACAGCTTCTTGCCCGAGACAAATGGATCGTTGTCTTCACTGATGATGAAGGAGATATGATGCTTGCTGGTGATGATCCGTGGAATGAGTTTTGCAAGATGGCAAAGAAGATATTTATATATTCGAGCGATGAGGTTAAGAAAATGACAACGAAACTGAAGATTTCTTCGTCGTTAGAGAATGAGGAATATGGTAATGAATCATTCGAAAATCGTAGTAGGGGGTGA

Protein Analysis

602

Amino Acids

67.66

Weight (kDa)

5.77

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 77 - 177 3.2e-22 B3 DNA binding domain
BRWD_AD PF25313 213 - 305 7.8e-10 BRWD/PHIP ancillary domain-like domain
ARF_AD PF06507 224 - 305 7.1e-34 Auxin response factor ancillary domain
AUX_IAA PF02309 429 - 522 3.3e-12 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 83, 988
Acc65I GGTACC 1 cut(s) 878
AccB1I GGYRCC 1 cut(s) 878
AciI CCGC 4 cut(s) 263, 1123, 1499, 1511
AclWI GGATC 4 cut(s) 335, 1226, 1616, 1652
AcoI YGGCCR 1 cut(s) 971
AcsI RAATTY 1 cut(s) 1248
AcuI CTGAAG 2 cut(s) 387, 1760
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 6 cut(s) 595, 778, 880, 937, 1002, 1178
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 9 cut(s) 14, 530, 726, 902, 1089, 1229, 1282, 1531, 1580
AloI GAACNNNNNNTCC 2 cut(s) 417, 449
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 6 cut(s) 673, 918, 1024, 1048, 1283, 1593
AlwI GGATC 4 cut(s) 335, 1226, 1616, 1652
Ama87I CYCGRG 2 cut(s) 1286, 1596
AoxI GGCC 1 cut(s) 971
ApeKI GCWGC 1 cut(s) 1400
ApoI RAATTY 1 cut(s) 1248
AseI ATTAAT 1 cut(s) 1206
Asp700I GAANNNNTTC 2 cut(s) 37, 190
Asp718I GGTACC 1 cut(s) 878
AspA2I CCTAGG 1 cut(s) 809
AspS9I GGNCC 2 cut(s) 95, 356
AsuHPI GGTGA 5 cut(s) 29, 662, 847, 1038, 1664
AsuII TTCGAA 1 cut(s) 1788
AvaI CYCGRG 2 cut(s) 1286, 1596
AvaII GGWCC 2 cut(s) 95, 356
AvrII CCTAGG 1 cut(s) 809
AxyI CCTNAGG 1 cut(s) 144
BaeI ACNNNNGTAYC 4 cut(s) 585, 618, 927, 960
BalI TGGCCA 1 cut(s) 973
BanI GGYRCC 1 cut(s) 878
BauI CACGAG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 1609
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 1387
BccI CCATC 6 cut(s) 1142, 1150, 1243, 1378, 1427, 1675
BceAI ACGGC 1 cut(s) 414
BciVI GTATCC 3 cut(s) 613, 1253, 1381
BcoDI GTCTC 6 cut(s) 673, 918, 1024, 1048, 1283, 1593
BfaI CTAG 3 cut(s) 510, 810, 1167
BfmI CTRYAG 2 cut(s) 756, 1318
BfuAI ACCTGC 2 cut(s) 83, 988
BfuI GTATCC 3 cut(s) 613, 1253, 1381
BglII AGATCT 2 cut(s) 514, 955
BisI GCNGC 1 cut(s) 1401
BlnI CCTAGG 1 cut(s) 809
BlsI GCNGC 1 cut(s) 1402
Bme18I GGWCC 2 cut(s) 95, 356
BmeT110I CYCGRG 2 cut(s) 1286, 1596
BmgT120I GGNCC 2 cut(s) 95, 356
BmiI GGNNCC 1 cut(s) 880
BmsI GCATC 4 cut(s) 619, 703, 1220, 1632
BpiI GAAGAC 1 cut(s) 1609
BpmI CTGGAG 1 cut(s) 645
Bpu14I TTCGAA 1 cut(s) 1788
BpuEI CTTGAG 6 cut(s) 105, 480, 664, 1262, 1353, 1580
BsaHI GRCGYC 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 1024
BsaJI CCNNGG 4 cut(s) 563, 809, 1049, 1661
BsaXI ACNNNNNCTCC 2 cut(s) 1282, 1312
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 937
Bse21I CCTNAGG 1 cut(s) 144
Bse3DI GCAATG 2 cut(s) 992, 1494
BseDI CCNNGG 4 cut(s) 563, 809, 1049, 1661
BseGI GGATG 2 cut(s) 1015, 1211
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 2 cut(s) 992, 1494
BseMII CTCAG 4 cut(s) 158, 305, 909, 1202
BseNI ACTGG 1 cut(s) 937
BseRI GAGGAG 5 cut(s) 1255, 1284, 1287, 1290, 1577
BseXI GCAGC 1 cut(s) 1387
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 973
BshNI GGYRCC 1 cut(s) 878
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 2 cut(s) 1286, 1596
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 6 cut(s) 673, 918, 1024, 1048, 1283, 1593
BsmBI CGTCTC 1 cut(s) 673
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 1 cut(s) 973
Bso31I GGTCTC 1 cut(s) 1024
BsoBI CYCGRG 2 cut(s) 1286, 1596
Bsp119I TTCGAA 1 cut(s) 1788
Bsp1286I GDGCHC 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 1176
Bsp19I CCATGG 1 cut(s) 1049
BspACI CCGC 4 cut(s) 263, 1123, 1499, 1511
BspANI GGCC 1 cut(s) 973
BspCNI CTCAG 4 cut(s) 157, 304, 910, 1201
BspLI GGNNCC 1 cut(s) 880
BspMI ACCTGC 2 cut(s) 83, 988
BspPI GGATC 4 cut(s) 335, 1226, 1616, 1652
BspT104I TTCGAA 1 cut(s) 1788
BspT107I GGYRCC 1 cut(s) 878
BspTNI GGTCTC 1 cut(s) 1024
BsrDI GCAATG 2 cut(s) 992, 1494
BsrGI TGTACA 1 cut(s) 1176
BsrI ACTGG 1 cut(s) 937
BssECI CCNNGG 4 cut(s) 563, 809, 1049, 1661
BssNI GRCGYC 1 cut(s) 170
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 2 cut(s) 809, 1049
Bst2BI CACGAG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 1024, 1224, 1527
Bst6I CTCTTC 1 cut(s) 903
BstACI GRCGYC 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 1176
BstBI TTCGAA 1 cut(s) 1788
BstC8I GCNNGC 5 cut(s) 461, 737, 975, 1121, 1647
BstDEI CTNAG 5 cut(s) 144, 291, 363, 918, 1188
BstDSI CCRYGG 3 cut(s) 563, 1049, 1661
BstF5I GGATG 2 cut(s) 1015, 1211
BstMAI GTCTC 6 cut(s) 673, 918, 1024, 1048, 1283, 1593
BstMWI GCNNNNNNNGC 3 cut(s) 629, 767, 1450
BstNSI RCATGY 1 cut(s) 739
BstSFI CTRYAG 2 cut(s) 756, 1318
BstV1I GCAGC 1 cut(s) 1387
BstV2I GAAGAC 1 cut(s) 1609
BstX2I RGATCY 3 cut(s) 514, 955, 1231
BstYI RGATCY 3 cut(s) 514, 955, 1231
Bsu36I CCTNAGG 1 cut(s) 144
BsuI GTATCC 3 cut(s) 613, 1253, 1381
BsuRI GGCC 1 cut(s) 973
BtgI CCRYGG 3 cut(s) 563, 1049, 1661
BtgZI GCGATG 1 cut(s) 1725
BtsCI GGATG 2 cut(s) 1015, 1211
BtsIMutI CAGTG 3 cut(s) 450, 1523, 1620
BveI ACCTGC 2 cut(s) 83, 988
Cac8I GCNNGC 5 cut(s) 461, 737, 975, 1121, 1647
Cfr13I GGNCC 2 cut(s) 95, 356
CseI GACGC 1 cut(s) 159
Csp6I GTAC 6 cut(s) 594, 777, 879, 936, 1001, 1177
CviAII CATG 8 cut(s) 154, 269, 419, 521, 736, 767, 863, 1050
CviQI GTAC 6 cut(s) 594, 777, 879, 936, 1001, 1177
DdeI CTNAG 5 cut(s) 144, 291, 363, 918, 1188
DraI TTTAAA 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 971
Eam1104I CTCTTC 1 cut(s) 903
EarI CTCTTC 1 cut(s) 903
EciI GGCGGA 1 cut(s) 278
Eco130I CCWWGG 2 cut(s) 809, 1049
Eco31I GGTCTC 1 cut(s) 1024
Eco47I GGWCC 2 cut(s) 95, 356
Eco57I CTGAAG 2 cut(s) 387, 1760
Eco81I CCTNAGG 1 cut(s) 144
Eco88I CYCGRG 2 cut(s) 1286, 1596
EcoT14I CCWWGG 2 cut(s) 809, 1049
EcoT22I ATGCAT 2 cut(s) 741, 1213
ErhI CCWWGG 2 cut(s) 809, 1049
Esp3I CGTCTC 1 cut(s) 673
FaeI CATG 8 cut(s) 157, 272, 422, 524, 739, 770, 866, 1053
FalI AAGNNNNNCTT 2 cut(s) 1572, 1604
FatI CATG 8 cut(s) 153, 268, 418, 520, 735, 766, 862, 1049
Fnu4HI GCNGC 1 cut(s) 1401
FokI GGATG 2 cut(s) 1022, 1198
Fsp4HI GCNGC 1 cut(s) 1401
FspBI CTAG 3 cut(s) 510, 810, 1167
GluI GCNGC 1 cut(s) 1401
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 1 cut(s) 973
HgaI GACGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 8 cut(s) 157, 272, 422, 524, 739, 770, 866, 1053
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 8 cut(s) 186, 426, 885, 911, 1199, 1291, 1576, 1781
HphI GGTGA 5 cut(s) 29, 662, 847, 1038, 1664
Hpy166II GTNNAC 5 cut(s) 174, 286, 326, 443, 838
Hpy188I TCNGA 9 cut(s) 32, 196, 294, 406, 554, 732, 890, 1029, 1191
Hpy8I GTNNAC 5 cut(s) 174, 286, 326, 443, 838
Hpy99I CGWCG 1 cut(s) 1756
HpyAV CCTTC 4 cut(s) 8, 474, 896, 1625
HpyCH4III ACNGT 3 cut(s) 1024, 1224, 1527
HpyCH4V TGCA 8 cut(s) 92, 739, 997, 1119, 1211, 1483, 1489, 1677
HpyF10VI GCNNNNNNNGC 3 cut(s) 629, 767, 1450
HpyF3I CTNAG 5 cut(s) 144, 291, 363, 918, 1188
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 8 cut(s) 157, 272, 422, 524, 739, 770, 866, 1053
KpnI GGTACC 1 cut(s) 882
LmnI GCTCC 3 cut(s) 265, 1363, 1397
Lsp1109I GCAGC 1 cut(s) 1387
LweI GCATC 4 cut(s) 619, 703, 1220, 1632
MaeI CTAG 3 cut(s) 510, 810, 1167
MaeIII GTNAC 3 cut(s) 149, 250, 505
MflI RGATCY 3 cut(s) 514, 955, 1231
MhlI GDGCHC 1 cut(s) 121
MlsI TGGCCA 1 cut(s) 973
MluCI AATT 6 cut(s) 190, 821, 1083, 1248, 1309, 1348
MluNI TGGCCA 1 cut(s) 973
MlyI GAGTC 2 cut(s) 920, 1285
MmeI TCCRAC 5 cut(s) 334, 569, 652, 1328, 1451
Mox20I TGGCCA 1 cut(s) 973
Mph1103I ATGCAT 2 cut(s) 741, 1213
MroXI GAANNNNTTC 2 cut(s) 37, 190
MscI TGGCCA 1 cut(s) 973
MseI TTAA 9 cut(s) 257, 387, 395, 540, 1149, 1206, 1218, 1520, 1719
Msp20I TGGCCA 1 cut(s) 973
Mva1269I GAATGC 1 cut(s) 461
MwoI GCNNNNNNNGC 3 cut(s) 629, 767, 1450
NcoI CCATGG 1 cut(s) 1049
NlaIII CATG 8 cut(s) 157, 272, 422, 524, 739, 770, 866, 1053
NlaIV GGNNCC 1 cut(s) 880
NmeAIII GCCGAG 1 cut(s) 670
NmuCI GTSAC 3 cut(s) 149, 250, 505
NsiI ATGCAT 2 cut(s) 741, 1213
NspI RCATGY 1 cut(s) 739
NspV TTCGAA 1 cut(s) 1788
PaeI GCATGC 1 cut(s) 739
PctI GAATGC 1 cut(s) 461
PdmI GAANNNNTTC 2 cut(s) 37, 190
PfeI GAWTC 6 cut(s) 186, 426, 885, 1199, 1576, 1781
PkrI GCNGC 1 cut(s) 1402
PleI GAGTC 2 cut(s) 919, 1285
PpsI GAGTC 2 cut(s) 919, 1285
PshBI ATTAAT 1 cut(s) 1206
PspN4I GGNNCC 1 cut(s) 880
PspPI GGNCC 2 cut(s) 95, 356
PsuI RGATCY 3 cut(s) 514, 955, 1231
RsaI GTAC 6 cut(s) 595, 778, 880, 937, 1002, 1178
RsaNI GTAC 6 cut(s) 594, 777, 879, 936, 1001, 1177
SaqAI TTAA 9 cut(s) 257, 387, 395, 540, 1149, 1206, 1218, 1520, 1719
SatI GCNGC 1 cut(s) 1401
Sau96I GGNCC 2 cut(s) 95, 356
SchI GAGTC 2 cut(s) 920, 1285
SduI GDGCHC 1 cut(s) 121
SfaNI GCATC 4 cut(s) 619, 703, 1220, 1632
SfcI CTRYAG 2 cut(s) 756, 1318
SfuI TTCGAA 1 cut(s) 1788
SinI GGWCC 2 cut(s) 95, 356
SmlI CTYRAG 6 cut(s) 120, 495, 643, 1241, 1368, 1559
SmoI CTYRAG 6 cut(s) 120, 495, 643, 1241, 1368, 1559
SphI GCATGC 1 cut(s) 739
Sse9I AATT 6 cut(s) 190, 821, 1083, 1248, 1309, 1348
SsiI CCGC 4 cut(s) 263, 1123, 1499, 1511
SspI AATATT 1 cut(s) 927
SspMI CTAG 3 cut(s) 510, 810, 1167
StyI CCWWGG 2 cut(s) 809, 1049
TaaI ACNGT 3 cut(s) 1024, 1224, 1527
TaqI TCGA 7 cut(s) 238, 608, 1112, 1137, 1471, 1706, 1788
TasI AATT 6 cut(s) 190, 821, 1083, 1248, 1309, 1348
TatI WGTACW 2 cut(s) 593, 1176
TfiI GAWTC 6 cut(s) 186, 426, 885, 1199, 1576, 1781
Tru1I TTAA 9 cut(s) 257, 387, 395, 540, 1149, 1206, 1218, 1520, 1719
Tru9I TTAA 9 cut(s) 257, 387, 395, 540, 1149, 1206, 1218, 1520, 1719
TscAI CASTG 3 cut(s) 457, 1530, 1627
TseFI GTSAC 3 cut(s) 149, 250, 505
TseI GCWGC 1 cut(s) 1400
Tsp45I GTSAC 3 cut(s) 149, 250, 505
TspDTI ATGAA 7 cut(s) 285, 365, 509, 814, 1557, 1644, 1794
TspGWI ACGGA 2 cut(s) 580, 1650
TspRI CASTG 3 cut(s) 457, 1530, 1627
VpaK11BI GGWCC 2 cut(s) 95, 356
VspI ATTAAT 1 cut(s) 1206
XapI RAATTY 1 cut(s) 1248
XceI RCATGY 1 cut(s) 739
XcmI CCANNNNNNNNNTGG 2 cut(s) 827, 981
XmaJI CCTAGG 1 cut(s) 809
XmnI GAANNNNTTC 2 cut(s) 37, 190
XspI CTAG 3 cut(s) 510, 810, 1167
Zsp2I ATGCAT 2 cut(s) 741, 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.