Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G46530 AT2G46530 AT2G46530 AT3G61830 AT3G61830 |
| fragaria_vesca | FvH4_7g16840 FvH4_7g16840 FvH4_7g16840 FvH4_7g16840 FvH4_7g16840 FvH4_7g16840 |
| malus_domestica | MD01G1083400.v1.1 MD07G1152100.v1.1 |
| prunus_persica | Prupe.2G190400_v2.0.a1 Prupe.2G190400_v2.0.a1 Prupe.2G190400_v2.0.a1 |
| pyrus_communis | pycom07g15010 |
| rosa_chinensis | RchiOBHm_Chr1g0360041 |
| rosa_laevigata | RLG00000027836 |
| rosa_multiflora | Rmu_ssc0000368.1_g000035 |
| rosa_roxburghii | Rroxscaffold_4G00296430 |
| rosa_rugosa | Rorug01G0274600 |
| rosa_samantha | Rh1AG288600 Rh1BG254100 Rh1CG271600 Rh1DG283200 |
| rosa_wichuraiana | Rw1G025590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 83, 988 |
| Acc65I | GGTACC | 1 cut(s) | 878 |
| AccB1I | GGYRCC | 1 cut(s) | 878 |
| AciI | CCGC | 4 cut(s) | 263, 1123, 1499, 1511 |
| AclWI | GGATC | 4 cut(s) | 335, 1226, 1616, 1652 |
| AcoI | YGGCCR | 1 cut(s) | 971 |
| AcsI | RAATTY | 1 cut(s) | 1248 |
| AcuI | CTGAAG | 2 cut(s) | 387, 1760 |
| AcyI | GRCGYC | 1 cut(s) | 170 |
| AfaI | GTAC | 6 cut(s) | 595, 778, 880, 937, 1002, 1178 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 353 |
| AgsI | TTSAA | 9 cut(s) | 14, 530, 726, 902, 1089, 1229, 1282, 1531, 1580 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 417, 449 |
| Alw21I | GWGCWC | 1 cut(s) | 121 |
| Alw26I | GTCTC | 6 cut(s) | 673, 918, 1024, 1048, 1283, 1593 |
| AlwI | GGATC | 4 cut(s) | 335, 1226, 1616, 1652 |
| Ama87I | CYCGRG | 2 cut(s) | 1286, 1596 |
| AoxI | GGCC | 1 cut(s) | 971 |
| ApeKI | GCWGC | 1 cut(s) | 1400 |
| ApoI | RAATTY | 1 cut(s) | 1248 |
| AseI | ATTAAT | 1 cut(s) | 1206 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 37, 190 |
| Asp718I | GGTACC | 1 cut(s) | 878 |
| AspA2I | CCTAGG | 1 cut(s) | 809 |
| AspS9I | GGNCC | 2 cut(s) | 95, 356 |
| AsuHPI | GGTGA | 5 cut(s) | 29, 662, 847, 1038, 1664 |
| AsuII | TTCGAA | 1 cut(s) | 1788 |
| AvaI | CYCGRG | 2 cut(s) | 1286, 1596 |
| AvaII | GGWCC | 2 cut(s) | 95, 356 |
| AvrII | CCTAGG | 1 cut(s) | 809 |
| AxyI | CCTNAGG | 1 cut(s) | 144 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 585, 618, 927, 960 |
| BalI | TGGCCA | 1 cut(s) | 973 |
| BanI | GGYRCC | 1 cut(s) | 878 |
| BauI | CACGAG | 1 cut(s) | 114 |
| BbsI | GAAGAC | 1 cut(s) | 1609 |
| Bbv12I | GWGCWC | 1 cut(s) | 121 |
| BbvI | GCAGC | 1 cut(s) | 1387 |
| BccI | CCATC | 6 cut(s) | 1142, 1150, 1243, 1378, 1427, 1675 |
| BceAI | ACGGC | 1 cut(s) | 414 |
| BciVI | GTATCC | 3 cut(s) | 613, 1253, 1381 |
| BcoDI | GTCTC | 6 cut(s) | 673, 918, 1024, 1048, 1283, 1593 |
| BfaI | CTAG | 3 cut(s) | 510, 810, 1167 |
| BfmI | CTRYAG | 2 cut(s) | 756, 1318 |
| BfuAI | ACCTGC | 2 cut(s) | 83, 988 |
| BfuI | GTATCC | 3 cut(s) | 613, 1253, 1381 |
| BglII | AGATCT | 2 cut(s) | 514, 955 |
| BisI | GCNGC | 1 cut(s) | 1401 |
| BlnI | CCTAGG | 1 cut(s) | 809 |
| BlsI | GCNGC | 1 cut(s) | 1402 |
| Bme18I | GGWCC | 2 cut(s) | 95, 356 |
| BmeT110I | CYCGRG | 2 cut(s) | 1286, 1596 |
| BmgT120I | GGNCC | 2 cut(s) | 95, 356 |
| BmiI | GGNNCC | 1 cut(s) | 880 |
| BmsI | GCATC | 4 cut(s) | 619, 703, 1220, 1632 |
| BpiI | GAAGAC | 1 cut(s) | 1609 |
| BpmI | CTGGAG | 1 cut(s) | 645 |
| Bpu14I | TTCGAA | 1 cut(s) | 1788 |
| BpuEI | CTTGAG | 6 cut(s) | 105, 480, 664, 1262, 1353, 1580 |
| BsaHI | GRCGYC | 1 cut(s) | 170 |
| BsaI | GGTCTC | 1 cut(s) | 1024 |
| BsaJI | CCNNGG | 4 cut(s) | 563, 809, 1049, 1661 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1282, 1312 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 353 |
| Bse1I | ACTGG | 1 cut(s) | 937 |
| Bse21I | CCTNAGG | 1 cut(s) | 144 |
| Bse3DI | GCAATG | 2 cut(s) | 992, 1494 |
| BseDI | CCNNGG | 4 cut(s) | 563, 809, 1049, 1661 |
| BseGI | GGATG | 2 cut(s) | 1015, 1211 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 353 |
| BseMI | GCAATG | 2 cut(s) | 992, 1494 |
| BseMII | CTCAG | 4 cut(s) | 158, 305, 909, 1202 |
| BseNI | ACTGG | 1 cut(s) | 937 |
| BseRI | GAGGAG | 5 cut(s) | 1255, 1284, 1287, 1290, 1577 |
| BseXI | GCAGC | 1 cut(s) | 1387 |
| BsgI | GTGCAG | 1 cut(s) | 111 |
| BshFI | GGCC | 1 cut(s) | 973 |
| BshNI | GGYRCC | 1 cut(s) | 878 |
| BsiHKAI | GWGCWC | 1 cut(s) | 121 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1286, 1596 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 353 |
| BsmAI | GTCTC | 6 cut(s) | 673, 918, 1024, 1048, 1283, 1593 |
| BsmBI | CGTCTC | 1 cut(s) | 673 |
| BsmI | GAATGC | 1 cut(s) | 461 |
| BsnI | GGCC | 1 cut(s) | 973 |
| Bso31I | GGTCTC | 1 cut(s) | 1024 |
| BsoBI | CYCGRG | 2 cut(s) | 1286, 1596 |
| Bsp119I | TTCGAA | 1 cut(s) | 1788 |
| Bsp1286I | GDGCHC | 1 cut(s) | 121 |
| Bsp1407I | TGTACA | 1 cut(s) | 1176 |
| Bsp19I | CCATGG | 1 cut(s) | 1049 |
| BspACI | CCGC | 4 cut(s) | 263, 1123, 1499, 1511 |
| BspANI | GGCC | 1 cut(s) | 973 |
| BspCNI | CTCAG | 4 cut(s) | 157, 304, 910, 1201 |
| BspLI | GGNNCC | 1 cut(s) | 880 |
| BspMI | ACCTGC | 2 cut(s) | 83, 988 |
| BspPI | GGATC | 4 cut(s) | 335, 1226, 1616, 1652 |
| BspT104I | TTCGAA | 1 cut(s) | 1788 |
| BspT107I | GGYRCC | 1 cut(s) | 878 |
| BspTNI | GGTCTC | 1 cut(s) | 1024 |
| BsrDI | GCAATG | 2 cut(s) | 992, 1494 |
| BsrGI | TGTACA | 1 cut(s) | 1176 |
| BsrI | ACTGG | 1 cut(s) | 937 |
| BssECI | CCNNGG | 4 cut(s) | 563, 809, 1049, 1661 |
| BssNI | GRCGYC | 1 cut(s) | 170 |
| BssSI | CACGAG | 1 cut(s) | 114 |
| BssT1I | CCWWGG | 2 cut(s) | 809, 1049 |
| Bst2BI | CACGAG | 1 cut(s) | 114 |
| Bst4CI | ACNGT | 3 cut(s) | 1024, 1224, 1527 |
| Bst6I | CTCTTC | 1 cut(s) | 903 |
| BstACI | GRCGYC | 1 cut(s) | 170 |
| BstAUI | TGTACA | 1 cut(s) | 1176 |
| BstBI | TTCGAA | 1 cut(s) | 1788 |
| BstC8I | GCNNGC | 5 cut(s) | 461, 737, 975, 1121, 1647 |
| BstDEI | CTNAG | 5 cut(s) | 144, 291, 363, 918, 1188 |
| BstDSI | CCRYGG | 3 cut(s) | 563, 1049, 1661 |
| BstF5I | GGATG | 2 cut(s) | 1015, 1211 |
| BstMAI | GTCTC | 6 cut(s) | 673, 918, 1024, 1048, 1283, 1593 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 629, 767, 1450 |
| BstNSI | RCATGY | 1 cut(s) | 739 |
| BstSFI | CTRYAG | 2 cut(s) | 756, 1318 |
| BstV1I | GCAGC | 1 cut(s) | 1387 |
| BstV2I | GAAGAC | 1 cut(s) | 1609 |
| BstX2I | RGATCY | 3 cut(s) | 514, 955, 1231 |
| BstYI | RGATCY | 3 cut(s) | 514, 955, 1231 |
| Bsu36I | CCTNAGG | 1 cut(s) | 144 |
| BsuI | GTATCC | 3 cut(s) | 613, 1253, 1381 |
| BsuRI | GGCC | 1 cut(s) | 973 |
| BtgI | CCRYGG | 3 cut(s) | 563, 1049, 1661 |
| BtgZI | GCGATG | 1 cut(s) | 1725 |
| BtsCI | GGATG | 2 cut(s) | 1015, 1211 |
| BtsIMutI | CAGTG | 3 cut(s) | 450, 1523, 1620 |
| BveI | ACCTGC | 2 cut(s) | 83, 988 |
| Cac8I | GCNNGC | 5 cut(s) | 461, 737, 975, 1121, 1647 |
| Cfr13I | GGNCC | 2 cut(s) | 95, 356 |
| CseI | GACGC | 1 cut(s) | 159 |
| Csp6I | GTAC | 6 cut(s) | 594, 777, 879, 936, 1001, 1177 |
| CviAII | CATG | 8 cut(s) | 154, 269, 419, 521, 736, 767, 863, 1050 |
| CviQI | GTAC | 6 cut(s) | 594, 777, 879, 936, 1001, 1177 |
| DdeI | CTNAG | 5 cut(s) | 144, 291, 363, 918, 1188 |
| DraI | TTTAAA | 1 cut(s) | 258 |
| EaeI | YGGCCR | 1 cut(s) | 971 |
| Eam1104I | CTCTTC | 1 cut(s) | 903 |
| EarI | CTCTTC | 1 cut(s) | 903 |
| EciI | GGCGGA | 1 cut(s) | 278 |
| Eco130I | CCWWGG | 2 cut(s) | 809, 1049 |
| Eco31I | GGTCTC | 1 cut(s) | 1024 |
| Eco47I | GGWCC | 2 cut(s) | 95, 356 |
| Eco57I | CTGAAG | 2 cut(s) | 387, 1760 |
| Eco81I | CCTNAGG | 1 cut(s) | 144 |
| Eco88I | CYCGRG | 2 cut(s) | 1286, 1596 |
| EcoT14I | CCWWGG | 2 cut(s) | 809, 1049 |
| EcoT22I | ATGCAT | 2 cut(s) | 741, 1213 |
| ErhI | CCWWGG | 2 cut(s) | 809, 1049 |
| Esp3I | CGTCTC | 1 cut(s) | 673 |
| FaeI | CATG | 8 cut(s) | 157, 272, 422, 524, 739, 770, 866, 1053 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1572, 1604 |
| FatI | CATG | 8 cut(s) | 153, 268, 418, 520, 735, 766, 862, 1049 |
| Fnu4HI | GCNGC | 1 cut(s) | 1401 |
| FokI | GGATG | 2 cut(s) | 1022, 1198 |
| Fsp4HI | GCNGC | 1 cut(s) | 1401 |
| FspBI | CTAG | 3 cut(s) | 510, 810, 1167 |
| GluI | GCNGC | 1 cut(s) | 1401 |
| GsuI | CTGGAG | 1 cut(s) | 645 |
| HaeIII | GGCC | 1 cut(s) | 973 |
| HgaI | GACGC | 1 cut(s) | 159 |
| Hin1I | GRCGYC | 1 cut(s) | 170 |
| Hin1II | CATG | 8 cut(s) | 157, 272, 422, 524, 739, 770, 866, 1053 |
| HincII | GTYRAC | 1 cut(s) | 174 |
| HindII | GTYRAC | 1 cut(s) | 174 |
| HinfI | GANTC | 8 cut(s) | 186, 426, 885, 911, 1199, 1291, 1576, 1781 |
| HphI | GGTGA | 5 cut(s) | 29, 662, 847, 1038, 1664 |
| Hpy166II | GTNNAC | 5 cut(s) | 174, 286, 326, 443, 838 |
| Hpy188I | TCNGA | 9 cut(s) | 32, 196, 294, 406, 554, 732, 890, 1029, 1191 |
| Hpy8I | GTNNAC | 5 cut(s) | 174, 286, 326, 443, 838 |
| Hpy99I | CGWCG | 1 cut(s) | 1756 |
| HpyAV | CCTTC | 4 cut(s) | 8, 474, 896, 1625 |
| HpyCH4III | ACNGT | 3 cut(s) | 1024, 1224, 1527 |
| HpyCH4V | TGCA | 8 cut(s) | 92, 739, 997, 1119, 1211, 1483, 1489, 1677 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 629, 767, 1450 |
| HpyF3I | CTNAG | 5 cut(s) | 144, 291, 363, 918, 1188 |
| Hsp92I | GRCGYC | 1 cut(s) | 170 |
| Hsp92II | CATG | 8 cut(s) | 157, 272, 422, 524, 739, 770, 866, 1053 |
| KpnI | GGTACC | 1 cut(s) | 882 |
| LmnI | GCTCC | 3 cut(s) | 265, 1363, 1397 |
| Lsp1109I | GCAGC | 1 cut(s) | 1387 |
| LweI | GCATC | 4 cut(s) | 619, 703, 1220, 1632 |
| MaeI | CTAG | 3 cut(s) | 510, 810, 1167 |
| MaeIII | GTNAC | 3 cut(s) | 149, 250, 505 |
| MflI | RGATCY | 3 cut(s) | 514, 955, 1231 |
| MhlI | GDGCHC | 1 cut(s) | 121 |
| MlsI | TGGCCA | 1 cut(s) | 973 |
| MluCI | AATT | 6 cut(s) | 190, 821, 1083, 1248, 1309, 1348 |
| MluNI | TGGCCA | 1 cut(s) | 973 |
| MlyI | GAGTC | 2 cut(s) | 920, 1285 |
| MmeI | TCCRAC | 5 cut(s) | 334, 569, 652, 1328, 1451 |
| Mox20I | TGGCCA | 1 cut(s) | 973 |
| Mph1103I | ATGCAT | 2 cut(s) | 741, 1213 |
| MroXI | GAANNNNTTC | 2 cut(s) | 37, 190 |
| MscI | TGGCCA | 1 cut(s) | 973 |
| MseI | TTAA | 9 cut(s) | 257, 387, 395, 540, 1149, 1206, 1218, 1520, 1719 |
| Msp20I | TGGCCA | 1 cut(s) | 973 |
| Mva1269I | GAATGC | 1 cut(s) | 461 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 629, 767, 1450 |
| NcoI | CCATGG | 1 cut(s) | 1049 |
| NlaIII | CATG | 8 cut(s) | 157, 272, 422, 524, 739, 770, 866, 1053 |
| NlaIV | GGNNCC | 1 cut(s) | 880 |
| NmeAIII | GCCGAG | 1 cut(s) | 670 |
| NmuCI | GTSAC | 3 cut(s) | 149, 250, 505 |
| NsiI | ATGCAT | 2 cut(s) | 741, 1213 |
| NspI | RCATGY | 1 cut(s) | 739 |
| NspV | TTCGAA | 1 cut(s) | 1788 |
| PaeI | GCATGC | 1 cut(s) | 739 |
| PctI | GAATGC | 1 cut(s) | 461 |
| PdmI | GAANNNNTTC | 2 cut(s) | 37, 190 |
| PfeI | GAWTC | 6 cut(s) | 186, 426, 885, 1199, 1576, 1781 |
| PkrI | GCNGC | 1 cut(s) | 1402 |
| PleI | GAGTC | 2 cut(s) | 919, 1285 |
| PpsI | GAGTC | 2 cut(s) | 919, 1285 |
| PshBI | ATTAAT | 1 cut(s) | 1206 |
| PspN4I | GGNNCC | 1 cut(s) | 880 |
| PspPI | GGNCC | 2 cut(s) | 95, 356 |
| PsuI | RGATCY | 3 cut(s) | 514, 955, 1231 |
| RsaI | GTAC | 6 cut(s) | 595, 778, 880, 937, 1002, 1178 |
| RsaNI | GTAC | 6 cut(s) | 594, 777, 879, 936, 1001, 1177 |
| SaqAI | TTAA | 9 cut(s) | 257, 387, 395, 540, 1149, 1206, 1218, 1520, 1719 |
| SatI | GCNGC | 1 cut(s) | 1401 |
| Sau96I | GGNCC | 2 cut(s) | 95, 356 |
| SchI | GAGTC | 2 cut(s) | 920, 1285 |
| SduI | GDGCHC | 1 cut(s) | 121 |
| SfaNI | GCATC | 4 cut(s) | 619, 703, 1220, 1632 |
| SfcI | CTRYAG | 2 cut(s) | 756, 1318 |
| SfuI | TTCGAA | 1 cut(s) | 1788 |
| SinI | GGWCC | 2 cut(s) | 95, 356 |
| SmlI | CTYRAG | 6 cut(s) | 120, 495, 643, 1241, 1368, 1559 |
| SmoI | CTYRAG | 6 cut(s) | 120, 495, 643, 1241, 1368, 1559 |
| SphI | GCATGC | 1 cut(s) | 739 |
| Sse9I | AATT | 6 cut(s) | 190, 821, 1083, 1248, 1309, 1348 |
| SsiI | CCGC | 4 cut(s) | 263, 1123, 1499, 1511 |
| SspI | AATATT | 1 cut(s) | 927 |
| SspMI | CTAG | 3 cut(s) | 510, 810, 1167 |
| StyI | CCWWGG | 2 cut(s) | 809, 1049 |
| TaaI | ACNGT | 3 cut(s) | 1024, 1224, 1527 |
| TaqI | TCGA | 7 cut(s) | 238, 608, 1112, 1137, 1471, 1706, 1788 |
| TasI | AATT | 6 cut(s) | 190, 821, 1083, 1248, 1309, 1348 |
| TatI | WGTACW | 2 cut(s) | 593, 1176 |
| TfiI | GAWTC | 6 cut(s) | 186, 426, 885, 1199, 1576, 1781 |
| Tru1I | TTAA | 9 cut(s) | 257, 387, 395, 540, 1149, 1206, 1218, 1520, 1719 |
| Tru9I | TTAA | 9 cut(s) | 257, 387, 395, 540, 1149, 1206, 1218, 1520, 1719 |
| TscAI | CASTG | 3 cut(s) | 457, 1530, 1627 |
| TseFI | GTSAC | 3 cut(s) | 149, 250, 505 |
| TseI | GCWGC | 1 cut(s) | 1400 |
| Tsp45I | GTSAC | 3 cut(s) | 149, 250, 505 |
| TspDTI | ATGAA | 7 cut(s) | 285, 365, 509, 814, 1557, 1644, 1794 |
| TspGWI | ACGGA | 2 cut(s) | 580, 1650 |
| TspRI | CASTG | 3 cut(s) | 457, 1530, 1627 |
| VpaK11BI | GGWCC | 2 cut(s) | 95, 356 |
| VspI | ATTAAT | 1 cut(s) | 1206 |
| XapI | RAATTY | 1 cut(s) | 1248 |
| XceI | RCATGY | 1 cut(s) | 739 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 827, 981 |
| XmaJI | CCTAGG | 1 cut(s) | 809 |
| XmnI | GAANNNNTTC | 2 cut(s) | 37, 190 |
| XspI | CTAG | 3 cut(s) | 510, 810, 1167 |
| Zsp2I | ATGCAT | 2 cut(s) | 741, 1213 |