Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006016

Physical Location & Seq

Genomic Coordinates Forward (+)

38399793 .. 38404791

Gene Structure 4999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG254100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGGCGCACAGCGAGTGTGACTCTTCATCTATTTCTCGTGCTACTGCCGATACAGGTTTTGGAGGTGCTTTGTATACAGAGCTATGGAAGTTATGTGCAGGGCCTCTGGTGGATGTGCCCACTCCTGGAGAGAGAGTGTTCTACTTTCCCCAGGGTCATATGGAACAACTGGAAGCATCAACAAATCAAGAACTGAATCCGCAAATCCCTCGGTTTAATATACCTTCGAAGATCCTTTGTCGTGTGGTTAACATTCAATTACTGGCAGAACGAGAAACCGATGAGGTTTATGCTCAGATCACTTTGCACCCAGAATCAGATCAAAGTGAACCTACAAGTCCTGATCCATGTGTACCGGAGCCTCCAAAACCGGCTACTTACTCGTTTTGCAAGATTTTGACAGCTTCTGATACAAGCACCCATGGAGGGTTCTCTGTTCTTCGAAAGCATGCTAATGATTGCCTGCCTCCTTTGGACATGAACCAAGCAACTCCAACTCAGGAATTGGTTGCCAAAGATCTTCATGGGTATGAGTGGAAATTTAAGCATATCTTCAGAGGTCAACCGCGGAGGCATTTACTTACCACAGGATGGAGTACATTTGTCACTTCCAAAAGATTGGTTGCTGGTGATGCATTTGTGTTTTTGAGGGGTGGTAATGGGGAACTACGGGTTGGGGTTCGGCGTCTTGCTCGTCAACAGACTCCCATGCCTTCATCAGTGATATCTAGCCAAAGTATGCATCTTGGAGTGCTTGCAACTGCTTCTCATGCTGTCATGACCTCAACTCTCTTTGTTGTCTATTACAAGCCCAGGACAAGCCAATTTATTGTTGGCTTAAACAAATATCTTGAAGCCATCAACAATAAGTTTTCTGTTGGCATGCGCTTTAAAATGCGATTTGAGGGGGAAGACTCACCGGAAAGAAGATTCACTGGCACTATAGTAGGGGTTGGGGATTTATCCCCTCACTGGTCTGAATCTAAATGGAGATCTCTGAAGGTTCAATGGGATGAACATGCCACAGTACCAAGGCCGGATAGGGTTTCTCCTTGGGAGATAGAGCCATTTGTAGCTTCTGTTCCGTTAAATCTTGCTCAACCAGTTGTAAAGAGCAAAAGGCCTAAAACTGTTGAAATTGCTTCATCTGAAATTACCACCAATTCAACTGCTTCACCTTTCTGGTATCAAGGGTCAAACCAGTCTGTCGAGCCAACTCAATTAGGCAGTGTTGCTGAAGTCCAAAGCTCTGGTAGCCAGGCTGTGTGGCCCCCGAGGCAGAAAGAGGGCAATGGCAGCAGCTACTCTAGCTCAAGGATCTGTGCAGAGGGCATCTGGCCTTCTTCTCCAAAGGTGAATGTCTCTTTAAGCCTTTTTGCAGACTCACAAGAGGGCAACAAGAATGTTTCTATGGGGTCTACGCCACCTAGCTTCCCCTCCCCTCCTTCAAAACCTAGCAAAGGCCCGGTGCATGACCAGCTGGAAACAGGGAAAAAGTCTGAGTCTTCTTCAGGTTTTCGGTTGTTTGGTTATGATGTGCCAAACTCAATTACTGCCCGTTTCCGGGAGAGAGAGCCAATGTTTACGACAGTGTGCTGTGGTGCCAAAGGACCTATTCTGGCCGCTGCATCAGAACTTGATCAGGACCTGGATATTTCAAAAATCTCAAAAGAACAGATGCAAGTTGTATCAGAGATGCCACCAATCGAGACACAAAGCAAGCAGGGATCCACTGTTTCAACGAGATCTCGCACTAAGGTGCACATGCAGGGGGTTGCTGTTGGTCGTGCTGTGGACTTGACTGCATTGAAGGGTTATGATGATCTAATTAATGAGCTAGAGAAAATGTTTGAGATCAAAGGAGAGCTTCGTCCAGCAAACAAATGGGCAGTTGTTTTTACTGATGATGAGAATGACATGATGCTTCTTGGCGATGATCAATGGCAAGATTTTTGCCGGACTGTGAAGAAGATATTTATCTATTCAAGTGATTACGTACAGATGCTAAGACAAGGCAAGCAAAAAAATTCAGCATTAGTGTGTCAGGAGACTGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006355 GO:0008150 GO:0009506 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030054 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

686

Amino Acids

76.01

Weight (kDa)

6.73

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	129 - 229	1.8e-22	B3 DNA binding domain
BRWD_AD	PF25313	256 - 357	2.5e-09	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	276 - 357	1e-36	Auxin response factor ancillary domain
AUX_IAA	PF02309	571 - 618	1.9e-06	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46530 AT2G46530 AT2G46530 AT3G61830 AT3G61830
fragaria_vesca	FvH4_7g16840 FvH4_7g16840 FvH4_7g16840 FvH4_7g16840 FvH4_7g16840 FvH4_7g16840
malus_domestica	MD01G1083400.v1.1 MD07G1152100.v1.1
prunus_persica	Prupe.2G190400_v2.0.a1 Prupe.2G190400_v2.0.a1 Prupe.2G190400_v2.0.a1
pyrus_communis	pycom07g15010
rosa_chinensis	RchiOBHm_Chr1g0360041
rosa_laevigata	RLG00000027836
rosa_multiflora	Rmu_ssc0000368.1_g000035
rosa_roxburghii	Rroxscaffold_4G00296430
rosa_rugosa	Rorug01G0274600
rosa_samantha	Rh1AG288600 Rh1BG254100 Rh1CG271600 Rh1DG283200
rosa_wichuraiana	Rw1G025590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1601
AccB7I	CCANNNNNTGG	1 cut(s)	591
AccI	GTMKAC	2 cut(s)	74, 1418
AccII	CGCG	1 cut(s)	568
AciI	CCGC	4 cut(s)	200, 566, 568, 1623
AclWI	GGATC	5 cut(s)	226, 338, 1325, 1722, 1735
AcoI	YGGCCR	1 cut(s)	1620
AcsI	RAATTY	2 cut(s)	539, 2026
AcuI	CTGAAG	4 cut(s)	538, 1019, 1257, 1494
AcyI	GRCGYC	1 cut(s)	685
AfaI	GTAC	4 cut(s)	354, 598, 1029, 1998
AfiI	CCNNNNNNNGG	7 cut(s)	125, 426, 591, 972, 1460, 1563, 1564
AjnI	CCWGG	5 cut(s)	124, 150, 812, 1257, 1647
AjuI	GAANNNNNNNTTGG	2 cut(s)	657, 689
AleI	CACNNNNGTG	1 cut(s)	1757
Alw21I	GWGCWC	1 cut(s)	1764
Alw26I	GTCTC	3 cut(s)	1366, 1703, 2042
Alw44I	GTGCAC	1 cut(s)	1760
AlwI	GGATC	5 cut(s)	226, 338, 1325, 1722, 1735
AlwNI	CAGNNNCTG	2 cut(s)	407, 1648
Ama87I	CYCGRG	1 cut(s)	1273
AoxI	GGCC	7 cut(s)	101, 1034, 1121, 1268, 1337, 1462, 1620
ApaLI	GTGCAC	1 cut(s)	1760
ApeKI	GCWGC	3 cut(s)	1296, 1299, 1625
ApoI	RAATTY	2 cut(s)	539, 2026
AseI	ATTAAT	1 cut(s)	1830
AspLEI	GCGC	2 cut(s)	7, 888
AspS9I	GGNCC	5 cut(s)	101, 1269, 1463, 1610, 1645
AsuC2I	CCSGG	2 cut(s)	1466, 1565
AsuHPI	GGTGA	4 cut(s)	641, 909, 1167, 1366
AsuII	TTCGAA	2 cut(s)	227, 442
AvaI	CYCGRG	1 cut(s)	1273
AvaII	GGWCC	2 cut(s)	1610, 1645
BaeGI	GKGCMC	2 cut(s)	120, 1764
BamHI	GGATCC	1 cut(s)	1727
BanI	GGYRCC	1 cut(s)	1601
BauI	CACGAG	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	918, 1497
Bbv12I	GWGCWC	1 cut(s)	1764
BbvI	GCAGC	3 cut(s)	1308, 1311, 1612
BccI	CCATC	2 cut(s)	585, 866
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	5 cut(s)	126, 152, 814, 1259, 1649
BclI	TGATCA	2 cut(s)	1639, 1936
BcnI	CCSGG	2 cut(s)	1466, 1565
BcoDI	GTCTC	3 cut(s)	1366, 1703, 2042
BfaI	CTAG	5 cut(s)	729, 1308, 1428, 1455, 1838
BfmI	CTRYAG	1 cut(s)	942
BglI	GCCNNNNNGGC	1 cut(s)	1276
BglII	AGATCT	3 cut(s)	517, 992, 1745
BisI	GCNGC	4 cut(s)	1297, 1300, 1623, 1626
BlsI	GCNGC	4 cut(s)	1298, 1301, 1624, 1627
Bme1390I	CCNGG	7 cut(s)	126, 152, 814, 1259, 1466, 1565, 1649
Bme18I	GGWCC	2 cut(s)	1610, 1645
BmeT110I	CYCGRG	1 cut(s)	1273
BmgT120I	GGNCC	5 cut(s)	101, 1269, 1463, 1610, 1645
BmiI	GGNNCC	4 cut(s)	360, 1271, 1603, 1729
BmrFI	CCNGG	7 cut(s)	126, 152, 814, 1259, 1466, 1565, 1649
BmsI	GCATC	9 cut(s)	185, 622, 751, 1341, 1637, 1668, 1686, 1911, 1992
BpiI	GAAGAC	2 cut(s)	918, 1497
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	147
Bpu14I	TTCGAA	2 cut(s)	227, 442
BpuEI	CTTGAG	1 cut(s)	1297
BpuMI	CCSGG	2 cut(s)	1466, 1565
BsaAI	YACGTR	1 cut(s)	1996
BsaBI	GATNNNNATC	1 cut(s)	1976
BsaHI	GRCGYC	1 cut(s)	685
BsaJI	CCNNGG	9 cut(s)	150, 151, 209, 421, 566, 812, 1031, 1052, 1274
BsaWI	WCCGGW	2 cut(s)	355, 919
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	7 cut(s)	125, 426, 591, 972, 1460, 1563, 1564
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	6 cut(s)	174, 267, 940, 977, 1103, 1201
Bse3DI	GCAATG	1 cut(s)	1297
Bse8I	GATNNNNATC	1 cut(s)	1976
BseBI	CCWGG	5 cut(s)	126, 152, 814, 1259, 1649
BseDI	CCNNGG	9 cut(s)	150, 151, 209, 421, 566, 812, 1031, 1052, 1274
BseGI	GGATG	3 cut(s)	118, 596, 1018
BseJI	GATNNNNATC	1 cut(s)	1976
BseLI	CCNNNNNNNGG	7 cut(s)	125, 426, 591, 972, 1460, 1563, 1564
BseMI	GCAATG	1 cut(s)	1297
BseMII	CTCAG	3 cut(s)	308, 512, 1491
BseNI	ACTGG	6 cut(s)	174, 267, 940, 977, 1103, 1201
BseSI	GKGCMC	2 cut(s)	120, 1764
BseXI	GCAGC	3 cut(s)	1308, 1311, 1612
BsgI	GTGCAG	2 cut(s)	117, 1344
Bsh1236I	CGCG	1 cut(s)	568
BshFI	GGCC	7 cut(s)	103, 1036, 1123, 1270, 1339, 1464, 1622
BshNI	GGYRCC	1 cut(s)	1601
BsiHKAI	GWGCWC	1 cut(s)	1764
BsiHKCI	CYCGRG	1 cut(s)	1273
BsiSI	CCGG	7 cut(s)	356, 371, 920, 1037, 1466, 1564, 1957
BslI	CCNNNNNNNGG	7 cut(s)	125, 426, 591, 972, 1460, 1563, 1564
BsmAI	GTCTC	3 cut(s)	1366, 1703, 2042
BsnI	GGCC	7 cut(s)	103, 1036, 1123, 1270, 1339, 1464, 1622
BsoBI	CYCGRG	1 cut(s)	1273
Bsp119I	TTCGAA	2 cut(s)	227, 442
Bsp1286I	GDGCHC	2 cut(s)	120, 1764
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	4 cut(s)	200, 566, 568, 1623
BspANI	GGCC	7 cut(s)	103, 1036, 1123, 1270, 1339, 1464, 1622
BspCNI	CTCAG	3 cut(s)	307, 511, 1492
BspFNI	CGCG	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	4 cut(s)	360, 1271, 1603, 1729
BspPI	GGATC	5 cut(s)	226, 338, 1325, 1722, 1735
BspT104I	TTCGAA	2 cut(s)	227, 442
BspT107I	GGYRCC	1 cut(s)	1601
BsrDI	GCAATG	1 cut(s)	1297
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	6 cut(s)	174, 267, 940, 977, 1103, 1201
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	9 cut(s)	150, 151, 209, 421, 566, 812, 1031, 1052, 1274
BssNAI	GTATAC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	685
BssSI	CACGAG	1 cut(s)	36
BssT1I	CCWWGG	3 cut(s)	421, 1031, 1052
Bst1107I	GTATAC	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	36
Bst2UI	CCWGG	5 cut(s)	126, 152, 814, 1259, 1649
Bst4CI	ACNGT	5 cut(s)	1027, 1132, 1591, 1735, 1963
Bst6I	CTCTTC	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	685
BstBAI	YACGTR	1 cut(s)	1996
BstBI	TTCGAA	2 cut(s)	227, 442
BstC8I	GCNNGC	6 cut(s)	450, 464, 756, 884, 1721, 2018
BstDEI	CTNAG	5 cut(s)	294, 498, 1500, 1755, 2006
BstDSI	CCRYGG	2 cut(s)	421, 566
BstENI	CCTNNNNNAGG	1 cut(s)	1458
BstF5I	GGATG	3 cut(s)	118, 596, 1018
BstFNI	CGCG	1 cut(s)	568
BstHHI	GCGC	2 cut(s)	7, 888
BstMAI	GTCTC	3 cut(s)	1366, 1703, 2042
BstMWI	GCNNNNNNNGC	7 cut(s)	632, 770, 1254, 1276, 1296, 1308, 1477
BstNI	CCWGG	5 cut(s)	126, 152, 814, 1259, 1649
BstNSI	RCATGY	4 cut(s)	452, 886, 1022, 1768
BstSCI	CCNGG	7 cut(s)	124, 150, 812, 1257, 1464, 1563, 1647
BstSFI	CTRYAG	1 cut(s)	942
BstSLI	GKGCMC	2 cut(s)	120, 1764
BstSNI	TACGTA	1 cut(s)	1996
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	3 cut(s)	1308, 1311, 1612
BstV2I	GAAGAC	2 cut(s)	918, 1497
BstX2I	RGATCY	6 cut(s)	231, 517, 992, 1317, 1727, 1745
BstXI	CCANNNNNNTGG	2 cut(s)	619, 1250
BstYI	RGATCY	6 cut(s)	231, 517, 992, 1317, 1727, 1745
BstZ17I	GTATAC	1 cut(s)	75
BsuRI	GGCC	7 cut(s)	103, 1036, 1123, 1270, 1339, 1464, 1622
BtgI	CCRYGG	2 cut(s)	421, 566
BtgZI	GCGATG	1 cut(s)	1947
BtsCI	GGATG	3 cut(s)	118, 596, 1018
BtsI	GCAGTG	1 cut(s)	1234
BtsIMutI	CAGTG	6 cut(s)	726, 933, 970, 1234, 1596, 1731
Cac8I	GCNNGC	6 cut(s)	450, 464, 756, 884, 1721, 2018
CaiI	CAGNNNCTG	2 cut(s)	407, 1648
CciI	TCATGA	1 cut(s)	777
CfoI	GCGC	2 cut(s)	7, 888
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	5 cut(s)	101, 1269, 1463, 1610, 1645
Cfr42I	CCGCGG	1 cut(s)	569
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	4 cut(s)	353, 597, 1028, 1997
CviQI	GTAC	4 cut(s)	353, 597, 1028, 1997
DdeI	CTNAG	5 cut(s)	294, 498, 1500, 1755, 2006
DraI	TTTAAA	1 cut(s)	892
EaeI	YGGCCR	1 cut(s)	1620
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco105I	TACGTA	1 cut(s)	1996
Eco130I	CCWWGG	3 cut(s)	421, 1031, 1052
Eco147I	AGGCCT	1 cut(s)	1123
Eco32I	GATATC	1 cut(s)	726
Eco47I	GGWCC	2 cut(s)	1610, 1645
Eco57I	CTGAAG	4 cut(s)	538, 1019, 1257, 1494
Eco88I	CYCGRG	1 cut(s)	1273
EcoNI	CCTNNNNNAGG	1 cut(s)	1458
EcoO109I	RGGNCCY	3 cut(s)	101, 1610, 1645
EcoRII	CCWGG	5 cut(s)	124, 150, 812, 1257, 1647
EcoRV	GATATC	1 cut(s)	726
EcoT14I	CCWWGG	3 cut(s)	421, 1031, 1052
EcoT22I	ATGCAT	2 cut(s)	637, 744
ErhI	CCWWGG	3 cut(s)	421, 1031, 1052
FalI	AAGNNNNNCTT	4 cut(s)	536, 568, 1851, 1883
FauNDI	CATATG	1 cut(s)	159
FbaI	TGATCA	2 cut(s)	1639, 1936
FblI	GTMKAC	2 cut(s)	74, 1418
Fnu4HI	GCNGC	4 cut(s)	1297, 1300, 1623, 1626
FokI	GGATG	3 cut(s)	125, 603, 1025
Fsp4HI	GCNGC	4 cut(s)	1297, 1300, 1623, 1626
FspBI	CTAG	5 cut(s)	729, 1308, 1428, 1455, 1838
GlaI	GCGC	2 cut(s)	6, 887
GluI	GCNGC	4 cut(s)	1297, 1300, 1623, 1626
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	7 cut(s)	103, 1036, 1123, 1270, 1339, 1464, 1622
HapII	CCGG	7 cut(s)	356, 371, 920, 1037, 1466, 1564, 1957
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	2 cut(s)	7, 888
Hin1I	GRCGYC	1 cut(s)	685
Hin6I	GCGC	2 cut(s)	5, 886
HinP1I	GCGC	2 cut(s)	5, 886
HincII	GTYRAC	3 cut(s)	250, 563, 698
HindII	GTYRAC	3 cut(s)	250, 563, 698
HinfI	GANTC	9 cut(s)	20, 196, 314, 703, 914, 930, 980, 1382, 1502
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	7 cut(s)	356, 371, 920, 1037, 1466, 1564, 1957
HphI	GGTGA	4 cut(s)	641, 909, 1167, 1366
Hpy188III	TCNNGA	8 cut(s)	188, 341, 500, 778, 851, 1643, 1708, 2045
HpyAV	CCTTC	6 cut(s)	234, 723, 994, 1350, 1455, 1804
HpyCH4III	ACNGT	5 cut(s)	1027, 1132, 1591, 1735, 1963
HpyCH4IV	ACGT	1 cut(s)	1995
HpyF10VI	GCNNNNNNNGC	7 cut(s)	632, 770, 1254, 1276, 1296, 1308, 1477
HpyF3I	CTNAG	5 cut(s)	294, 498, 1500, 1755, 2006
HpySE526I	ACGT	1 cut(s)	1995
Hsp92I	GRCGYC	1 cut(s)	685
HspAI	GCGC	2 cut(s)	5, 886
Ksp22I	TGATCA	2 cut(s)	1639, 1936
KspAI	GTTAAC	1 cut(s)	250
KspI	CCGCGG	1 cut(s)	569
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	3 cut(s)	1308, 1311, 1612
LweI	GCATC	9 cut(s)	185, 622, 751, 1341, 1637, 1668, 1686, 1911, 1992
MaeI	CTAG	5 cut(s)	729, 1308, 1428, 1455, 1838
MaeII	ACGT	1 cut(s)	1995
MaeIII	GTNAC	2 cut(s)	17, 604
MflI	RGATCY	6 cut(s)	231, 517, 992, 1317, 1727, 1745
MhlI	GDGCHC	2 cut(s)	120, 1764
MlyI	GAGTC	5 cut(s)	14, 697, 908, 1376, 1511
MmeI	TCCRAC	1 cut(s)	518
Mph1103I	ATGCAT	2 cut(s)	637, 744
MseI	TTAA	8 cut(s)	216, 249, 543, 839, 891, 1088, 1367, 1830
MslI	CAYNNNNRTG	4 cut(s)	453, 528, 1757, 2038
MspA1I	CMGCKG	3 cut(s)	568, 1480, 1625
MspI	CCGG	7 cut(s)	356, 371, 920, 1037, 1466, 1564, 1957
MspR9I	CCNGG	7 cut(s)	126, 152, 814, 1259, 1466, 1565, 1649
MvaI	CCWGG	5 cut(s)	126, 152, 814, 1259, 1649
MvnI	CGCG	1 cut(s)	568
MwoI	GCNNNNNNNGC	7 cut(s)	632, 770, 1254, 1276, 1296, 1308, 1477
NciI	CCSGG	2 cut(s)	1466, 1565
NcoI	CCATGG	1 cut(s)	421
NdeI	CATATG	1 cut(s)	159
NlaIV	GGNNCC	4 cut(s)	360, 1271, 1603, 1729
NmuCI	GTSAC	2 cut(s)	17, 604
NsiI	ATGCAT	2 cut(s)	637, 744
NspI	RCATGY	4 cut(s)	452, 886, 1022, 1768
NspV	TTCGAA	2 cut(s)	227, 442
OliI	CACNNNNGTG	1 cut(s)	1757
PaeI	GCATGC	2 cut(s)	452, 886
PagI	TCATGA	1 cut(s)	777
PasI	CCCWGGG	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	1123
PfeI	GAWTC	4 cut(s)	196, 314, 930, 980
PflMI	CCANNNNNTGG	1 cut(s)	591
PfoI	TCCNGGA	2 cut(s)	124, 1563
PkrI	GCNGC	4 cut(s)	1298, 1301, 1624, 1627
PleI	GAGTC	5 cut(s)	14, 697, 908, 1376, 1510
PpsI	GAGTC	5 cut(s)	14, 697, 908, 1376, 1510
Ppu21I	YACGTR	1 cut(s)	1996
PpuMI	RGGWCCY	2 cut(s)	1610, 1645
PshBI	ATTAAT	1 cut(s)	1830
Psp5II	RGGWCCY	2 cut(s)	1610, 1645
Psp6I	CCWGG	5 cut(s)	124, 150, 812, 1257, 1647
PspGI	CCWGG	5 cut(s)	124, 150, 812, 1257, 1647
PspN4I	GGNNCC	4 cut(s)	360, 1271, 1603, 1729
PspPI	GGNCC	5 cut(s)	101, 1269, 1463, 1610, 1645
PspPPI	RGGWCCY	2 cut(s)	1610, 1645
PsrI	GAACNNNNNNTAC	2 cut(s)	1065, 1097
PstNI	CAGNNNCTG	2 cut(s)	407, 1648
PsuI	RGATCY	6 cut(s)	231, 517, 992, 1317, 1727, 1745
PvuII	CAGCTG	1 cut(s)	1480
RsaI	GTAC	4 cut(s)	354, 598, 1029, 1998
RsaNI	GTAC	4 cut(s)	353, 597, 1028, 1997
RseI	CAYNNNNRTG	4 cut(s)	453, 528, 1757, 2038
SacII	CCGCGG	1 cut(s)	569
SaqAI	TTAA	8 cut(s)	216, 249, 543, 839, 891, 1088, 1367, 1830
SatI	GCNGC	4 cut(s)	1297, 1300, 1623, 1626
Sau96I	GGNCC	5 cut(s)	101, 1269, 1463, 1610, 1645
SchI	GAGTC	5 cut(s)	14, 697, 908, 1376, 1511
ScrFI	CCNGG	7 cut(s)	126, 152, 814, 1259, 1466, 1565, 1649
SduI	GDGCHC	2 cut(s)	120, 1764
SfaNI	GCATC	9 cut(s)	185, 622, 751, 1341, 1637, 1668, 1686, 1911, 1992
SfcI	CTRYAG	1 cut(s)	942
Sfr303I	CCGCGG	1 cut(s)	569
SfuI	TTCGAA	2 cut(s)	227, 442
SgrBI	CCGCGG	1 cut(s)	569
SinI	GGWCC	2 cut(s)	1610, 1645
SmiMI	CAYNNNNRTG	4 cut(s)	453, 528, 1757, 2038
SmlI	CTYRAG	1 cut(s)	1312
SmoI	CTYRAG	1 cut(s)	1312
SnaBI	TACGTA	1 cut(s)	1996
SphI	GCATGC	2 cut(s)	452, 886
SseBI	AGGCCT	1 cut(s)	1123
SsiI	CCGC	4 cut(s)	200, 566, 568, 1623
SspMI	CTAG	5 cut(s)	729, 1308, 1428, 1455, 1838
StuI	AGGCCT	1 cut(s)	1123
StyD4I	CCNGG	7 cut(s)	124, 150, 812, 1257, 1464, 1563, 1647
StyI	CCWWGG	3 cut(s)	421, 1031, 1052
TaaI	ACNGT	5 cut(s)	1027, 1132, 1591, 1735, 1963
TaiI	ACGT	1 cut(s)	1998
TaqI	TCGA	4 cut(s)	227, 442, 1209, 1707
TatI	WGTACW	1 cut(s)	596
TauI	GCSGC	1 cut(s)	1625
TfiI	GAWTC	4 cut(s)	196, 314, 930, 980
Tru1I	TTAA	8 cut(s)	216, 249, 543, 839, 891, 1088, 1367, 1830
Tru9I	TTAA	8 cut(s)	216, 249, 543, 839, 891, 1088, 1367, 1830
TscAI	CASTG	6 cut(s)	726, 940, 977, 1234, 1596, 1738
TseFI	GTSAC	2 cut(s)	17, 604
TseI	GCWGC	3 cut(s)	1296, 1299, 1625
Tsp45I	GTSAC	2 cut(s)	17, 604
TspDTI	ATGAA	6 cut(s)	15, 494, 512, 705, 1029, 1134
TspGWI	ACGGA	1 cut(s)	1074
TspRI	CASTG	6 cut(s)	726, 940, 977, 1234, 1596, 1738
Van91I	CCANNNNNTGG	1 cut(s)	591
VneI	GTGCAC	1 cut(s)	1760
VpaK11BI	GGWCC	2 cut(s)	1610, 1645
VspI	ATTAAT	1 cut(s)	1830
XagI	CCTNNNNNAGG	1 cut(s)	1458
XapI	RAATTY	2 cut(s)	539, 2026
XceI	RCATGY	4 cut(s)	452, 886, 1022, 1768
XcmI	CCANNNNNNNNNTGG	2 cut(s)	830, 1881
XmiI	GTMKAC	2 cut(s)	74, 1418
XspI	CTAG	5 cut(s)	729, 1308, 1428, 1455, 1838
Zsp2I	ATGCAT	2 cut(s)	637, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.