AT2G46530

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
19104632 .. 19108486
3855 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46530.3

Sequence Viewer

Length: 1806 bp
ATGGCGAATGTGGAAGCTGATTTCAGAACATCAGGGTCTAATGATGATGAATTGTACACGGAGCTATGGAAAGCTTGTGCAGGGCCACTTGTGGAAGTTCCTCGTTATGGTGAAAGAGTTTTCTACTTCCCTCAAGGTCACATGGAACAATTGGTTGCTTCGACTAATCAAGGAGTTGTTGATCAAGAGATACCAGTGTTTAATCTTCCTCCAAAGATACTTTGTCGTGTTCTTAGTGTTACGTTAAAAGCAGAACATGAGACCGATGAGGTTTACGCTCAGATCACATTACAACCAGAAGAAGATCAAAGTGAACCAACAAGTCTTGACCCACCTTTAGTAGAACCAGCTAAACCAACGGTTGATTCTTTTGTGAAGATTCTAACAGCTTCAGATACAAGCACACATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCTTCACTTGATATGACACAACCTACACCGACTCAAGAACTTGTAGCTAGAGATCTTCACGGCTATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCGAGGAGGCATTTACTTACAACCGGTTGGAGTACATTTGTAACCTCGAAAAGACTTGTAGCTGGAGATGCATTTGTGTTCTTGAGGGGTGAAACCGGGGATTTACGGGTTGGTGTGAGGCGTTTAGCTAAGCAGCAAAGCACGATGCCCGCATCCGTTATTTCGAGTCAGAGTATGCGTTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTTACCACAACAACTATATTTGTTGTCTTCTATAAACCAAGGATAAGCCAGTTTATAATTAGTGTGAACAAGTATATGATGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGGTATAGGATGAGATTCGAAGGAGAAGAGTCTCCTGAGAGAATATTTACAGGTACCATTATTGGCAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGAGGTCATTGCAGATCCAATGGGACGAGCCATCTTCTATACAGAGACCAAACAAGGTCTCACCGTGGGAGATCGAGCCTTTCTCACCATCCGCGCTTACACCAACCCCTACTCAACAACAATCAAAGTCCAAACGGTCCAGACCAATCTCAGAAATCACAGGGAGTCCTGTAGCTTCTAGTTTCTTGAGTAGTTTCTCGCAGAGCCACGAGTCTAATCCATCGGTCAAACTGTTGTTTCAAGATCCAGCAACCGAGAGAAACTCAAACAAATCAGTGTTTTCAAGTGGATTACAATGCAAGATAACCGAGGCTCCGGTCACAAGTAGTTGTAGGTTATTCGGATTCGATCTCACGAGCAAGCCTGCTTCTGCTACAATTCCTCATGACAAGCAGCTAATAAGTGTGGATTCAAATATATCTGATTCTACCACCAAGTGTCAAGATCCTAACTCTTCAAACTCACCAAAAGAGCAGAAACAACAAACATCCACAAGAAGCCGAATCAAGGTGCAAATGCAAGGAACAGCGGTTGGACGCGCGGTTGATTTAACATTGTTGAGATCATACGATGAACTAATAAAAGAGCTAGAGAAAATGTTTGAGATTGAAGGAGAACTTAGTCCTAAAGACAAATGGGCTATCGTGTTTACAGACGATGAAGGAGATAGGATGCTTGTAGGAGATGATCCATGGAATGAGTTCTGTAAAATGGCAAAGAAGTTATTCATATATCCGAGTGATGAGGTCAAGAAAATGAGGTCGAAGTCGTTGTTGGGTGATAAAGGTACGATCGTAAATCTTGAATCAGATCAGAGGACAGTTCACGTTTAA

Protein Analysis

601

Amino Acids

67.23

Weight (kDa)

6.63

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 145 - 245 2.7e-22 B3 DNA binding domain
BRWD_AD PF25313 276 - 373 6.9e-09 BRWD/PHIP ancillary domain-like domain
ARF_AD PF06507 292 - 373 2.5e-33 Auxin response factor ancillary domain
AUX_IAA PF02309 497 - 547 1.2e-08 AUX/IAA family
AUX_IAA PF02309 557 - 593 2.4e-06 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 815
Acc65I GGTACC 1 cut(s) 923
AccB1I GGYRCC 1 cut(s) 923
AccII CGCG 3 cut(s) 1067, 1512, 1514
AciI CCGC 5 cut(s) 699, 871, 1065, 1502, 1514
AclWI GGATC 4 cut(s) 982, 1211, 1412, 1655
AcoI YGGCCR 1 cut(s) 959
AcuI CTGAAG 1 cut(s) 375
AdeI CACNNNGTG 3 cut(s) 410, 444, 1410
AfaI GTAC 4 cut(s) 56, 583, 925, 1762
AfiI CCNNNNNNNGG 3 cut(s) 107, 975, 1480
AgeI ACCGGT 1 cut(s) 572
AgsI TTSAA 6 cut(s) 1214, 1257, 1386, 1431, 1583, 1778
AjuI GAANNNNNNNTTGG 4 cut(s) 349, 381, 1730, 1762
AloI GAACNNNNNNTCC 2 cut(s) 405, 437
Alw26I GTCTC 4 cut(s) 254, 906, 1012, 1036
AlwI GGATC 4 cut(s) 982, 1211, 1412, 1655
AoxI GGCC 2 cut(s) 83, 959
ApeKI GCWGC 2 cut(s) 682, 1366
AsiGI ACCGGT 1 cut(s) 572
Asp700I GAANNNNTTC 2 cut(s) 1673, 1697
Asp718I GGTACC 1 cut(s) 923
AspLEI GCGC 2 cut(s) 1069, 1514
AspS9I GGNCC 2 cut(s) 83, 1110
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 6 cut(s) 122, 650, 1026, 1050, 1428, 1763
AsuII TTCGAA 1 cut(s) 888
AvaII GGWCC 1 cut(s) 1110
BaeI ACNNNNGTAYC 4 cut(s) 182, 215, 1752, 1785
BalI TGGCCA 1 cut(s) 961
BanI GGYRCC 1 cut(s) 923
BauI CACGAG 2 cut(s) 1181, 1327
BbsI GAAGAC 1 cut(s) 778
BbvI GCAGC 2 cut(s) 694, 1378
BccI CCATC 4 cut(s) 832, 1012, 1069, 1201
BceAI ACGGC 1 cut(s) 526
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 4 cut(s) 254, 906, 1012, 1036
BfaI CTAG 3 cut(s) 498, 1152, 1562
BfmI CTRYAG 2 cut(s) 744, 1143
BglII AGATCT 2 cut(s) 502, 943
BisI GCNGC 2 cut(s) 683, 1367
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 2 cut(s) 684, 1368
Bme1390I CCNGG 1 cut(s) 646
Bme18I GGWCC 1 cut(s) 1110
BmgT120I GGNCC 2 cut(s) 83, 1110
BmiI GGNNCC 2 cut(s) 925, 1287
BmrFI CCNGG 1 cut(s) 646
BmsI GCATC 4 cut(s) 607, 684, 710, 1635
BpiI GAAGAC 1 cut(s) 778
BplI GAGNNNNNCTC 4 cut(s) 1040, 1072, 1220, 1252
BpmI CTGGAG 1 cut(s) 633
Bpu1102I GCTNAGC 1 cut(s) 678
Bpu14I TTCGAA 1 cut(s) 888
BpuEI CTTGAG 4 cut(s) 117, 468, 652, 1180
BpuMI CCSGG 1 cut(s) 646
BsaI GGTCTC 3 cut(s) 254, 1012, 1036
BsaJI CCNNGG 6 cut(s) 551, 645, 797, 1037, 1281, 1664
BsaWI WCCGGW 2 cut(s) 572, 1288
BsaXI ACNNNNNCTCC 2 cut(s) 1270, 1300
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 975, 1480
Bse118I RCCGGY 1 cut(s) 572
Bse1I ACTGG 2 cut(s) 194, 808
Bse3DI GCAATG 1 cut(s) 980
BseDI CCNNGG 6 cut(s) 551, 645, 797, 1037, 1281, 1664
BseGI GGATG 5 cut(s) 701, 885, 1061, 1460, 1650
BseLI CCNNNNNNNGG 3 cut(s) 107, 975, 1480
BseMI GCAATG 1 cut(s) 980
BseMII CTCAG 4 cut(s) 293, 432, 897, 1137
BseNI ACTGG 2 cut(s) 194, 808
BseRI GAGGAG 1 cut(s) 568
BseXI GCAGC 2 cut(s) 694, 1378
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 3 cut(s) 1067, 1512, 1514
Bsh1285I CGRYCG 1 cut(s) 1767
BshFI GGCC 2 cut(s) 85, 961
BshNI GGYRCC 1 cut(s) 923
BshTI ACCGGT 1 cut(s) 572
BsiEI CGRYCG 1 cut(s) 1767
BsiSI CCGG 3 cut(s) 573, 645, 1289
BslFI GGGAC 1 cut(s) 1010
BslI CCNNNNNNNGG 3 cut(s) 107, 975, 1480
BsmAI GTCTC 4 cut(s) 254, 906, 1012, 1036
BsmFI GGGAC 1 cut(s) 1010
BsnI GGCC 2 cut(s) 85, 961
Bso31I GGTCTC 3 cut(s) 254, 1012, 1036
Bsp119I TTCGAA 1 cut(s) 888
Bsp1407I TGTACA 1 cut(s) 54
Bsp1720I GCTNAGC 1 cut(s) 678
Bsp19I CCATGG 1 cut(s) 1664
BspACI CCGC 5 cut(s) 699, 871, 1065, 1502, 1514
BspANI GGCC 2 cut(s) 85, 961
BspCNI CTCAG 4 cut(s) 292, 433, 898, 1136
BspFNI CGCG 3 cut(s) 1067, 1512, 1514
BspHI TCATGA 1 cut(s) 1357
BspLI GGNNCC 2 cut(s) 925, 1287
BspPI GGATC 4 cut(s) 982, 1211, 1412, 1655
BspT104I TTCGAA 1 cut(s) 888
BspT107I GGYRCC 1 cut(s) 923
BspTNI GGTCTC 3 cut(s) 254, 1012, 1036
BsrDI GCAATG 1 cut(s) 980
BsrFI RCCGGY 1 cut(s) 572
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 2 cut(s) 194, 808
BssAI RCCGGY 1 cut(s) 572
BssECI CCNNGG 6 cut(s) 551, 645, 797, 1037, 1281, 1664
BssSI CACGAG 2 cut(s) 1181, 1327
BssT1I CCWWGG 2 cut(s) 797, 1664
Bst2BI CACGAG 2 cut(s) 1181, 1327
Bst4CI ACNGT 5 cut(s) 361, 1038, 1110, 1206, 1795
Bst6I CTCTTC 2 cut(s) 891, 1432
BstAUI TGTACA 1 cut(s) 54
BstBI TTCGAA 1 cut(s) 888
BstC8I GCNNGC 4 cut(s) 699, 963, 1334, 1338
BstDEI CTNAG 7 cut(s) 233, 279, 441, 678, 906, 1123, 1592
BstDSI CCRYGG 2 cut(s) 1037, 1664
BstF5I GGATG 5 cut(s) 701, 885, 1061, 1460, 1650
BstFNI CGCG 3 cut(s) 1067, 1512, 1514
BstHHI GCGC 2 cut(s) 1069, 1514
BstMAI GTCTC 4 cut(s) 254, 906, 1012, 1036
BstMCI CGRYCG 1 cut(s) 1767
BstMWI GCNNNNNNNGC 2 cut(s) 617, 755
BstSCI CCNGG 1 cut(s) 644
BstSFI CTRYAG 2 cut(s) 744, 1143
BstUI CGCG 3 cut(s) 1067, 1512, 1514
BstV1I GCAGC 2 cut(s) 694, 1378
BstV2I GAAGAC 1 cut(s) 778
BstX2I RGATCY 5 cut(s) 502, 943, 987, 1216, 1417
BstYI RGATCY 5 cut(s) 502, 943, 987, 1216, 1417
BsuRI GGCC 2 cut(s) 85, 961
BtgI CCRYGG 2 cut(s) 1037, 1664
BtgZI GCGATG 1 cut(s) 857
BtsCI GGATG 5 cut(s) 701, 885, 1061, 1460, 1650
BtsI GCAGTG 1 cut(s) 943
BtsIMutI CAGTG 4 cut(s) 201, 438, 943, 1254
Cac8I GCNNGC 4 cut(s) 699, 963, 1334, 1338
CciI TCATGA 1 cut(s) 1357
CfoI GCGC 2 cut(s) 1069, 1514
Cfr10I RCCGGY 1 cut(s) 572
Cfr13I GGNCC 2 cut(s) 83, 1110
CseI GACGC 1 cut(s) 1518
Csp6I GTAC 4 cut(s) 55, 582, 924, 1761
CspAI ACCGGT 1 cut(s) 572
CviAII CATG 6 cut(s) 142, 257, 407, 755, 1358, 1665
CviQI GTAC 4 cut(s) 55, 582, 924, 1761
DdeI CTNAG 7 cut(s) 233, 279, 441, 678, 906, 1123, 1592
DraIII CACNNNGTG 3 cut(s) 410, 444, 1410
EaeI YGGCCR 1 cut(s) 959
Eam1104I CTCTTC 2 cut(s) 891, 1432
EarI CTCTTC 2 cut(s) 891, 1432
Eco130I CCWWGG 2 cut(s) 797, 1664
Eco31I GGTCTC 3 cut(s) 254, 1012, 1036
Eco47I GGWCC 1 cut(s) 1110
Eco57I CTGAAG 1 cut(s) 375
EcoT14I CCWWGG 2 cut(s) 797, 1664
EcoT22I ATGCAT 1 cut(s) 622
ErhI CCWWGG 2 cut(s) 797, 1664
FaeI CATG 6 cut(s) 145, 260, 410, 758, 1361, 1668
FalI AAGNNNNNCTT 2 cut(s) 1575, 1607
FaqI GGGAC 1 cut(s) 1010
FatI CATG 6 cut(s) 141, 256, 406, 754, 1357, 1664
FauI CCCGC 1 cut(s) 706
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 683, 1367
FokI GGATG 5 cut(s) 688, 892, 1048, 1447, 1657
Fsp4HI GCNGC 2 cut(s) 683, 1367
FspBI CTAG 3 cut(s) 498, 1152, 1562
GlaI GCGC 2 cut(s) 1068, 1513
GluI GCNGC 2 cut(s) 683, 1367
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 2 cut(s) 85, 961
HapII CCGG 3 cut(s) 573, 645, 1289
HgaI GACGC 1 cut(s) 1518
HhaI GCGC 2 cut(s) 1069, 1514
Hin1II CATG 6 cut(s) 145, 260, 410, 758, 1361, 1668
Hin6I GCGC 2 cut(s) 1067, 1512
HinP1I GCGC 2 cut(s) 1067, 1512
HindIII AAGCTT 1 cut(s) 72
HpaII CCGG 3 cut(s) 573, 645, 1289
HphI GGTGA 6 cut(s) 122, 650, 1026, 1050, 1428, 1763
Hpy166II GTNNAC 8 cut(s) 57, 274, 314, 431, 449, 826, 1623, 1798
Hpy8I GTNNAC 8 cut(s) 57, 274, 314, 431, 449, 826, 1623, 1798
HpyAV CCTTC 4 cut(s) 462, 884, 1577, 1628
HpyCH4III ACNGT 5 cut(s) 361, 1038, 1110, 1206, 1795
HpyCH4IV ACGT 2 cut(s) 242, 1800
HpyCH4V TGCA 6 cut(s) 80, 620, 985, 1272, 1486, 1492
HpyF10VI GCNNNNNNNGC 2 cut(s) 617, 755
HpyF3I CTNAG 7 cut(s) 233, 279, 441, 678, 906, 1123, 1592
HpySE526I ACGT 2 cut(s) 242, 1800
Hsp92II CATG 6 cut(s) 145, 260, 410, 758, 1361, 1668
HspAI GCGC 2 cut(s) 1067, 1512
KpnI GGTACC 1 cut(s) 927
Ksp22I TGATCA 1 cut(s) 181
LmnI GCTCC 2 cut(s) 61, 1291
Lsp1109I GCAGC 2 cut(s) 694, 1378
LweI GCATC 4 cut(s) 607, 684, 710, 1635
MaeI CTAG 3 cut(s) 498, 1152, 1562
MaeII ACGT 2 cut(s) 242, 1800
MaeIII GTNAC 5 cut(s) 137, 238, 589, 760, 1291
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 5 cut(s) 502, 943, 987, 1216, 1417
MlsI TGGCCA 1 cut(s) 961
MluCI AATT 4 cut(s) 50, 149, 816, 1350
MluNI TGGCCA 1 cut(s) 961
MlyI GAGTC 5 cut(s) 475, 724, 908, 1147, 1193
MmeI TCCRAC 2 cut(s) 557, 1486
Mox20I TGGCCA 1 cut(s) 961
Mph1103I ATGCAT 1 cut(s) 622
MroXI GAANNNNTTC 2 cut(s) 1673, 1697
MscI TGGCCA 1 cut(s) 961
MseI TTAA 5 cut(s) 201, 245, 528, 1523, 1804
MslI CAYNNNNRTG 1 cut(s) 513
Msp20I TGGCCA 1 cut(s) 961
MspA1I CMGCKG 1 cut(s) 1502
MspI CCGG 3 cut(s) 573, 645, 1289
MspR9I CCNGG 1 cut(s) 646
MunI CAATTG 1 cut(s) 149
MvnI CGCG 3 cut(s) 1067, 1512, 1514
MwoI GCNNNNNNNGC 2 cut(s) 617, 755
NciI CCSGG 1 cut(s) 646
NcoI CCATGG 1 cut(s) 1664
NlaIII CATG 6 cut(s) 145, 260, 410, 758, 1361, 1668
NlaIV GGNNCC 2 cut(s) 925, 1287
NmuCI GTSAC 2 cut(s) 137, 1291
NsiI ATGCAT 1 cut(s) 622
NspV TTCGAA 1 cut(s) 888
PagI TCATGA 1 cut(s) 1357
PdmI GAANNNNTTC 2 cut(s) 1673, 1697
PfeI GAWTC 9 cut(s) 365, 379, 414, 885, 1317, 1382, 1397, 1476, 1778
PinAI ACCGGT 1 cut(s) 572
PkrI GCNGC 2 cut(s) 684, 1368
Ple19I CGATCG 1 cut(s) 1767
PleI GAGTC 5 cut(s) 475, 723, 907, 1146, 1192
PpsI GAGTC 5 cut(s) 475, 723, 907, 1146, 1192
PsiI TTATAA 1 cut(s) 815
PspN4I GGNNCC 2 cut(s) 925, 1287
PspPI GGNCC 2 cut(s) 83, 1110
PsuI RGATCY 5 cut(s) 502, 943, 987, 1216, 1417
PvuI CGATCG 1 cut(s) 1767
RsaI GTAC 4 cut(s) 56, 583, 925, 1762
RsaNI GTAC 4 cut(s) 55, 582, 924, 1761
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 5 cut(s) 201, 245, 528, 1523, 1804
SatI GCNGC 2 cut(s) 683, 1367
Sau96I GGNCC 2 cut(s) 83, 1110
SchI GAGTC 5 cut(s) 475, 724, 908, 1147, 1193
ScrFI CCNGG 1 cut(s) 646
SfaNI GCATC 4 cut(s) 607, 684, 710, 1635
SfcI CTRYAG 2 cut(s) 744, 1143
SfuI TTCGAA 1 cut(s) 888
SinI GGWCC 1 cut(s) 1110
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 4 cut(s) 132, 483, 631, 1159
SmoI CTYRAG 4 cut(s) 132, 483, 631, 1159
Sse9I AATT 4 cut(s) 50, 149, 816, 1350
SsiI CCGC 5 cut(s) 699, 871, 1065, 1502, 1514
SspI AATATT 1 cut(s) 915
SspMI CTAG 3 cut(s) 498, 1152, 1562
StyD4I CCNGG 1 cut(s) 644
StyI CCWWGG 2 cut(s) 797, 1664
TaaI ACNGT 5 cut(s) 361, 1038, 1110, 1206, 1795
TaiI ACGT 2 cut(s) 245, 1803
TaqI TCGA 7 cut(s) 161, 596, 713, 888, 1047, 1320, 1736
TaqII GACCGA 2 cut(s) 278, 1186
TasI AATT 4 cut(s) 50, 149, 816, 1350
TatI WGTACW 2 cut(s) 54, 581
TfiI GAWTC 9 cut(s) 365, 379, 414, 885, 1317, 1382, 1397, 1476, 1778
Tru1I TTAA 5 cut(s) 201, 245, 528, 1523, 1804
Tru9I TTAA 5 cut(s) 201, 245, 528, 1523, 1804
TscAI CASTG 4 cut(s) 201, 445, 943, 1254
TseFI GTSAC 2 cut(s) 137, 1291
TseI GCWGC 2 cut(s) 682, 1366
Tsp45I GTSAC 2 cut(s) 137, 1291
TspDTI ATGAA 6 cut(s) 63, 531, 860, 1560, 1647, 1690
TspGWI ACGGA 2 cut(s) 74, 694
TspRI CASTG 4 cut(s) 201, 445, 943, 1254
VpaK11BI GGWCC 1 cut(s) 1110
XcmI CCANNNNNNNNNTGG 1 cut(s) 969
XmnI GAANNNNTTC 2 cut(s) 1673, 1697
XspI CTAG 3 cut(s) 498, 1152, 1562
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.