Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0019081

Physical Location & Seq

Genomic Coordinates Reverse (-)

22247343 .. 22247727

Gene Structure 385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028398

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCTCACCACTGGTTTCCAAGCTACCAATCTAGGAGAAGCCATCGAAGTCGTCAACCAAATGGTAGATTGGATGCTGGCAGATGAGGCTGTAGCTGAAGATAGTGGTGAGGAGGAGAGGGATGGGAAGTTTAGAGAGTCAGTGAAGTGTAAAGTGTTTTTGGGTTTCACTTCGAATTTGGTTTCGTTTGGGCTTAGAGATGTGTTTAGGTGCTTGGTGGACAGTCGCACCAGTGGCAGTACGCGGAGACTTTCTTTGCCAATGCGTCATCGAAATGGCTCCAATCCTCCAGCCTATCACGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

102

Amino Acids

11.24

Weight (kDa)

5.63

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DS	PF01916	1 - 76	1e-12	Deoxyhypusine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0019081)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000028398
rosa_multiflora	Rmu_sc0001144.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034370 Rroxscaffold_4G00303700 Rroxscaffold_6G00397550 Rroxscaffold_7G00190850
rosa_rugosa	Rorug02G0028200
rosa_samantha	Rh1AG233800 Rh1CG218400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	244
AciI	CCGC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	300
AluBI	AGCT	2 cut(s)	23, 95
AluI	AGCT	2 cut(s)	23, 95
Alw26I	GTCTC	1 cut(s)	241
ApoI	RAATTY	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	173
BccI	CCATC	2 cut(s)	50, 116
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	280
BmsI	GCATC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	2 cut(s)	16, 231
BseGI	GGATG	2 cut(s)	78, 127
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	16, 231
BseRI	GAGGAG	2 cut(s)	125, 128
Bsh1236I	CGCG	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	173
BspACI	CCGC	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	280
BspT104I	TTCGAA	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	16, 231
Bst4CI	ACNGT	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	78, 127
BstFNI	CGCG	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 234
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	78, 127
BtsIMutI	CAGTG	3 cut(s)	9, 147, 238
Cac8I	GCNNGC	1 cut(s)	78
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	240
CviJI	RGCY	7 cut(s)	23, 41, 89, 95, 193, 279, 293
CviKI_1	RGCY	7 cut(s)	23, 41, 89, 95, 193, 279, 293
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	117
FokI	GGATG	2 cut(s)	85, 134
FspBI	CTAG	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	137
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	55, 220
Hpy8I	GTNNAC	2 cut(s)	55, 220
HpyCH4III	ACNGT	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 234
HpyF3I	CTNAG	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	2 cut(s)	62, 244
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	32
MboII	GAAGA	1 cut(s)	110
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	79, 103, 106, 111, 297
MslI	CAYNNNNRTG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	86, 234
NlaIV	GGNNCC	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	173
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	280
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	1 cut(s)	273
SchI	GAGTC	1 cut(s)	146
SetI	ASST	3 cut(s)	25, 97, 212
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	173
SgeI	CNNG	8 cut(s)	24, 32, 44, 89, 226, 243, 255, 302
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	45, 173, 271
TasI	AATT	1 cut(s)	175
TscAI	CASTG	3 cut(s)	16, 147, 238
TspRI	CASTG	3 cut(s)	16, 147, 238
XapI	RAATTY	1 cut(s)	175
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.