Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0019081

Physical Location & Seq

Genomic Coordinates Reverse (-)

24087240 .. 24089063

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCTCACCACTAGTTTCCAAGCTACGAATCTCGGAGAAGCCACCGAAGTTGTCAACCAAATGTGGGACCGTGTAGGTAGATTGGAGGTGGCAAATGAGGCTATAGGCGAAGATAGTGGTGAGGAGGAGAGGGATGGGAAGTTTAGAGAGTCGGTGAAGTGTAAAGTGTTTTTGGGTTTTACTTCGAATTTGTTTTCGTCGGGCTTAGAGATGTGTTTAGGTGCTTGGTGGACCGTCGCACTAGTGGTAGTACGCGGAGACTTTCTTTGCCAATGCGTAGTCGAAATGGCTCCAATCCTCCAGCCTATCACATGTGACATTTGCGACGGTCGTCGTTTTTTACTTAAGCGAAATCTTGGAGGCTCAAGGCCACATTCTAAGGGCCACCGGCCGAAGGACAACCACGGCAAGGTTTGCACCACCAAAGGCCCCGGGGATCGCGATGATCGGGCTCGTCGCCCACACCGCCATTCAATTCTACGACATGCGGGACCGGCTTGGATACGACCAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

171

Amino Acids

19.09

Weight (kDa)

8.77

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DS	PF01916	1 - 72	3.4e-08	Deoxyhypusine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019081)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000028398
rosa_multiflora	Rmu_sc0001144.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034370 Rroxscaffold_4G00303700 Rroxscaffold_6G00397550 Rroxscaffold_7G00190850
rosa_rugosa	Rorug02G0028200
rosa_samantha	Rh1AG233800 Rh1CG218400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	255, 441
AciI	CCGC	3 cut(s)	255, 466, 488
AclWI	GGATC	1 cut(s)	444
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	187
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	64, 394, 409
AflII	CTTAAG	1 cut(s)	344
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	474
AhlI	ACTAGT	2 cut(s)	11, 241
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	444
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	4 cut(s)	368, 382, 389, 427
ApoI	RAATTY	1 cut(s)	187
AspS9I	GGNCC	5 cut(s)	67, 231, 382, 428, 491
AsuC2I	CCSGG	2 cut(s)	432, 433
AsuHPI	GGTGA	2 cut(s)	131, 166
AsuII	TTCGAA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	3 cut(s)	67, 231, 491
BanII	GRGCYC	1 cut(s)	454
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	421
BciVI	GTATCC	1 cut(s)	495
BcnI	CCSGG	2 cut(s)	432, 433
BcoDI	GTCTC	1 cut(s)	252
BcuI	ACTAGT	2 cut(s)	11, 241
BfaI	CTAG	3 cut(s)	12, 242, 514
BfmI	CTRYAG	1 cut(s)	102
BfrI	CTTAAG	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	495
Bme1390I	CCNGG	2 cut(s)	432, 433
Bme18I	GGWCC	3 cut(s)	67, 231, 491
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	5 cut(s)	67, 231, 382, 428, 491
BmiI	GGNNCC	4 cut(s)	68, 291, 430, 492
BmrFI	CCNGG	2 cut(s)	432, 433
BoxI	GACNNNNGTC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	284
Bpu14I	TTCGAA	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	349
BpuMI	CCSGG	2 cut(s)	432, 433
BsaJI	CCNNGG	4 cut(s)	403, 430, 431, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 394, 409
Bse118I	RCCGGY	2 cut(s)	387, 493
BseDI	CCNNGG	4 cut(s)	403, 430, 431, 432
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	3 cut(s)	64, 394, 409
BseRI	GAGGAG	2 cut(s)	137, 140
BseX3I	CGGCCG	1 cut(s)	389
Bsh1236I	CGCG	2 cut(s)	255, 441
Bsh1285I	CGRYCG	2 cut(s)	331, 392
BshFI	GGCC	4 cut(s)	370, 384, 391, 429
BsiEI	CGRYCG	2 cut(s)	331, 392
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	3 cut(s)	388, 432, 494
BslFI	GGGAC	2 cut(s)	80, 504
BslI	CCNNNNNNNGG	3 cut(s)	64, 394, 409
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	2 cut(s)	80, 504
BsnI	GGCC	4 cut(s)	370, 384, 391, 429
BsoBI	CYCGRG	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	2 cut(s)	436, 445
Bsp68I	TCGCGA	1 cut(s)	441
BspACI	CCGC	3 cut(s)	255, 466, 488
BspANI	GGCC	4 cut(s)	370, 384, 391, 429
BspFNI	CGCG	2 cut(s)	255, 441
BspLI	GGNNCC	4 cut(s)	68, 291, 430, 492
BspPI	GGATC	1 cut(s)	444
BspT104I	TTCGAA	1 cut(s)	185
BspTI	CTTAAG	1 cut(s)	344
BsrFI	RCCGGY	2 cut(s)	387, 493
BssAI	RCCGGY	2 cut(s)	387, 493
BssECI	CCNNGG	4 cut(s)	403, 430, 431, 432
BssMI	GATC	2 cut(s)	436, 445
Bst4CI	ACNGT	3 cut(s)	71, 235, 329
BstAFI	CTTAAG	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstBI	TTCGAA	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	205, 378
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	2 cut(s)	255, 441
BstKTI	GATC	2 cut(s)	439, 448
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	2 cut(s)	436, 445
BstMCI	CGRYCG	2 cut(s)	331, 392
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 414, 465, 494
BstNSI	RCATGY	2 cut(s)	315, 488
BstPAI	GACNNNNGTC	1 cut(s)	330
BstSCI	CCNGG	2 cut(s)	430, 431
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	2 cut(s)	255, 441
BstZI	CGGCCG	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	4 cut(s)	370, 384, 391, 429
BtgI	CCRYGG	1 cut(s)	403
BtgZI	GCGATG	1 cut(s)	456
BtsCI	GGATG	1 cut(s)	139
BtuMI	TCGCGA	1 cut(s)	441
Cfr10I	RCCGGY	2 cut(s)	387, 493
Cfr13I	GGNCC	5 cut(s)	67, 231, 382, 428, 491
Cfr9I	CCCGGG	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	2 cut(s)	312, 485
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	205, 378
DpnI	GATC	2 cut(s)	438, 447
DpnII	GATC	2 cut(s)	436, 445
EaeI	YGGCCR	1 cut(s)	389
EagI	CGGCCG	1 cut(s)	389
EclXI	CGGCCG	1 cut(s)	389
Eco24I	GRGCYC	1 cut(s)	454
Eco47I	GGWCC	3 cut(s)	67, 231, 491
Eco52I	CGGCCG	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	454
FaeI	CATG	2 cut(s)	315, 488
FaiI	YATR	3 cut(s)	104, 313, 486
FaqI	GGGAC	2 cut(s)	80, 504
FatI	CATG	2 cut(s)	311, 484
FauI	CCCGC	1 cut(s)	481
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	454
FspBI	CTAG	3 cut(s)	12, 242, 514
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	4 cut(s)	370, 384, 391, 429
HapII	CCGG	3 cut(s)	388, 432, 494
Hin1II	CATG	2 cut(s)	315, 488
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	28, 149
HpaII	CCGG	3 cut(s)	388, 432, 494
HphI	GGTGA	2 cut(s)	131, 166
Hpy166II	GTNNAC	2 cut(s)	55, 231
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	2 cut(s)	55, 231
Hpy99I	CGWCG	5 cut(s)	202, 239, 329, 336, 459
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	3 cut(s)	71, 235, 329
HpyCH4V	TGCA	1 cut(s)	417
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 414, 465, 494
HpyF3I	CTNAG	2 cut(s)	205, 378
Hsp92II	CATG	2 cut(s)	315, 488
Kzo9I	GATC	2 cut(s)	436, 445
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	4 cut(s)	314, 401, 445, 507
MaeI	CTAG	3 cut(s)	12, 242, 514
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	2 cut(s)	438, 447
MboI	GATC	2 cut(s)	436, 445
MboII	GAAGA	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	2 cut(s)	187, 474
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	7 cut(s)	79, 91, 115, 118, 123, 308, 353
MseI	TTAA	1 cut(s)	345
MspCI	CTTAAG	1 cut(s)	344
MspI	CCGG	3 cut(s)	388, 432, 494
MspR9I	CCNGG	2 cut(s)	432, 433
MvnI	CGCG	2 cut(s)	255, 441
MwoI	GCNNNNNNNGC	4 cut(s)	98, 414, 465, 494
NciI	CCSGG	2 cut(s)	432, 433
NdeII	GATC	2 cut(s)	436, 445
NlaIII	CATG	2 cut(s)	315, 488
NlaIV	GGNNCC	4 cut(s)	68, 291, 430, 492
NmuCI	GTSAC	1 cut(s)	314
NruI	TCGCGA	1 cut(s)	441
NspI	RCATGY	2 cut(s)	315, 488
NspV	TTCGAA	1 cut(s)	185
PciI	ACATGT	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PscI	ACATGT	1 cut(s)	311
PshAI	GACNNNNGTC	1 cut(s)	330
PspN4I	GGNNCC	4 cut(s)	68, 291, 430, 492
PspPI	GGNCC	5 cut(s)	67, 231, 382, 428, 491
RruI	TCGCGA	1 cut(s)	441
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	436, 445
Sau96I	GGNCC	5 cut(s)	67, 231, 382, 428, 491
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	432, 433
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	5 cut(s)	25, 79, 90, 223, 414
SfcI	CTRYAG	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	185
SinI	GGWCC	3 cut(s)	67, 231, 491
SmaI	CCCGGG	1 cut(s)	433
SmlI	CTYRAG	2 cut(s)	344, 364
SmoI	CTYRAG	2 cut(s)	344, 364
SpeI	ACTAGT	2 cut(s)	11, 241
Sse9I	AATT	2 cut(s)	187, 474
SsiI	CCGC	3 cut(s)	255, 466, 488
SspMI	CTAG	3 cut(s)	12, 242, 514
StyD4I	CCNGG	2 cut(s)	430, 431
TaaI	ACNGT	3 cut(s)	71, 235, 329
TaqI	TCGA	2 cut(s)	185, 282
TasI	AATT	2 cut(s)	187, 474
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	314
TspMI	CCCGGG	1 cut(s)	431
Vha464I	CTTAAG	1 cut(s)	344
VpaK11BI	GGWCC	3 cut(s)	67, 231, 491
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	2 cut(s)	315, 488
XmaI	CCCGGG	1 cut(s)	431
XspI	CTAG	3 cut(s)	12, 242, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.