Rroxscaffold_1G00034370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019081
Physical Location & Seq
Reverse (-)
49894954 .. 49904646
9693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00034370.1

Sequence Viewer

Length: 357 bp
ATGAACTTGGTTAGTACTGGCATGCTGAGAAAAGGAACATCTGTGTGTTTGCCATCGCCAATAGTCAATTGGGCTAGGCTCAGGGCATGGTGGATAGTAATGACCAGCAATAAGATGTCCCTTTGCACAGTCCAAGCCTATAAGGTGGTCAGGTTTCAGCCCAAGTCCTTCGATAGCAACTCAAACAAGAGAAATCGTGGAGGCTCAAGGCCACATTTTAAGGGCCACCGGCCGGAAGGACAGCCACGGCAAGGTTTGCACCACCAAAGGCCTCGGGGATCGCAATATCGGGCTCGTCGCCCACACCGCCATTCAATTCTACGACATGCGGGACCGGCTTGGATACGACCAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.63

Weight (kDa)

12.0

Isoelectric Point (pI)

60.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019081)

Species Orthologous Gene IDs
rosa_laevigata RLG00000028398
rosa_multiflora Rmu_sc0001144.1_g000022
rosa_roxburghii Rroxscaffold_1G00034370 Rroxscaffold_4G00303700 Rroxscaffold_6G00397550 Rroxscaffold_7G00190850
rosa_rugosa Rorug02G0028200
rosa_samantha Rh1AG233800 Rh1CG218400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 307, 329
AclWI GGATC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 230
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 232, 251
AgsI TTSAA 1 cut(s) 315
AlwI GGATC 1 cut(s) 286
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 4 cut(s) 209, 223, 230, 269
AspS9I GGNCC 2 cut(s) 223, 332
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 295
BccI CCATC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 263
BciVI GTATCC 1 cut(s) 336
BfaI CTAG 2 cut(s) 75, 355
BfuI GTATCC 1 cut(s) 336
BmcAI AGTACT 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 223, 332
BmiI GGNNCC 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 245, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 251
Bse118I RCCGGY 2 cut(s) 228, 334
Bse1I ACTGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 245, 272
BseLI CCNNNNNNNGG 2 cut(s) 232, 251
BseMII CTCAG 2 cut(s) 17, 94
BseNI ACTGG 1 cut(s) 22
BseX3I CGGCCG 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 233
BshFI GGCC 4 cut(s) 211, 225, 232, 271
BsiEI CGRYCG 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 3 cut(s) 229, 233, 335
BslFI GGGAC 2 cut(s) 103, 345
BslI CCNNNNNNNGG 2 cut(s) 232, 251
BsmFI GGGAC 2 cut(s) 103, 345
BsnI GGCC 4 cut(s) 211, 225, 232, 271
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 1 cut(s) 278
BspACI CCGC 2 cut(s) 307, 329
BspANI GGCC 4 cut(s) 211, 225, 232, 271
BspCNI CTCAG 2 cut(s) 18, 93
BspLI GGNNCC 1 cut(s) 333
BspPI GGATC 1 cut(s) 286
BsrFI RCCGGY 2 cut(s) 228, 334
BsrI ACTGG 1 cut(s) 22
BssAI RCCGGY 2 cut(s) 228, 334
BssECI CCNNGG 2 cut(s) 245, 272
BssMI GATC 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 130
BstAPI GCANNNNNTGC 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 26, 80
BstDSI CCRYGG 1 cut(s) 245
BstKTI GATC 1 cut(s) 281
BstMBI GATC 1 cut(s) 278
BstMCI CGRYCG 1 cut(s) 233
BstMWI GCNNNNNNNGC 3 cut(s) 256, 306, 335
BstNSI RCATGY 2 cut(s) 25, 329
BstZI CGGCCG 1 cut(s) 230
BsuI GTATCC 1 cut(s) 336
BsuRI GGCC 4 cut(s) 211, 225, 232, 271
BtgI CCRYGG 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 23
Cfr10I RCCGGY 2 cut(s) 228, 334
Cfr13I GGNCC 2 cut(s) 223, 332
Csp6I GTAC 1 cut(s) 15
CviAII CATG 3 cut(s) 22, 87, 326
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 2 cut(s) 26, 80
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 230
EagI CGGCCG 1 cut(s) 230
EclXI CGGCCG 1 cut(s) 230
Eco147I AGGCCT 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 332
Eco52I CGGCCG 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 295
FaeI CATG 3 cut(s) 25, 90, 329
FaiI YATR 4 cut(s) 23, 88, 141, 327
FaqI GGGAC 2 cut(s) 103, 345
FatI CATG 3 cut(s) 21, 86, 325
FauI CCCGC 1 cut(s) 322
FriOI GRGCYC 1 cut(s) 295
FspBI CTAG 2 cut(s) 75, 355
HaeIII GGCC 4 cut(s) 211, 225, 232, 271
HapII CCGG 3 cut(s) 229, 233, 335
Hin1II CATG 3 cut(s) 25, 90, 329
HpaII CCGG 3 cut(s) 229, 233, 335
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 2 cut(s) 178, 230
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 126, 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 306, 335
HpyF3I CTNAG 2 cut(s) 26, 80
Hsp92II CATG 3 cut(s) 25, 90, 329
Kzo9I GATC 1 cut(s) 278
LpnPI CCDG 7 cut(s) 3, 67, 118, 136, 242, 246, 348
MaeI CTAG 2 cut(s) 75, 355
MalI GATC 1 cut(s) 280
MboI GATC 1 cut(s) 278
MfeI CAATTG 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 2 cut(s) 67, 315
MnlI CCTC 2 cut(s) 194, 282
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 43
MspI CCGG 3 cut(s) 229, 233, 335
MunI CAATTG 1 cut(s) 67
MwoI GCNNNNNNNGC 3 cut(s) 256, 306, 335
NdeII GATC 1 cut(s) 278
NlaIII CATG 3 cut(s) 25, 90, 329
NlaIV GGNNCC 1 cut(s) 333
NspI RCATGY 2 cut(s) 25, 329
PaeI GCATGC 1 cut(s) 25
PceI AGGCCT 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 2 cut(s) 223, 332
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 43
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 1 cut(s) 278
Sau96I GGNCC 2 cut(s) 223, 332
ScaI AGTACT 1 cut(s) 16
SduI GDGCHC 1 cut(s) 295
SetI ASST 3 cut(s) 147, 155, 256
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
SphI GCATGC 1 cut(s) 25
Sse9I AATT 2 cut(s) 67, 315
SseBI AGGCCT 1 cut(s) 271
SsiI CCGC 2 cut(s) 307, 329
SspMI CTAG 2 cut(s) 75, 355
StuI AGGCCT 1 cut(s) 271
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 171
TasI AATT 2 cut(s) 67, 315
TatI WGTACW 1 cut(s) 14
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 332
XceI RCATGY 2 cut(s) 25, 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 66
XspI CTAG 2 cut(s) 75, 355
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.