Rroxscaffold_6G00397550
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019081
Physical Location & Seq
Forward (+)
19233034 .. 19235024
1991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397550.1

Sequence Viewer

Length: 525 bp
ATGCTGGTCGAGGTGTGGCATTTTGCTACAGCAGCAACACCAATTTGCTTGCTTTCATTTGAGCTGGGTAGTATCATGGACATTGAATCCATCAGCAAATCTGTTGCATTGTCGTACTGTTGCAATGTACGACAAGAAAAATTTAAATTAGCATGGAAGCGCAAAAACAGAGCTCAACCCACCATCGAATATGCGAGAAAGAAAAATGGGGGAGAGCCACAACAACCTCCACCACCGCGCAATGACGTCGTCCTCCGCCGCTTCTTGATTCGGTTTAGGTATAAGGACCGCTTCTTCCTCCACCGCCGGCGAAATCGTGGAGGCTCGAGGCCACATTCTAAGGGCTACGGCCGGAAGGACCGCCACGGCAAGGTCTACACCGCCAAAGGCCCCGGGGACCACCAAGTCGGCTCGCCGCCCACATCGCCATTCAATTCTATGACGCGCAAGACCGGGTCGAATACGACCTGCCCAAGCAAGGTCGTCAATTGGGTCATCAAGAAAGCCAAGGCCGCAATCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

174

Amino Acids

19.86

Weight (kDa)

10.58

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019081)

Species Orthologous Gene IDs
rosa_laevigata RLG00000028398
rosa_multiflora Rmu_sc0001144.1_g000022
rosa_roxburghii Rroxscaffold_1G00034370 Rroxscaffold_4G00303700 Rroxscaffold_6G00397550 Rroxscaffold_7G00190850
rosa_rugosa Rorug02G0028200
rosa_samantha Rh1AG233800 Rh1CG218400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
AatII GACGTC 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 476
AccI GTMKAC 1 cut(s) 375
AccII CGCG 2 cut(s) 238, 445
AciI CCGC 9 cut(s) 236, 256, 259, 289, 304, 361, 381, 416, 513
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 2 cut(s) 116, 129
AfiI CCNNNNNNNGG 2 cut(s) 370, 478
AgsI TTSAA 2 cut(s) 86, 433
AluBI AGCT 2 cut(s) 64, 173
AluI AGCT 2 cut(s) 64, 173
Alw21I GWGCWC 1 cut(s) 175
Ama87I CYCGRG 2 cut(s) 325, 392
AoxI GGCC 4 cut(s) 329, 349, 388, 510
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 140
AspLEI GCGC 3 cut(s) 162, 240, 447
AspS9I GGNCC 4 cut(s) 286, 358, 389, 397
AsuC2I CCSGG 3 cut(s) 393, 394, 454
AvaI CYCGRG 2 cut(s) 325, 392
AvaII GGWCC 3 cut(s) 286, 358, 397
BanII GRGCYC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 44
BccI CCATC 2 cut(s) 98, 191
BceAI ACGGC 2 cut(s) 364, 382
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BcnI CCSGG 3 cut(s) 393, 394, 454
BfaI CTAG 1 cut(s) 523
BfmI CTRYAG 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 476
BisI GCNGC 4 cut(s) 33, 259, 416, 513
BlsI GCNGC 4 cut(s) 34, 260, 417, 514
Bme1390I CCNGG 3 cut(s) 393, 394, 454
Bme18I GGWCC 3 cut(s) 286, 358, 397
BmeT110I CYCGRG 2 cut(s) 325, 392
BmgT120I GGNCC 4 cut(s) 286, 358, 389, 397
BmiI GGNNCC 2 cut(s) 391, 398
BmrFI CCNGG 3 cut(s) 393, 394, 454
BpuMI CCSGG 3 cut(s) 393, 394, 454
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 5 cut(s) 364, 391, 392, 393, 507
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 478
Bse118I RCCGGY 1 cut(s) 306
Bse3DI GCAATG 2 cut(s) 130, 247
BseDI CCNNGG 5 cut(s) 364, 391, 392, 393, 507
BseLI CCNNNNNNNGG 2 cut(s) 370, 478
BseMI GCAATG 2 cut(s) 130, 247
BseX3I CGGCCG 1 cut(s) 349
BseXI GCAGC 1 cut(s) 44
BseYI CCCAGC 1 cut(s) 64
Bsh1236I CGCG 2 cut(s) 238, 445
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 4 cut(s) 331, 351, 390, 512
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 175
BsiHKCI CYCGRG 2 cut(s) 325, 392
BsiSI CCGG 4 cut(s) 307, 352, 393, 453
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 370, 478
BsmFI GGGAC 1 cut(s) 410
BsnI GGCC 4 cut(s) 331, 351, 390, 512
BsoBI CYCGRG 2 cut(s) 325, 392
Bsp1286I GDGCHC 1 cut(s) 175
BspACI CCGC 9 cut(s) 236, 256, 259, 289, 304, 361, 381, 416, 513
BspANI GGCC 4 cut(s) 331, 351, 390, 512
BspFNI CGCG 2 cut(s) 238, 445
BspLI GGNNCC 2 cut(s) 391, 398
BspMI ACCTGC 1 cut(s) 476
BsrDI GCAATG 2 cut(s) 130, 247
BsrFI RCCGGY 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 5 cut(s) 364, 391, 392, 393, 507
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 507
Bst4CI ACNGT 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 3 cut(s) 50, 308, 413
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 1 cut(s) 364
BstFNI CGCG 2 cut(s) 238, 445
BstHHI GCGC 3 cut(s) 162, 240, 447
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 3 cut(s) 32, 424, 512
BstSCI CCNGG 3 cut(s) 391, 392, 452
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 2 cut(s) 238, 445
BstV1I GCAGC 1 cut(s) 44
BstZI CGGCCG 1 cut(s) 349
BsuRI GGCC 4 cut(s) 331, 351, 390, 512
BtgI CCRYGG 1 cut(s) 364
BtgZI GCGATG 1 cut(s) 408
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 3 cut(s) 50, 308, 413
CfoI GCGC 3 cut(s) 162, 240, 447
Cfr10I RCCGGY 1 cut(s) 306
Cfr13I GGNCC 4 cut(s) 286, 358, 389, 397
Cfr9I CCCGGG 1 cut(s) 392
CseI GACGC 1 cut(s) 451
Csp6I GTAC 2 cut(s) 115, 128
CviAII CATG 2 cut(s) 76, 153
CviQI GTAC 2 cut(s) 115, 128
DdeI CTNAG 1 cut(s) 339
DraI TTTAAA 1 cut(s) 145
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
EaeI YGGCCR 1 cut(s) 349
EagI CGGCCG 1 cut(s) 349
EciI GGCGGA 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 173
EclXI CGGCCG 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 507
Eco24I GRGCYC 1 cut(s) 175
Eco47I GGWCC 3 cut(s) 286, 358, 397
Eco52I CGGCCG 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 173
Eco88I CYCGRG 2 cut(s) 325, 392
EcoICRI GAGCTC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 2 cut(s) 79, 156
FaiI YATR 5 cut(s) 77, 154, 192, 282, 440
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 1 cut(s) 410
FatI CATG 2 cut(s) 75, 152
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 4 cut(s) 33, 259, 416, 513
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 4 cut(s) 33, 259, 416, 513
FspBI CTAG 1 cut(s) 523
GlaI GCGC 3 cut(s) 161, 239, 446
GluI GCNGC 4 cut(s) 33, 259, 416, 513
GsaI CCCAGC 1 cut(s) 68
HaeIII GGCC 4 cut(s) 331, 351, 390, 512
HapII CCGG 4 cut(s) 307, 352, 393, 453
HgaI GACGC 1 cut(s) 451
HhaI GCGC 3 cut(s) 162, 240, 447
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 2 cut(s) 79, 156
Hin6I GCGC 3 cut(s) 160, 238, 445
HinP1I GCGC 3 cut(s) 160, 238, 445
HinfI GANTC 2 cut(s) 86, 268
HpaII CCGG 4 cut(s) 307, 352, 393, 453
Hpy166II GTNNAC 1 cut(s) 376
Hpy188III TCNNGA 2 cut(s) 265, 499
Hpy8I GTNNAC 1 cut(s) 376
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 107, 123
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 424, 512
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 2 cut(s) 79, 156
HspAI GCGC 3 cut(s) 160, 238, 445
KroI GCCGGC 1 cut(s) 306
KroNI GCCGGC 1 cut(s) 308
LpnPI CCDG 6 cut(s) 50, 320, 365, 406, 466, 481
Lsp1109I GCAGC 1 cut(s) 44
MaeI CTAG 1 cut(s) 523
MaeII ACGT 1 cut(s) 246
MboII GAAGA 1 cut(s) 286
MfeI CAATTG 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 5 cut(s) 42, 140, 146, 433, 487
MnlI CCTC 6 cut(s) 4, 237, 263, 308, 314, 321
MreI CGCCGGCG 1 cut(s) 306
MroNI GCCGGC 1 cut(s) 306
MseI TTAA 1 cut(s) 144
MspI CCGG 4 cut(s) 307, 352, 393, 453
MspR9I CCNGG 3 cut(s) 393, 394, 454
MunI CAATTG 1 cut(s) 487
MvnI CGCG 2 cut(s) 238, 445
MwoI GCNNNNNNNGC 3 cut(s) 32, 424, 512
NaeI GCCGGC 1 cut(s) 308
NciI CCSGG 3 cut(s) 393, 394, 454
NgoMIV GCCGGC 1 cut(s) 306
NlaIII CATG 2 cut(s) 79, 156
NlaIV GGNNCC 2 cut(s) 391, 398
PaeR7I CTCGAG 1 cut(s) 325
PdiI GCCGGC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 86, 268
PflFI GACNNNGTC 2 cut(s) 248, 454
PkrI GCNGC 4 cut(s) 34, 260, 417, 514
Psp124BI GAGCTC 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 391, 398
PspPI GGNCC 4 cut(s) 286, 358, 389, 397
PspXI VCTCGAGB 1 cut(s) 325
PsyI GACNNNGTC 2 cut(s) 248, 454
RsaI GTAC 2 cut(s) 116, 129
RsaNI GTAC 2 cut(s) 115, 128
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 4 cut(s) 33, 259, 416, 513
Sau96I GGNCC 4 cut(s) 286, 358, 389, 397
ScrFI CCNGG 3 cut(s) 393, 394, 454
SduI GDGCHC 1 cut(s) 175
SetI ASST 9 cut(s) 15, 66, 175, 229, 249, 281, 375, 470, 483
SfcI CTRYAG 1 cut(s) 27
Sfr274I CTCGAG 1 cut(s) 325
SgrAI CRCCGGYG 1 cut(s) 306
SinI GGWCC 3 cut(s) 286, 358, 397
SlaI CTCGAG 1 cut(s) 325
SmaI CCCGGG 1 cut(s) 394
SmiI ATTTAAAT 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 5 cut(s) 42, 140, 146, 433, 487
SsiI CCGC 9 cut(s) 236, 256, 259, 289, 304, 361, 381, 416, 513
SspMI CTAG 1 cut(s) 523
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 3 cut(s) 391, 392, 452
StyI CCWWGG 1 cut(s) 507
SwaI ATTTAAAT 1 cut(s) 145
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 1 cut(s) 249
TaqI TCGA 5 cut(s) 9, 186, 326, 458, 519
TasI AATT 5 cut(s) 42, 140, 146, 433, 487
TauI GCSGC 3 cut(s) 261, 418, 515
TfiI GAWTC 2 cut(s) 86, 268
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 45
TspMI CCCGGG 1 cut(s) 392
Tth111I GACNNNGTC 2 cut(s) 248, 454
VpaK11BI GGWCC 3 cut(s) 286, 358, 397
XapI RAATTY 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 325
XmaI CCCGGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 375
XspI CTAG 1 cut(s) 523
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.