Rroxscaffold_7G00190850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0019081
Physical Location & Seq
Reverse (-)
31258419 .. 31258898
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190850.1

Sequence Viewer

Length: 480 bp
ATGTGCGGGAAGAAAAATGGGGGAGAGCCACAACAACCTCCACCACCGTGCAATGACGTCGTCCTCTGCTACTTCTCGATTGGGTTTGGGTATAAGGACTGCTTCTTCCTCCACCGCCAGCGAAATCATGGAGGCTCAAGGCCACATTCTAAGGGCCACCGCCGGAAGGACCGCCACGGCAAGGTCTACACCGCCAAAGGCCCCGGGGACCACCACGTCCGGACGTCGGCTCGCCGCCCACACCGCCATTTAATTCTACTATGCACAAGACCGGCTCGAATACGACCGGCCCGGCAAGGTCGTCGATTGGGTCATCAAGAAAGCCAATACCGCAATCGACGAGCTGCCGCCGTGGAACCCGAACTCAATTTACGTTCGGACAACATCTTCTTCGACGGTGTCGATATTTGCCGCCCGAGGACACGCAGAACGCGAGCCTCCATTTCTCGATTGTGGAGGCTCCGAGTTCTTTATCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.58

Weight (kDa)

11.45

Isoelectric Point (pI)

62.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019081)

Species Orthologous Gene IDs
rosa_laevigata RLG00000028398
rosa_multiflora Rmu_sc0001144.1_g000022
rosa_roxburghii Rroxscaffold_1G00034370 Rroxscaffold_4G00303700 Rroxscaffold_6G00397550 Rroxscaffold_7G00190850
rosa_rugosa Rorug02G0028200
rosa_samantha Rh1AG233800 Rh1CG218400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AatII GACGTC 2 cut(s) 60, 227
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 433
AccIII TCCGGA 1 cut(s) 219
AcyI GRCGYC 2 cut(s) 57, 224
AfiI CCNNNNNNNGG 3 cut(s) 166, 181, 226
AjiI CACGTC 1 cut(s) 217
AleI CACNNNNGTG 1 cut(s) 46
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
Ama87I CYCGRG 2 cut(s) 203, 415
Aor13HI TCCGGA 1 cut(s) 219
AoxI GGCC 4 cut(s) 140, 154, 199, 288
ApeKI GCWGC 1 cut(s) 344
AspS9I GGNCC 5 cut(s) 154, 169, 200, 208, 289
AsuC2I CCSGG 3 cut(s) 204, 205, 292
AvaI CYCGRG 2 cut(s) 203, 415
AvaII GGWCC 2 cut(s) 169, 208
BbvI GCAGC 1 cut(s) 331
BceAI ACGGC 2 cut(s) 193, 335
BcgI CGANNNNNNTGC 4 cut(s) 40, 74, 284, 318
BcnI CCSGG 3 cut(s) 204, 205, 292
BisI GCNGC 4 cut(s) 235, 345, 348, 412
BlsI GCNGC 4 cut(s) 236, 346, 349, 413
Bme1390I CCNGG 3 cut(s) 204, 205, 292
Bme18I GGWCC 2 cut(s) 169, 208
BmeT110I CYCGRG 2 cut(s) 203, 415
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 5 cut(s) 154, 169, 200, 208, 289
BmiI GGNNCC 4 cut(s) 202, 209, 357, 461
BmrFI CCNGG 3 cut(s) 204, 205, 292
BpuEI CTTGAG 1 cut(s) 121
BpuMI CCSGG 3 cut(s) 204, 205, 292
BsaHI GRCGYC 2 cut(s) 57, 224
BsaJI CCNNGG 6 cut(s) 175, 202, 203, 204, 351, 416
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 181, 226
Bse118I RCCGGY 2 cut(s) 271, 286
Bse3DI GCAATG 1 cut(s) 58
BseAI TCCGGA 1 cut(s) 219
BseDI CCNNGG 6 cut(s) 175, 202, 203, 204, 351, 416
BseLI CCNNNNNNNGG 3 cut(s) 166, 181, 226
BseMI GCAATG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 433
Bsh1285I CGRYCG 1 cut(s) 287
BshFI GGCC 4 cut(s) 142, 156, 201, 290
BsiEI CGRYCG 1 cut(s) 287
BsiHKCI CYCGRG 2 cut(s) 203, 415
BsiSI CCGG 6 cut(s) 163, 204, 220, 272, 287, 292
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 166, 181, 226
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 4 cut(s) 142, 156, 201, 290
BsoBI CYCGRG 2 cut(s) 203, 415
Bsp13I TCCGGA 1 cut(s) 219
BspANI GGCC 4 cut(s) 142, 156, 201, 290
BspEI TCCGGA 1 cut(s) 219
BspFNI CGCG 1 cut(s) 433
BspLI GGNNCC 4 cut(s) 202, 209, 357, 461
BsrDI GCAATG 1 cut(s) 58
BsrFI RCCGGY 2 cut(s) 271, 286
BssAI RCCGGY 2 cut(s) 271, 286
BssECI CCNNGG 6 cut(s) 175, 202, 203, 204, 351, 416
BssNI GRCGYC 2 cut(s) 57, 224
Bst4CI ACNGT 2 cut(s) 48, 398
BstACI GRCGYC 2 cut(s) 57, 224
BstC8I GCNNGC 3 cut(s) 119, 232, 435
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 2 cut(s) 175, 351
BstFNI CGCG 1 cut(s) 433
BstMCI CGRYCG 1 cut(s) 287
BstMWI GCNNNNNNNGC 2 cut(s) 243, 330
BstSCI CCNGG 3 cut(s) 202, 203, 290
BstUI CGCG 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 331
BsuRI GGCC 4 cut(s) 142, 156, 201, 290
BtgI CCRYGG 2 cut(s) 175, 351
BtrI CACGTC 1 cut(s) 217
Cac8I GCNNGC 3 cut(s) 119, 232, 435
Cfr10I RCCGGY 2 cut(s) 271, 286
Cfr13I GGNCC 5 cut(s) 154, 169, 200, 208, 289
Cfr9I CCCGGG 1 cut(s) 203
CviAII CATG 1 cut(s) 128
DdeI CTNAG 1 cut(s) 150
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
Eco47I GGWCC 2 cut(s) 169, 208
Eco88I CYCGRG 2 cut(s) 203, 415
EcoO109I RGGNCCY 1 cut(s) 200
FaeI CATG 1 cut(s) 131
FaiI YATR 3 cut(s) 93, 129, 262
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FaqI GGGAC 1 cut(s) 221
FatI CATG 1 cut(s) 127
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 4 cut(s) 235, 345, 348, 412
Fsp4HI GCNGC 4 cut(s) 235, 345, 348, 412
GluI GCNGC 4 cut(s) 235, 345, 348, 412
HaeIII GGCC 4 cut(s) 142, 156, 201, 290
HapII CCGG 6 cut(s) 163, 204, 220, 272, 287, 292
Hin1I GRCGYC 2 cut(s) 57, 224
Hin1II CATG 1 cut(s) 131
HpaII CCGG 6 cut(s) 163, 204, 220, 272, 287, 292
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 379, 464
Hpy188III TCNNGA 4 cut(s) 76, 220, 317, 447
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 5 cut(s) 62, 229, 306, 342, 398
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 48, 398
HpyCH4IV ACGT 4 cut(s) 57, 216, 224, 373
HpyCH4V TGCA 2 cut(s) 51, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 330
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 4 cut(s) 57, 216, 224, 373
Hsp92I GRCGYC 2 cut(s) 57, 224
Hsp92II CATG 1 cut(s) 131
Kpn2I TCCGGA 1 cut(s) 219
LmnI GCTCC 1 cut(s) 465
LpnPI CCDG 7 cut(s) 131, 176, 217, 233, 285, 300, 305
Lsp1109I GCAGC 1 cut(s) 331
MaeII ACGT 4 cut(s) 57, 216, 224, 373
MboII GAAGA 4 cut(s) 22, 97, 379, 382
MluCI AATT 2 cut(s) 252, 367
MnlI CCTC 7 cut(s) 48, 74, 119, 125, 411, 448, 450
MroI TCCGGA 1 cut(s) 219
MseI TTAA 1 cut(s) 251
MslI CAYNNNNRTG 1 cut(s) 46
MspI CCGG 6 cut(s) 163, 204, 220, 272, 287, 292
MspR9I CCNGG 3 cut(s) 204, 205, 292
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 2 cut(s) 243, 330
NciI CCSGG 3 cut(s) 204, 205, 292
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 4 cut(s) 202, 209, 357, 461
OliI CACNNNNGTG 1 cut(s) 46
PcsI WCGNNNNNNNCGW 2 cut(s) 399, 430
PflFI GACNNNGTC 2 cut(s) 59, 398
PkrI GCNGC 4 cut(s) 236, 346, 349, 413
PspN4I GGNNCC 4 cut(s) 202, 209, 357, 461
PspPI GGNCC 5 cut(s) 154, 169, 200, 208, 289
PsrI GAACNNNNNNTAC 2 cut(s) 354, 386
PsyI GACNNNGTC 2 cut(s) 59, 398
RseI CAYNNNNRTG 1 cut(s) 46
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 4 cut(s) 235, 345, 348, 412
Sau96I GGNCC 5 cut(s) 154, 169, 200, 208, 289
ScrFI CCNGG 3 cut(s) 204, 205, 292
SetI ASST 8 cut(s) 40, 60, 186, 219, 227, 301, 346, 376
SinI GGWCC 2 cut(s) 169, 208
SmaI CCCGGG 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 2 cut(s) 252, 367
StyD4I CCNGG 3 cut(s) 202, 203, 290
TaaI ACNGT 2 cut(s) 48, 398
TaiI ACGT 4 cut(s) 60, 219, 227, 376
TaqI TCGA 7 cut(s) 77, 277, 304, 337, 393, 402, 448
TasI AATT 2 cut(s) 252, 367
TauI GCSGC 3 cut(s) 237, 350, 414
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TseI GCWGC 1 cut(s) 344
TspMI CCCGGG 1 cut(s) 203
Tth111I GACNNNGTC 2 cut(s) 59, 398
VpaK11BI GGWCC 2 cut(s) 169, 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XmaI CCCGGG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 186
ZraI GACGTC 2 cut(s) 58, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.