RLG00000029164

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016427
Physical Location & Seq
Reverse (-)
33903705 .. 33918305
14601 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029164

Sequence Viewer

Length: 10872 bp
ATGGCTTCCATGGGGGTTCAACCCTCCTCAACTTCTACTACTCCTCGTCCTCCACCTTTGAACCCTCCAATAAAATACGACGTTTTTCTGAGTTTTAGAGGTGCGGACACCCGCACAAAATTTACAGACCATTTATACAAGGAGTTACATGTTCGGAAAGGCATCCCCACCTTTAGGGATTCTGAAGAGCTCGAGAAGGGAGAAGACATTTCACAACTATTTGAGGCAATTGAAAAATCCAAAATTGCAGTTGTCATTCTTTCAAGTAACTATGCTTCTTCGACATGGTGTTTGAGAGAAGTTGCAAAGATTGTCGAATGCAGAAAGAAGTCTGGACTCATCGCTTTGCCGGTATTCTATGAGATCGAACCATACCAGGTACGATATCAGACGGGAAGTTTCAAGACATACTTTGATAAACATGAGCAGAAATTCAAGGACAGCATAGGGAGGGTCAATATTTGGAGGGAAGCGTTGACTGAAGTAGCTGATCTCTCCGGATGGGATTTAAAAGACAGGTTGGAGACCATTGTTATTGAAGAGATAGTAAAATGTGTCGAGACAAAATGGAAGCTCAAATTTAATCCTGCATTCTCAATTGAGGATTCCAAGGATTTTGTTGGGATGGATCGTGTGAGGAAAATCGAATTGGACTTGGATATAGAGACATTGGATAAAATTGGTGTCATTGGAATTTGCGGGATGCCAGGAGTAGGTAAGACAACTATTGCAGAAGTTGTGTTTCGAAGAAATTGGCACCATTTTGAAGCTAACAGTTTCCTTGCTAATGTTGGAGAGATACGTAAGACGAAAGGATTATTGCATATACAGAAGCAACTTTATCGCGACTTGTTGGATAGCAAAGTTATAACTATGAATGATGTCCCTGGGGAAAGGAGAAAATTGTGTCACAAAAAGGTGCTTATCATTCTTGATGGTGTGACTGAGTTAGAATCTGTTGTTGAGCTAGCAGGAAGAGGTGGTGAAGAATTAATCAATTGGTTTGGTCGAGGCAGTAGAATCATTATAACCACAATAAATGAAAAGTTGTTGAAGGATTATGAGGCAAAAACACACAAGGTTGAGACACTTTCTGAAAATGAGCCTCGTGTGCTCTTCTTCCGGAAAGCCTTCAACAAAGACCATCCTCTGCATGATTGTACTGAGTTGGACTTCAAGTTCAAGCTAGATCATACTATGCGTCAGTATGTTGAGTTGTCTTACAAATTTGTGGATTTAACTGATGGTCTTCCTTTGGCTATTGTAGTTTTGGGAAGCTTGTTATTGAACAGATCTTTGGATGAATGGGAAGCTGAACTTCGCACACTAGAAGCTAATAATGATTCTAATGATGAGAAAACTTTTGGGATTCTTAAGCTATGTATTGATGGATTACGTGATGGAGGAAAGGAAATTTTCTTGGACATTGCATGCTTCTTTAAAGGAGATGACAAAAAACGTGTAGAACGGATATTTGAAAGCTGTGGCCACAATCCAGGCATTGAATTGAATATTCTCGTCGAGAAATCTCTAGTAACAATTGTGGGAGGAAAATTGTGGATGCATGATTTACTACAAAAAGCTGGCCAGAAAATGGTTATTGGGCAATCCAAATTACTAGGGGAGCGCAGCAGATTGTGGGATCGTAAAGAAGCCATTTCTGTACTTAAACATGATAAGGGGACAAGTGCTGTCAGAGGTATTTTCTTAAGCTCACCTCAACAAGACAAAGTGCGATTGAAGGCTGACTCATTTGCAAAAATGGACTTTCTTAGATTGTTGAAAATAAAGAATGTGATATTTTCTGGATGCCATGAATACGATCTTTCAAATGAATTAAGCTTCTTGGAATGGCATGGCTTTCCTTCAACATCTCTGCCTTCTGATTTTGAACCAGAGAATCTTGTTGAACTGCACTTGCCTCGAAGCCAAATAAAGCAAGTATGGGAGGATAATATGACGCCTCCTTTGGAAAAGTTGGTTGTAATGGACCTTAGTGATTGCAAAGAGTTGACCAGTACCCCAAACTTCCAGTCAGTGCCAAATCTTGAGAGCCTAGTTCTCAAAGGTTGTACAAGATTGTCTGAGGTAGACCTACCCAATGGAGATCAGCTCCAAAAGCTCATTTCATTGAATCTGGAAGGTTGCGAGTCTCTTAGTAGTCTTCCCAACGGTATCTGCAGCTTGAGATCTCTCACAACTTTCATTCTTTCGGGATGTTCCAGACTTGCAAATCTTCCGGAGAAGATTGGGGAAAACATGAAACAATTATCCGGACTTGATTTGGAGGGGACAGCTATAAACGAGCTACCAACATCAATTAAGCAGTTGACTGGTCTTATTCGGCTCAATCTAAAAGACTGCAAGAACCTTTTAAGTCTGCCAGCCGTCATTTGTAGTTTGACAAAACTTCAAGTTCTCAACCTATCTGGCTGCTCAAATCTTGCTGAGTTACCAGAAAACTTGGGAAGTTTAGTAGGTTTGAAGGAACTTGATGCAAGCAGAAGTTGTATAAGACAAGTACCTTCCTCCATTCTACTTCTGAAGGACCTTGAAAGTTTATCTTTTTGTGGATGTGGAGGTTTGCAGCCATCAGCATGTCCCATAGGTTTGCAGTTGCCTGCTTCATTCTCGGGATTAGATTCTTTGACAAAATTAGATCTAAGCTATTGCAAACTGTCTGATGGAGCAATCCCTGCTGGTCTTGACTGCTTATCTTCACTTAATCATCTAATTTTAAGTGGGAATAGTTTAGTGAGTGTACCGGAAAGCATCACCAAACTTTCTAAGCTTGAAGTCCTTCTACTGAATGATTGTAGCGAGCTTCGATCATTACCAGATCTTCCATCAAGTATACGACGTGTTTTTGCACGGAATTGTCCTCTGCTTGGAACTTATTCAAATAAATTAACTGTGTGGAGTTCAACTGCTACAGGATTTTGTTTCATAAATTCCCAAAGTAGTGCAGAACGTAAACTTCAGAGGATTCCGATATCAGAACAACATCTTCTGCGGCCTCATTTGCAAAAGTTCTATGAGGATATAATTTATAAAGGTAGTGGTTTTGAATATATTACTCCTCACACTGAAATTCCATCATGGTTCGGTCGCCAGAGTACAGGGTCGTCTATAACACTTCAGCTACCTTTAGATTATTTCGACGGCAAACGTGAGTTGATGGGACTTGCTCTATGTTTTGTTTATGAAGCCCAGGAGCATGAGAATATGGAATCAACAGCTTCTAACATCTCGGCTCAGGAAGTAAAATATAGTTGCAATTACAGTTGTCGTTTGTCCACATATGGAGGTCCTCATGATGACTGTCCCCTCCTCGTGTGTAAACTCATGGATCATGATTATGTTGGATCTTTTCGACATTGGGTCTATATAGCAGGAGGGATGTTTGCAGAAAGGTTAATCAAACGCTCTGTTCGAGCTGAAGTTATAATCAACAGACCAGGGGTGGAAGTGAAAGCCTGTGGGGCAAGTCTAATATACTCTGGAGGTGTGACAGAATTTGTTTGGAATTTGAATCTCCGTGATGAAATTCATGTGAGAAATCTGTCGAGTGGGGATCAAAAGGAAAAATCTGACGATCAGTTTAATAAACAAGAACAAGAAACTATTTGTGATCATCTGCTGGAACTAAAACATGTACCTGTCCAATATCAGGCCCAAATGAATCGCATGATCTCATTGTATGATACTAAACGAAGTAACAAGCGATCCCTTGACCATGATGCCGGATCATCTAGTAGAGCCAGCAGCAGCACTGAAGAACCTCATCAAAGATTAGAAATATCAAAATCCAATGATCAGTCCAACAAACAAGAGCAAGAGACTAATTATGGTTGTGCTACAGACAAAAGATTCTTGATTGAAATTGAACCACACACTTCAAGAGAGAGTTCAACTTCAACCACGATCTTTGATGATCAATTGAGAACAAATGTAGAGTCATTCCTTGAGGAACTATTTGAGCTAGGAGGCAAAGCACGTCGCAAGGATTTAGGTTTCATTTTCCCTCTCAGAGCAATTTTGCCGTGGTTTAATCATCAATGCATTGGGAACGTATTCATTCCAGAAAAAGAAAGAATTGGGAGTTCAGTAAGCCTACCTCTTCCTCTAGAATTGTATAACAATAAGGAATGGGTAGGATTTGCTGTATATGTAGCCTTCACTCTGCCTCCAGGTGTTTCACTTGAAAAATCATGTTGCTTCAAGTCTGTATTGTATACTAGTGATGGTCATTTTTATTGCCTAAAATTATCGGCGGCTTGTGAAGACAATTTTAAGGGAGCACATCGACTCCTTGTCATCCACATTCCAAGAGGGCGTTTTAAAAAACGGTTGAATGAGTGCGTGGGAATTCGTGCTGCTTTTGTCTCCTCAACTCCAAGTGTGGAGGCTGAGATGTGTGGGATCCGTGTAGTATACGAGCAAGATTTGAAAGGGTTAATCCAAACAATTACCCAATGCACCATAAGAAATCCGCCTGCAGTCTACTATGGACTTGCCCATTCATTCGTGCCATATGGAAGAGAGTCTTTCATGTTAGCTATTATGGAGGATAATTTGATTGAAGCAGCTAAATCCAGCAAAAGGAAGCTTTCAACCTTGCAAGAGCCTTTAACAGATTCAAAGTTCCTCAGTGGTCAACAAATTTACTTAGAGATAGAGGCTGGAACTCCATACATGCCACACAAGTTTGAAGATTCCATAGTTGACTGGAAAAAAAACCTTGAGCTTTTGCTTGAATGTTTCTTTACCCTTTCTGATCTATCTATTAGTCTCACTCTTCACAGAAGCACAACCTCTTTCTCAAGGAATTTTGATCCTTGTTCTGGTATTTTTCTTCAAAGAGAAATTCCAGAGTGGTTCACACCACAATATCCCTCCGAGAGTATGGTGTTGGAACTTCCTCGAAATTTGGAAAATGATTTGAATTTCAATGGACTTATTGTATGTGCTGCCTTTTCAGTCCATGCCTCTGAAGCTGACGTCCTCAAATATCTGAAATCAGGACTCCATCCCGAACTTACGTGCCATTTCCAAAATTTGAGTTCTGAATCTTCTGATCAATCTTATGGTCTTACAGCTCCCATGATTGATACCAGTCCCGAGAACAAATTCATGTGGTTATATCGCAGAGGATTCATTTGGCAGGAATACCTACCCCGTGACTTATTTAAGGATCTGCTGCATAAAGATACTTCAGTCAAGGTTTCATTTAGGAGTGATTCTTCCCAAGTCTTGGAGGTACAGAAATGTAGCTTCCGCATCTTATACAAGCAAGATGTGGAAAAATTCAAGCAAATGTTAATAGAGTGCTTTACCTCCTTCTTTGACAATTACGACACCATTCGAGCATATTTAGTACAGGATTCTGGAGATTACAGCCACTTAAATCATCATGCAGTTACACCTTTTTGTCTGGGTGAAACTAGTGGAAAAGCCAATGATCAGCTGGAACTAGGACATGTACCTGTCCAATATCAGCCTCAAATGGACCGCATGATCTCTTTGTATGATACTAAAGGAAGTAACATGCAATCCCTTGACCATGATGCAGGATCATCTAGTAGAACTGGCAGCAGTACTGAAGAACCTCTTCAAATATTAGAAAGACCAGAATCCAATGATCGGTCCGATGAACAAGTGCACGAAACTAATTCTGATCTTACACATGTAGCAGAATGTGGTTATGCTCCAGACACTAGATTCTTGATTGAAATTGAACAACACACTTCAAGAGATAATTCAAGTTCAACCAAGATTGTTGGTGATCGATTGAGAACAAATGTAGAGTCATTCCTTGAAGAACTATTTGAGCTGGGAGGCAAAGCACGTCGCTATGATTTAGGTTTCATTTTCTCTCTTCGAGCAATTTTACCGTGGTTTAAACATCAAGGCATTGGGGACATGATAGGTGTACCTCTTCCCCTAGAATTGTATAACAACAAGGAATGCATAGGATTTGCTCTATATGTGATCTTCACACTGCCCCCAGGTGCTTGGCTTAAAGAAGGTTCTTGTTTTAAAATTGAGTTTACTGAAGAGCCAAGGTATTGCCTAAACTTAGCGTCCGCTGGTGAAGACAATTTCAGGGGTTCACATCGACTCCTGGTTATTCACATACCACAAAGACATTTTGGAGAACAGTTGAACCAGTGCAGTACCATTCGTGCTTCTTTTGAATCCCATATGCCAGGTGTGGAGGTTGAGATGTGTGGCATGCGTGTAGTATACCAGGAAGATTTGAAAGGGTTAATCCAAACAATTACCAACTGCACAATATGCAGTCCCCCTGCTTACTATGGACTTGCCCAACCATTTGTGCCGGGAAGGTGGTCTTATGTGTTCACACACATGAGGAATAGTTTGGTTGAAGCAGCTAAATCCAGCAAGAGGAAGCTTTCAACCTTGCAAGAGCCTTTAACAGATTTAAAATCCATCCAAGGAATTCAGTTACTGATACTTGCTGCAACTCCATTTACTTCACTCAAGAAAACAGAAACAGTAATCAAGTGGAAAAGAAACCTTAAGCTTTTGCTTCAACGTTTCTTAACCCTTTCTGGTCTATCAATAAGTCTCATTCTTAGAGGAGGCAGAATTTCTTTCTCAGAGGATCATAATCTTCATAGTGGTATTTTCTTTCAAAAGGAAATTCCAGACTGGTTTACACCACATCACTCTGCCAGTATGGTGCCCGAACTTCCTCCAGATTTGGAAAATGATATGAATTTGATGGGTTTTGTTGTATGTGCCGCCTTTTCAGTCCACGCCTCTAAAGCTGATGTCCTCAAATATCTGGATTCAGGACACCATCCCGAACTTATGTGCCATTTCCAATCAAGTTCTGACCATTCTGGTGTAGTAGTTCGTAACATGGTTGGCATCAGTCCGAACAACAAATTCATGTGGTTTTATCGTAGAGGATTCATTTGGCTGCATTACGTGCCCCGTCACAATGCTGAGCATCTCTTCAATAAACTATCTGAACTAGAGGTTTCATTTGACAGTGATTCTTCCCAAGTATTGGTGGTACAGAAATGTAGCTTCCGTTTCTTATACAAGCAAGATGTAGAAGGATTTAAGCAAACAATAATAGAGTGCTTTACCTCCTTCTTTGACAACGAGGATATCATTAAGCCATATATAGAAGAAGAGGACTCTGGACATAATAAGTGGCCAAATCATGGAGATGAGATGGGACCATCTAGTACAACTGGTGGCAACATTGTCATTGAGCAAACTCACAATGAGAGATTAGATGTACCCATAACTGATGGGAAAGGAAAAGACCCTTCTGATGTCTCCTCAGTTGAAGCAGATGAGAGAGATTATTATGGAACTACACCTGTTTGTCAGGGTGAAACTAGTGGACAAGCCAGTCATCAACTGGAACTAGTTACACATGTAGTAGAAGAAGAACATGGTTCTAGTACTTCTCCTACGGAGCCAATCCCATTCTTATCTGAAATTGAACCTTCCGCCTCAACAGGTTCAAGTTCAACCAAATTTGAAGGTGATCAGTTCAGAACTAGTGGAAAATGCAGTGATCAGCTGGAACTAGTTACACATGTAGTAGAAGAAGAACACGGTTCTAGTTGTCCTCCGGAGCTAATCCCATTCTTATTTGAAATTGAACCTTCCGCCTCAACAGATTCAAGTTCAACCAAATTTGAAGGTGATCAGTTCAGAACAAATGTGGAGGCTTTGCTCACAGTAATGTTTCGACATAAGATAGGATATGACTTTGAACATGGTTTTATTTTATCTCCGAGAGTTGGAGCAATTTTGCCATGGTTTAATCACCAAACCATTGGGAGCGGAGCACTAGTACTTCATCTTCCTCCGGATTTGTACAAGGATAAGAAATGGGCAGGGTTAGCTCTATATGTTGCCTTCACTGTGCCCCCAGGTTATACGGAAAACATTCTATGTCGCTGTTCTTTGTCTACCTCTGCAGGACATGCAGAAGCGATCACAATAGCATGCTCCCAAGGCATTTTTTCCGGATCACGACGACTCTGTTTCATTCATAAACCGCGTGCACGTTTTCCAGAACAGTGGAATGCGTGTAGCTACATTTCTGCCTTCTTTGAAGTCCTTACTCCAGTTGTGGATGTTGAGATGTGTGGGGTCCATCTAGTATACGAGCAAGATCTGATAGGGATAATCCAAACAATTACCCACTGCACTATTAGGAGTCCGCCTGTTTACTATGGAATTGGACGTGCTAACACACCATGTCAGGCACAAAAGGGTCAGCCTGTGGATATAAATATGAAGACAAATTTGAATGAACTCGCTACAAGGACGCCATCTACCGCTCAAGAGCCTGTAAAGACTCTTGTTGGTCAAGTAATTCATTTACGCATACATGGTGACACCCCATTCAAGAAAAAAGATTCAGTGATGGAGTGGAAAAAAAACCTTGAGTTTTTGCTTCAATGTTTCTTTAGGTTTCCTCTATCTATAACCCTCACTCTTGGAGGAGACGTCATCTCTAGCCTAGGTGATTCTGATCCTTATTGTCTCTGCAGCTCAAGTATTATCCCTCAAAAGGACATTCCGAAGTGGTTCTATGGGGTGAAATATCCCACAAATAAGTTGACGACCACACTCCCTCCGAATTTGGAAAATGATGAGAACTGGTTGGGATTTGTTGTCTGCGCTGCGTTTTCAGTCCATGCGTCCCAAGCTGACGTCCTCAGTTATCTGGATTCAGAAAACTATCCAAAACTTACATGCCTTTTGCAGTGGGGTTCTGAAAGAGCTTTGAATCTCAAAGCTGGCAAGAAGACGAGCATTGTTCTCAAGAATGAATTCATGTGGTTATATCTCAGACGATTCATTTGGCTGCGATACATACCCCATCAGAAATTTAAGGATCGGTTACATATATCTGATCACCTAGAGGCTTCATTTAGGACTGATTCAATTTCTTCCAAAGTCTTGAGGATACAGGAATGTAGCCTGCGTGTTCTATACAAGAAAGACGTGGAAGAATTTAAGCAAACAATAATAGAGTGCTTTACCTGCTTCTTTGACAACGAGGATGTCATTCGGCCGTATATAGAAGAGGATTCCAGACATAACAAGAGGCCAAGTCATGCAGATGACAGAGATTCTTATGGCACTACACCCATTTGTCAGGGTGAACGAGGTTCTGCATCCAGTACTTCTCCGGAGCTAATGCCATTTTTCATTGAAACTGAACCTCCAGCTTCAACGGATTCAAGTTCAACAAAAGTTACACGGCAACTGAGAATGATAGAGTCATCGCTTGAACAACTATTTCAGGGAGACAGCGCACGCCAATATAATTATGGCTTTATTTTATCTCCTAGAGTCAGAGCAGTTTTGCCGTGGTTTAGTCATCAAAGCATTGGGAACAAAGTTAAAATTAATGCTCCTCCGGATTTGTATAAAGATAATAAATGGGTAGGCTTTGCTCTATATGTTGCCTTTACTCAGTCTCCAGGTTCACATAGTTGCTCTATGTGTAGTTTGTTTGTCTTCCCAGGACATTCAGTACATTCCGTAAACACATGCCTCGATGAAGACCAATTTTCCGGATCACGAAGACTTTGTTTCTTTCATATACCACGCGCGCGCTTCCCTGAGCAGTGTGATCAGTGTCCTGTCATTTTTGCTCGGTTTGATTGCTTTAGCCCAGGTTCGGAGGTTGAAATGTGTGGGATCCGTGTAGTATACGATGAAGATATAAAAGGGCTAGTCCAAACAATTACTCAGAGCACTATCAGGAGTCCTCCGCCTGTTTACTTCTCCCAAGATGAAAAAACAGAAATTTTTTCCCCAGGGAGGCTTGTGTTGCCCATACATATGGCCTCGAATTTGGTTGCTCACTCCAATGCCTGCGTCCTGCCCACACGAAGCGCACAAAGTCCACTGGTTCCAACCATGAAATTTGGTAAAGTAAACTTGGTCATTCATGGTGACACTCCATTCAAGAAAGATACAACAGAGTTGAAAAGGAACTTTGAGATTTTGCTTCAATCTTTCTTCAGGCTTGATCTATCCGTAAAACTCATGCTCGAAGAAGACACCATCGCTTTCTATTGGGATTGCTTCAATCATGCTTGTCTTTTCCCTCAAAAGAAAATTCCAGATTGGTTCAAAGAAAAATCTCACACATCTACGTATGTGTACCGACTTCCCGATGATTTGGAAAGTGACAACAATTTGATGGGACTTGTTGTATGTGCTGCCTTTTCAGTACACCCACTTCCAACTGACCTTGGTAATTATAAGGACTCAGAACTGAGTTCTGGTGTTAAGTGCAATTTTCGTTGGAGTTCTGATCAATCTCGCTTCATTTCTATTATAGAGGGTGTGTTCGGCGTCAGGCCAAACAACAAATTCATGTGGTTATCTCGTAGAGGATTCATTTGGCTGCAACTCATATCTGGTAATATTTTTAAGTTTGCCATGGATAAACATCGTCGTCGACTAGAAGCTTCATTTGAGAGTGGTTCCCCAGCTTTGTCGGTACAGGAATGTAGCTACCGAATCTTATACAAGCAAGACTTGGAAGAATATAAGCAAACAATTATACAGTGCTTCGCCTCTGTCTTTGACAACTTGGATCACAGTCTACCATATAAGGAAGACGATTCTCGACATAACGAGGAGCCAATTCATGAAGATGATCAGATGGACTATTTAGGAACTACAAGCTTTTCTGAGGACACCCCCCATGGAAGAGAAACAACAGTGGCTCTTCCTGAGAGTGAAACCAGTGGAAATTCCTTTAATCGTTTCAACAGCATACTGTTTGAGCCCATTTTGTACGACAACAAAACGGCAGTAATTTTCGCTGATTTTCGAGGATGGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

3624

Amino Acids

410.18

Weight (kDa)

5.83

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 25 - 192 2.1e-48 TIR domain
TIR_2 PF13676 28 - 141 6.2e-13 TIR domain
NB-ARC PF00931 225 - 381 6.1e-11 NB-ARC domain
WHD_ROQ1 PF23282 470 - 537 1.6e-15 Disease resistance protein Roq1-like, winged-helix domain
LRR_13 PF23286 729 - 817 3e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 742 - 810 5.2e-09 Leucine-rich repeat region
LRR_14 PF23598 798 - 857 9.9e-06 Leucine-rich repeat region
LRR_13 PF23286 816 - 971 1.2e-10 Disease resistance protein RPS4B-like, leucine-rich repeats
C-JID PF20160 1027 - 1167 1.2e-08 C-JID domain
C-JID PF20160 1620 - 1768 2.8e-06 C-JID domain
C-JID PF20160 2220 - 2363 1.8e-06 C-JID domain
C-JID PF20160 2855 - 3004 2.6e-06 C-JID domain
C-JID PF20160 3373 - 3521 1.2e-06 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 869, 1028, 3051, 3446, 10278
AasI GACNNNNNNGTC 1 cut(s) 7392
AatII GACGTC 3 cut(s) 5004, 8508, 8715
Acc36I ACCTGC 1 cut(s) 9053
AccB1I GGYRCC 2 cut(s) 756, 6706
AccB7I CCANNNNNTGG 4 cut(s) 1594, 5254, 7039, 7199
AccBSI CCGCTC 2 cut(s) 7833, 8336
AccII CGCG 5 cut(s) 846, 8053, 9618, 9620, 9622
AclI AACGTT 1 cut(s) 6559
AcoI YGGCCR 4 cut(s) 1486, 1585, 7190, 9074
AcyI GRCGYC 6 cut(s) 1961, 5001, 8324, 8505, 8712, 10371
AflII CTTAAG 3 cut(s) 1373, 1708, 6542
AflIII ACRYGT 8 cut(s) 148, 1459, 2860, 3652, 5479, 5686, 7417, 7582
AhdI GACNNNNNGTC 2 cut(s) 3380, 4313
AhlI ACTAGT 7 cut(s) 4238, 5444, 7379, 7408, 7544, 7573, 7840
AjiI CACGTC 5 cut(s) 2861, 3998, 5849, 8240, 9007
AjuI GAANNNNNNNTTGG 4 cut(s) 632, 664, 1280, 1312
AloI GAACNNNNNNTCC 2 cut(s) 1163, 1195
Alw21I GWGCWC 7 cut(s) 192, 1116, 4303, 5664, 7840, 8059, 9767
Alw44I GTGCAC 2 cut(s) 5660, 8055
AlwNI CAGNNNCTG 1 cut(s) 6472
Ama87I CYCGRG 3 cut(s) 191, 2632, 5120
AoxI GGCC 9 cut(s) 1486, 1585, 3014, 3672, 7190, 9074, 9110, 9855, 10376
ApaLI GTGCAC 2 cut(s) 5660, 8055
AseI ATTAAT 2 cut(s) 992, 9414
Asp700I GAANNNNTTC 9 cut(s) 1130, 2799, 2896, 4073, 5129, 5610, 7938, 8585, 8831
AspA2I CCTAGG 1 cut(s) 8518
AspLEI GCGC 7 cut(s) 1629, 8681, 9320, 9620, 9622, 9624, 9908
AspS9I GGNCC 8 cut(s) 1990, 2548, 3308, 3673, 5509, 5646, 7214, 8146
AsuC2I CCSGG 1 cut(s) 6342
AsuII TTCGAA 1 cut(s) 745
AsuNHI GCTAGC 1 cut(s) 967
AvaI CYCGRG 3 cut(s) 191, 2632, 5120
AvaII GGWCC 7 cut(s) 1990, 2548, 3308, 5509, 5646, 7214, 8146
AvrII CCTAGG 1 cut(s) 8518
BaeGI GKGCMC 5 cut(s) 5664, 6711, 6963, 7920, 8059
BaeI ACNNNNGTAYC 2 cut(s) 5202, 5235
BalI TGGCCA 3 cut(s) 1488, 1587, 7192
BamHI GGATCC 2 cut(s) 4422, 9708
BanI GGYRCC 2 cut(s) 756, 6706
BanII GRGCYC 2 cut(s) 192, 10812
BarI GAAGNNNNNNTAC 8 cut(s) 259, 291, 2787, 2819, 7836, 7868, 10239, 10271
BauI CACGAG 2 cut(s) 1107, 3332
Bbv12I GWGCWC 7 cut(s) 192, 1116, 4303, 5664, 7840, 8059, 9767
BceAI ACGGC 7 cut(s) 2372, 3178, 4027, 9061, 9281, 9358, 10848
BcgI CGANNNNNNTGC 4 cut(s) 824, 858, 1904, 1938
BciVI GTATCC 1 cut(s) 8961
BcnI CCSGG 1 cut(s) 6342
BcuI ACTAGT 7 cut(s) 4238, 5444, 7379, 7408, 7544, 7573, 7840
BfmI CTRYAG 6 cut(s) 2179, 2931, 3858, 4497, 7968, 8545
BfrI CTTAAG 3 cut(s) 1373, 1708, 6542
BfuAI ACCTGC 1 cut(s) 9053
BfuI GTATCC 1 cut(s) 8961
BglI GCCNNNNNGGC 1 cut(s) 3482
BglII AGATCT 5 cut(s) 1292, 2189, 2659, 2839, 8167
BlnI CCTAGG 1 cut(s) 8518
BlpI GCTNAGC 1 cut(s) 6975
BmcAI AGTACT 4 cut(s) 5599, 7447, 7845, 9187
Bme18I GGWCC 7 cut(s) 1990, 2548, 3308, 5509, 5646, 7214, 8146
BmeRI GACNNNNNGTC 2 cut(s) 3380, 4313
BmeT110I CYCGRG 3 cut(s) 191, 2632, 5120
BmgBI CACGTC 5 cut(s) 2861, 3998, 5849, 8240, 9007
BmgT120I GGNCC 8 cut(s) 1990, 2548, 3308, 3673, 5509, 5646, 7214, 8146
BmtI GCTAGC 1 cut(s) 971
BplI GAGNNNNNCTC 2 cut(s) 2097, 2129
BpmI CTGGAG 8 cut(s) 3522, 4173, 5409, 5694, 6705, 8103, 9213, 9471
Bpu10I CCTNAGC 2 cut(s) 3255, 9630
Bpu1102I GCTNAGC 1 cut(s) 6975
Bpu14I TTCGAA 1 cut(s) 745
BpuMI CCSGG 1 cut(s) 6342
Bsa29I ATCGAT 1 cut(s) 5788
BsaAI YACGTR 5 cut(s) 803, 1397, 5043, 6958, 10170
BsaBI GATNNNNATC 3 cut(s) 6633, 8529, 10467
BsaHI GRCGYC 6 cut(s) 1961, 5001, 8324, 8505, 8712, 10371
BsaI GGTCTC 1 cut(s) 518
Bse118I RCCGGY 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 1425
Bse8I GATNNNNATC 3 cut(s) 6633, 8529, 10467
BseCI ATCGAT 1 cut(s) 5788
BseJI GATNNNNATC 3 cut(s) 6633, 8529, 10467
BseMI GCAATG 1 cut(s) 1425
BsePI GCGCGC 2 cut(s) 9618, 9620
BseSI GKGCMC 5 cut(s) 5664, 6711, 6963, 7920, 8059
BseX3I CGGCCG 1 cut(s) 9074
BseYI CCCAGC 2 cut(s) 5833, 10507
BsgI GTGCAG 5 cut(s) 1898, 2985, 6193, 6274, 8185
Bsh1236I CGCG 5 cut(s) 846, 8053, 9618, 9620, 9622
Bsh1285I CGRYCG 2 cut(s) 3109, 9077
BshFI GGCC 9 cut(s) 1488, 1587, 3016, 3674, 7192, 9076, 9112, 9857, 10378
BshNI GGYRCC 2 cut(s) 756, 6706
BshVI ATCGAT 1 cut(s) 5788
BsiEI CGRYCG 2 cut(s) 3109, 9077
BsiHKAI GWGCWC 7 cut(s) 192, 1116, 4303, 5664, 7840, 8059, 9767
BsiHKCI CYCGRG 3 cut(s) 191, 2632, 5120
BsmBI CGTCTC 1 cut(s) 8496
BsmI GAATGC 4 cut(s) 323, 590, 5972, 8083
BsnI GGCC 9 cut(s) 1488, 1587, 3016, 3674, 7192, 9076, 9112, 9857, 10378
Bso31I GGTCTC 1 cut(s) 518
BsoBI CYCGRG 3 cut(s) 191, 2632, 5120
Bsp119I TTCGAA 1 cut(s) 745
Bsp1407I TGTACA 2 cut(s) 2072, 7866
Bsp1720I GCTNAGC 1 cut(s) 6975
Bsp19I CCATGG 4 cut(s) 9, 7805, 10458, 10726
Bsp68I TCGCGA 1 cut(s) 846
BspANI GGCC 9 cut(s) 1488, 1587, 3016, 3674, 7192, 9076, 9112, 9857, 10378
BspDI ATCGAT 1 cut(s) 5788
BspFNI CGCG 5 cut(s) 846, 8053, 9618, 9620, 9622
BspHI TCATGA 3 cut(s) 3313, 3352, 10669
BspMAI CTGCAG 4 cut(s) 2183, 4501, 7972, 8549
BspMI ACCTGC 1 cut(s) 9053
BspOI GCTAGC 1 cut(s) 971
BspQI GCTCTTC 4 cut(s) 180, 1121, 6051, 10755
BspT104I TTCGAA 1 cut(s) 745
BspT107I GGYRCC 2 cut(s) 756, 6706
BspTI CTTAAG 3 cut(s) 1373, 1708, 6542
BspTNI GGTCTC 1 cut(s) 518
BsrBI CCGCTC 2 cut(s) 7833, 8336
BsrDI GCAATG 1 cut(s) 1425
BsrFI RCCGGY 1 cut(s) 349
BsrGI TGTACA 2 cut(s) 2072, 7866
BssAI RCCGGY 1 cut(s) 349
BssHII GCGCGC 2 cut(s) 9618, 9620
BssNAI GTATAC 6 cut(s) 2855, 4236, 4435, 6247, 8158, 9721
BssNI GRCGYC 6 cut(s) 1961, 5001, 8324, 8505, 8712, 10371
BssSI CACGAG 2 cut(s) 1107, 3332
Bst1107I GTATAC 6 cut(s) 2855, 4236, 4435, 6247, 8158, 9721
Bst2BI CACGAG 2 cut(s) 1107, 3332
BstACI GRCGYC 6 cut(s) 1961, 5001, 8324, 8505, 8712, 10371
BstAFI CTTAAG 3 cut(s) 1373, 1708, 6542
BstAPI GCANNNNNTGC 4 cut(s) 2696, 6297, 6958, 7976
BstAUI TGTACA 2 cut(s) 2072, 7866
BstBAI YACGTR 5 cut(s) 803, 1397, 5043, 6958, 10170
BstBI TTCGAA 1 cut(s) 745
BstDSI CCRYGG 7 cut(s) 9, 4043, 5894, 7805, 9374, 10458, 10726
BstFNI CGCG 5 cut(s) 846, 8053, 9618, 9620, 9622
BstHHI GCGC 7 cut(s) 1629, 8681, 9320, 9620, 9622, 9624, 9908
BstMCI CGRYCG 2 cut(s) 3109, 9077
BstSFI CTRYAG 6 cut(s) 2179, 2931, 3858, 4497, 7968, 8545
BstSLI GKGCMC 5 cut(s) 5664, 6711, 6963, 7920, 8059
BstSNI TACGTA 2 cut(s) 803, 10170
BstUI CGCG 5 cut(s) 846, 8053, 9618, 9620, 9622
BstX2I RGATCY 9 cut(s) 1292, 2189, 2659, 2839, 3365, 4422, 5194, 8167, 9708
BstXI CCANNNNNNTGG 4 cut(s) 6015, 7826, 8073, 9853
BstYI RGATCY 9 cut(s) 1292, 2189, 2659, 2839, 3365, 4422, 5194, 8167, 9708
BstZ17I GTATAC 6 cut(s) 2855, 4236, 4435, 6247, 8158, 9721
BstZI CGGCCG 1 cut(s) 9074
Bsu15I ATCGAT 1 cut(s) 5788
BsuI GTATCC 1 cut(s) 8961
BsuRI GGCC 9 cut(s) 1488, 1587, 3016, 3674, 7192, 9076, 9112, 9857, 10378
BsuTUI ATCGAT 1 cut(s) 5788
BtgI CCRYGG 7 cut(s) 9, 4043, 5894, 7805, 9374, 10458, 10726
BtgZI GCGATG 3 cut(s) 325, 9273, 10063
BtrI CACGTC 5 cut(s) 2861, 3998, 5849, 8240, 9007
BtsI GCAGTG 5 cut(s) 5999, 7564, 8197, 8771, 9641
BtuMI TCGCGA 1 cut(s) 846
BveI ACCTGC 1 cut(s) 9053
CaiI CAGNNNCTG 1 cut(s) 6472
CciI TCATGA 3 cut(s) 3313, 3352, 10669
CfoI GCGC 7 cut(s) 1629, 8681, 9320, 9620, 9622, 9624, 9908
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 8 cut(s) 1990, 2548, 3308, 3673, 5509, 5646, 7214, 8146
ClaI ATCGAT 1 cut(s) 5788
CpoI CGGWCCG 1 cut(s) 5646
CseI GACGC 7 cut(s) 1190, 1969, 6072, 8332, 8688, 9877, 10360
CsiI ACCWGGT 1 cut(s) 375
CspCI CAANNNNNGTGG 2 cut(s) 3910, 3945
CspI CGGWCCG 1 cut(s) 5646
DraI TTTAAA 6 cut(s) 510, 1441, 4342, 5902, 6040, 6447
DrdI GACNNNNNNGTC 1 cut(s) 7392
DriI GACNNNNNGTC 2 cut(s) 3380, 4313
DseDI GACNNNNNNGTC 1 cut(s) 7392
EaeI YGGCCR 4 cut(s) 1486, 1585, 7190, 9074
EagI CGGCCG 1 cut(s) 9074
Eam1105I GACNNNNNGTC 2 cut(s) 3380, 4313
EciI GGCGGA 5 cut(s) 4482, 7483, 7645, 8205, 9771
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 9074
Eco105I TACGTA 2 cut(s) 803, 10170
Eco24I GRGCYC 2 cut(s) 192, 10812
Eco31I GGTCTC 1 cut(s) 518
Eco32I GATATC 3 cut(s) 386, 2994, 7144
Eco47I GGWCC 7 cut(s) 1990, 2548, 3308, 5509, 5646, 7214, 8146
Eco52I CGGCCG 1 cut(s) 9074
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 3 cut(s) 191, 2632, 5120
EcoICRI GAGCTC 1 cut(s) 190
EcoO109I RGGNCCY 2 cut(s) 2548, 3308
EcoRI GAATTC 3 cut(s) 4368, 6462, 8831
EcoRV GATATC 3 cut(s) 386, 2994, 7144
EcoT22I ATGCAT 3 cut(s) 1566, 4064, 5972
EcoT38I GRGCYC 2 cut(s) 192, 10812
Esp3I CGTCTC 1 cut(s) 8496
FauI CCCGC 2 cut(s) 119, 692
FauNDI CATATG 4 cut(s) 3301, 4534, 6204, 9852
FriOI GRGCYC 2 cut(s) 192, 10812
GlaI GCGC 7 cut(s) 1628, 8680, 9319, 9619, 9621, 9623, 9907
GsaI CCCAGC 2 cut(s) 5837, 10511
GsuI CTGGAG 8 cut(s) 3522, 4173, 5409, 5694, 6705, 8103, 9213, 9471
HaeIII GGCC 9 cut(s) 1488, 1587, 3016, 3674, 7192, 9076, 9112, 9857, 10378
HgaI GACGC 7 cut(s) 1190, 1969, 6072, 8332, 8688, 9877, 10360
HhaI GCGC 7 cut(s) 1629, 8681, 9320, 9620, 9622, 9624, 9908
Hin1I GRCGYC 6 cut(s) 1961, 5001, 8324, 8505, 8712, 10371
Hin6I GCGC 7 cut(s) 1627, 8679, 9318, 9618, 9620, 9622, 9906
HinP1I GCGC 7 cut(s) 1627, 8679, 9318, 9618, 9620, 9622, 9906
HincII GTYRAC 7 cut(s) 477, 2013, 2331, 4658, 4726, 8619, 10478
HindII GTYRAC 7 cut(s) 477, 2013, 2331, 4658, 4726, 8619, 10478
HindIII AAGCTT 8 cut(s) 1276, 1840, 2789, 4607, 6413, 6545, 10485, 10705
Hpy99I CGWCG 9 cut(s) 83, 1523, 2862, 3164, 4002, 5853, 8031, 10476, 10479
Hsp92I GRCGYC 6 cut(s) 1961, 5001, 8324, 8505, 8712, 10371
HspAI GCGC 7 cut(s) 1627, 8679, 9318, 9618, 9620, 9622, 9906
LguI GCTCTTC 4 cut(s) 180, 1121, 6051, 10755
MabI ACCWGGT 1 cut(s) 375
MauBI CGCGCGCG 1 cut(s) 9618
MbiI CCGCTC 2 cut(s) 7833, 8336
MfeI CAATTG 5 cut(s) 228, 597, 997, 1539, 3938
MflI RGATCY 9 cut(s) 1292, 2189, 2659, 2839, 3365, 4422, 5194, 8167, 9708
MlsI TGGCCA 3 cut(s) 1488, 1587, 7192
MluNI TGGCCA 3 cut(s) 1488, 1587, 7192
Mox20I TGGCCA 3 cut(s) 1488, 1587, 7192
Mph1103I ATGCAT 3 cut(s) 1566, 4064, 5972
MroXI GAANNNNTTC 9 cut(s) 1130, 2799, 2896, 4073, 5129, 5610, 7938, 8585, 8831
MscI TGGCCA 3 cut(s) 1488, 1587, 7192
Msp20I TGGCCA 3 cut(s) 1488, 1587, 7192
MspA1I CMGCKG 3 cut(s) 5467, 6089, 7567
MspCI CTTAAG 3 cut(s) 1373, 1708, 6542
MssI GTTTAAAC 1 cut(s) 5902
MunI CAATTG 5 cut(s) 228, 597, 997, 1539, 3938
Mva1269I GAATGC 4 cut(s) 323, 590, 5972, 8083
MvnI CGCG 5 cut(s) 846, 8053, 9618, 9620, 9622
NciI CCSGG 1 cut(s) 6342
NcoI CCATGG 4 cut(s) 9, 7805, 10458, 10726
NdeI CATATG 4 cut(s) 3301, 4534, 6204, 9852
NheI GCTAGC 1 cut(s) 967
NmeAIII GCCGAG 1 cut(s) 3230
NmuCI GTSAC 8 cut(s) 908, 940, 3508, 5180, 6965, 8390, 9965, 10202
NruI TCGCGA 1 cut(s) 846
NsiI ATGCAT 3 cut(s) 1566, 4064, 5972
NspV TTCGAA 1 cut(s) 745
PaeI GCATGC 3 cut(s) 1434, 6238, 8001
PaeR7I CTCGAG 1 cut(s) 191
PagI TCATGA 3 cut(s) 3313, 3352, 10669
PasI CCCWGGG 2 cut(s) 887, 9827
PauI GCGCGC 2 cut(s) 9618, 9620
PciI ACATGT 6 cut(s) 148, 3652, 5479, 5686, 7417, 7582
PciSI GCTCTTC 4 cut(s) 180, 1121, 6051, 10755
PcsI WCGNNNNNNNCGW 1 cut(s) 3430
PctI GAATGC 4 cut(s) 323, 590, 5972, 8083
PdmI GAANNNNTTC 9 cut(s) 1130, 2799, 2896, 4073, 5129, 5610, 7938, 8585, 8831
PflMI CCANNNNNTGG 4 cut(s) 1594, 5254, 7039, 7199
PmeI GTTTAAAC 1 cut(s) 5902
Ppu21I YACGTR 5 cut(s) 803, 1397, 5043, 6958, 10170
PpuMI RGGWCCY 2 cut(s) 2548, 3308
PscI ACATGT 6 cut(s) 148, 3652, 5479, 5686, 7417, 7582
PshBI ATTAAT 2 cut(s) 992, 9414
PsiI TTATAA 5 cut(s) 869, 1028, 3051, 3446, 10278
Psp124BI GAGCTC 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 6559
Psp5II RGGWCCY 2 cut(s) 2548, 3308
PspFI CCCAGC 2 cut(s) 5833, 10507
PspPI GGNCC 8 cut(s) 1990, 2548, 3308, 3673, 5509, 5646, 7214, 8146
PspPPI RGGWCCY 2 cut(s) 2548, 3308
PstI CTGCAG 4 cut(s) 2183, 4501, 7972, 8549
PstNI CAGNNNCTG 1 cut(s) 6472
PsuI RGATCY 9 cut(s) 1292, 2189, 2659, 2839, 3365, 4422, 5194, 8167, 9708
PteI GCGCGC 2 cut(s) 9618, 9620
PvuII CAGCTG 2 cut(s) 5467, 7567
RruI TCGCGA 1 cut(s) 846
Rsr2I CGGWCCG 1 cut(s) 5646
RsrII CGGWCCG 1 cut(s) 5646
SacI GAGCTC 1 cut(s) 192
SalI GTCGAC 1 cut(s) 10476
SapI GCTCTTC 4 cut(s) 180, 1121, 6051, 10755
Sau96I GGNCC 8 cut(s) 1990, 2548, 3308, 3673, 5509, 5646, 7214, 8146
ScaI AGTACT 4 cut(s) 5599, 7447, 7845, 9187
SexAI ACCWGGT 1 cut(s) 375
SfcI CTRYAG 6 cut(s) 2179, 2931, 3858, 4497, 7968, 8545
Sfr274I CTCGAG 1 cut(s) 191
SfuI TTCGAA 1 cut(s) 745
SinI GGWCC 7 cut(s) 1990, 2548, 3308, 5509, 5646, 7214, 8146
SlaI CTCGAG 1 cut(s) 191
SnaBI TACGTA 2 cut(s) 803, 10170
SpeI ACTAGT 7 cut(s) 4238, 5444, 7379, 7408, 7544, 7573, 7840
SphI GCATGC 3 cut(s) 1434, 6238, 8001
SspI AATATT 4 cut(s) 460, 1513, 5619, 10444
SstI GAGCTC 1 cut(s) 192
TaqII GACCGA 2 cut(s) 3095, 5634
TauI GCSGC 3 cut(s) 3016, 4277, 6770
TseFI GTSAC 8 cut(s) 908, 940, 3508, 5180, 6965, 8390, 9965, 10202
Tsp45I GTSAC 8 cut(s) 908, 940, 3508, 5180, 6965, 8390, 9965, 10202
Van91I CCANNNNNTGG 4 cut(s) 1594, 5254, 7039, 7199
Vha464I CTTAAG 3 cut(s) 1373, 1708, 6542
VneI GTGCAC 2 cut(s) 5660, 8055
VpaK11BI GGWCC 7 cut(s) 1990, 2548, 3308, 5509, 5646, 7214, 8146
VspI ATTAAT 2 cut(s) 992, 9414
XbaI TCTAGA 1 cut(s) 4126
XcmI CCANNNNNNNNNTGG 3 cut(s) 5464, 7399, 9332
XhoI CTCGAG 1 cut(s) 191
XmaJI CCTAGG 1 cut(s) 8518
XmnI GAANNNNTTC 9 cut(s) 1130, 2799, 2896, 4073, 5129, 5610, 7938, 8585, 8831
ZraI GACGTC 3 cut(s) 5002, 8506, 8713
ZrmI AGTACT 4 cut(s) 5599, 7447, 7845, 9187
Zsp2I ATGCAT 3 cut(s) 1566, 4064, 5972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.