Rroxscaffold_4G00313100

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016427
Physical Location & Seq
Reverse (-)
36306443 .. 36328135
21693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00313100.1

Sequence Viewer

Length: 10845 bp
ATGGCTTCCATGGTGATCCAAACCTCCTCAACTTCTACTTCTCCTCCTCCACCTTTGAACCATCCAATAAAATATGATGTTTTTCTCAGTTTTAGAGGTGCGGACACCCGCACAAAGTTTACAGACCATTTATACAAGGAATTACATGTACGGGAAGGCATCCCCACCTTTAGGGATTCTGAAGAGCTCGAGAAGGGAGAAGATCTTTCACAACTCTTTGAGGCAATTGAAAAATCGAAAATTGCAGTTGTCATTCTTTCAAGTAACTATGCTTCTTCGACATGGTGTTTGAGAGAAGTTGCCAAGATTGCCGAATGCAGAAATAAGACCGGACTCATCGCTTTGCCGGTATTCTATGAGATCGAACCAACCCAGGTACGAAGCCAGACAGGAAGTTTCAAGAAATACTTTGATGAACATGAACAGGAATACAAGGACAGCATAGAGAAGGTCGATATTTGGAGGAAAGCGTTGACTGAAATAGGTGGTCTCTCCGGATGGGATTTAAAAGACAGGTTGGAAACCTCTGTTATTGAAGAGATAGTAAAATGTGTCGAGACAAAATGGAAGCTCAAATTTAATCCTGCATTCTCAATTGAGGATTTCAAGGATTTTGTTGGGATGGATCGTGTGAGGAAAATCGAATTGGACTTGGATATAGAGACATCGGATAAAATCGGTGTTATTGGAATTTGCGGGATGCCAGGAGTAGGTAAGACAACGATTGCAGAAGTTGTGTTTCGAAGAAATTGGCACCATTTTGAAGCTAACAGTTTCCTTGCTAATGTTGGAGAGATAAGTAAGACGAAAGGATTATTGCATATACAGGAGCAACTTTATCGCCACTTGTTGGATAGCGAAGTTATAACTATGCATGATGTTCCTGCGGCAAGGAGAAAATTGCGTCACAAAAAGGTGCTTATCATTCTTGATGGTGTGACTGAGTTACAATCTGTTTTTGAGCTAGCAGGAAGCGATGTTAAAGAATTAAACAATTGGTTTGGTGGAGGCAGTAGAATCATTATAACCACAATAAATGAAAAGTTGTTGAAGGATTATGAGGCAAAAACACACAAGATTGAGATACTTAATGAAAATGAAGCTCGTCTGCTCTTCTTCCGGAAAGCTTTCAGCAAAGACCATCCTCTGCATGATTGTACTGAGTTGGACTTCAAGATAGACCGTACTATGCGTCAGTATGCTGAGTTGTCTTACAAATTTGTGGATTTAACTGACGGTCTTCCTTTGTCTGTTGTAGTTTTGGGAAGCTTGTTATTGAACAGATCTTTGGATGAATGGGAAGCTGAACTTCAAACACTAGAAGCTGATAATGATTCTAATGATGAAAAAACTTTTGGGATTCTTAAGCTATGTATTGATGGATTACGTGATAAGGGAAAGGAAATTTTCTTGGACATTGCATGCTTCTTTAAAGGAGATGACAAAAAACGAGTAGAAAGGATATTAGAAGGCTGCGGCCTCAATCCAGGCATTGAATTGAACATTGTCATCGAGAAATTTCTAGTAACAATTGTGGGAGGAAAATTGTGGATGCATGATTTGCTACAAAAAGCTGGCCAGAAAATAGTTATTGGAGAATCCAAATTACTAGGGGAACGCAGCAGATTGTGGGATCGTAAAGAAGCTATTTCTGTACTTAAGCAAGATAAGGGGACAAGCGCCGTCGGAGGTATTTTCTTAAGCTCACCTCAACCAGTCGAAGTGCAATTGAAGGCTGACTCATTTTCAAAAATGGACTTTCTTAGATTGTTGAAAATAAAGAATGTGATATTTTCTAGATGCCATGGATACAATCTTTCAAACGAATTAAGCTTCTTGGAATGGCATGACTTTCCTTCAACATCTCTGCCTTCTGAGTTTGAACCGGAGAATCTTGTTGAACTGCACTTGCCTCGAAGCCAAATAAAGCAATTATGGAAGGATAATATGACGCCTTCTTTGGAAAAGTTGGTTGTGATGGACCTTAGTGATTGCAAAGAGTTGATCAGTACCCCAGACTTCCAGTTAGTGCCAAATCTTGAGAGCCTAGTTCTCACAGGTTGTACAGGATTGTCTAAGGTACACCTACCCACTGGAGATCAGCTCCAAAAGCTCATTTCATTGAATCTGGAAGGTTGTGAATCTCTTAGCAGTCTTCCCAACAGTATCTGCAGCTTGAGATCTCTCACAACTTTCATTCTTTCGGGATGTTCCAGACTTACAAATCTTCCGGAGAAGTTTGGGGAAAACATGAAACAATTATCCGGACTTGATTTGGAGGGGACAGCTATAAAAGGGCTACCAACATCAATTAAGCACTTGACTGGTCTTATTCGGCTCAATCTAAAAGACTGCAAGAACCTTTTAAATCTGCCAACTATCATTTGTAGTTTGACAAAACTTCAAGTTCTCAACCTATCTGGCTGCTCAAATCTTGCTGCATTGCCAGAAAACCTGGGAAGTTTAGTAGGTTTGAAGGAACTTGATGCAAGCAGAAGTTGTATAAGACAAGTACCTTCCTCCATTCTACTTCTGAAGGACCTTGAAAGTTTATCTTTCTGTGGATGTGGAGGTTTGCCGCCATCAGCATGTCCCATGGGTTTGCAGTTGCCTGCTTCATTCTCGGGATTAGATTCTTTGACAAAATTGGATCTAAGCTATTGCAAACTGTCTGGTGGAGCAATCCCTGCTGATCTTGACTGCTTATCTTCACTTAATCATCTAAATTTAAGTGGGAACAGTTTAGTGAGTGTACCGGAAAGCATCACTAAACTTTCTAAGCTTGAAGTCCTTCTATTGAATGATTGTAGCGAGCTTCGATCATTACCTGATCTTCCATCAAGTATACGACGTGTTTTTGCACGGAATTGTCCTCTGCTCAGAACTTATTCAAATAAATTAACTGTGTGGAGTTCAACTGCTACAGGATTTTGTTTCATAAATTCCCAAAGTAGTGAAGAACGTAAACTTCAGAGGATTCCGATATCAGAACAACGTCTTCTGCGGCCTCATTTGCAAAAGTTCTATGAGGATATAATTTATAAAGGTAGTGGTTTTGAATATATTACTCCTCACACTGAAATTCCATCATGGTTCGGTCGCCGGAGAACAGGGTCATCTATAACACTCCAGCTACCTCTAGATTATTTCGACGGCAAACGTGAGTTGATGGGACTTGCTCTATGCTTTGTTTATGAAGCGCAGGAGCGTGAGAATATGGAATCAACAGCTTCTAACATCTCGGCTCAGGAAGTAAAATATAGTTGCAATTACAGTTGTCGCTTATCCACATATGGAGGTCCTCATGATGACTGTCCCCTCCTCGTGTGTAAACTCATGGATCATGATTATGTTGGATCTTTTCGACATTGGGTCTATATAGCAGGAGGGCTGTTTGCAGAAAGGTTAATCAAACGCTCTGTTCGAGCTGAAGTTATAATCAACAGACCAGGGGTGAAAGTGAAAGCCTGTGGGGCAAGTCTAATATACTCTGGAGGTGTGACAGAATTTGTTTGGAATTTGAATCTCCGTGATGAAATTCATATGAGAAATCGGTCGAGTGGGGATCAAAAGGAAAAATCTAACGATCAGTTAAATAAACAAGAACAAGAAACTATTTGTGATCATCTGCTGGAACTAAAACATGTACCAGTCCAATATCAGGCCCAAATGAATCGCATGATCTCATTGTATGATACTAAACGAAGTCACAAGCCATCCCTTGACCATGATGCCGGATCATCTGGTAGAGCCAGCAGCAGCACTGAAGAACCTCATCAAAGATTAGAAATACCAAAATCCAATGATCAGTCCAACAAACAAGATCAAGAGACTAATTATGGTTGTGCAACAGACAAAAGATTCTTGATTGAAATTGAACCACACAATTCAAGAGATAGTTCAACTTCAACCGCGATCTTTGATGATCAATTGAGAACAAATGTAGAGTCATTCCTTGAGGAACTATTTGAGCTAGGAGGCAAAGCACGTCGCAAGGATTTAGGTTTCATTTTCCCTCTCCGAGCAATTTTGCCGTGGTTTAATCATCAATGCATTGGGAACGTATTCATTCCAGAAAAAGAAAGAATTGGGAGTTCAGTAAGCCTACCTCTTCCTCTAGAATTGCATAACAATAAGGAATGGGTAGGATTTTCTGTATATGTAGCCTTCACTCTGCCTCCAGGTGTTTCACTTGAAAAATCATGTTGCTTCAAGTCTGTATTGTATACTAGTGATGGTCATTTTTATTGCCTAAAATTATCGGCGGCTTGTGAAGACAATTTTAAGGGAGCACATCGACTCCTTGTCATCCACATACCAAGAGGGCGTTTTAAAAAACAGTTGAATGAGTGCGTTGGAATTCGTGCTGCTTTTGTCTCCTCAACTCCAAGTGTGGAGGCTGAGATGTGTGGGATCCGTGTAGTATACGAGCAAGATTTGAAAGGGTTAATCCAAACAATTACCCAATGCACCATAAGAAATCCGCCTGCAGTCTACTATGGACTTGCCCATTCATTTGTGCCGTATGGAAGAGAGTCTTTCATGTTAGCTATTATGGAGCATAGTTTGATTGAAGCAGCTAAATCCAGCAAAAGGAATCTTTCAACCTTGCAAGAGCCTTTAACAGATTCAAAGTTCCTCAGTGGTGAACAAATTTACTTAGAGATAGAGGCTGGAACTCCATACATGCCACACAAGTTCGAAGATTCCATAGTTGACTGGAAAAAAAACCTTGAGCTTTTGCTTGAATGTTTCTTTACCCTTTCCGATCTATCTATTAAACTCACTCTTCACAGAAGCACAACCTCTTTCTCAAGGGAATTTGATCCTTGTTCTGGTATTTTCCTTCAAAGAGAAATTCCAGAGTGGTTCACACCACAATATCCCTCCAAGAGTATGGTGTTGGAACTTCCTCCAAATTTGGAAAATGATGTGAATTTCAATGGACTTGTTGTATGTGCTGCCTTTTCAGTCCATGCCTCTGAAGCTGACGTCCTCAAATATCTGAAATCAGGACTCCATCCCCAACTTACGTGCCATTTCCAAAATTTGGGTTCTGAATCTTCTGATCAATCTTATGGTCTTACAGCTCCCATGATTGATACCAGTCCCGAGAACAAATTCATGTGGTTATATCGCAGAGGATTCATTTGGCAGGAATACCTACCCCGTGACTTATTTAAGGATCTGCTGCATAAAGATACTTCAGTCAAGGTTTCATTTAGGAGTGATTCTTCCCAAGTCTTGGAGGTACAGAAATGTAGCTTCCGCATCTTATACAAGCAAGATGTGGAAATATTCAAGCAAATGTTAACAGAGTGCTTTACCTCCTTCTTTGACAATTACGACATCATTCGAGCATATTTAGTACAGGATTCTGGAGATTACAGCCACTTAAATCATCATGCAGTTACACCTTTTTGTCATGGTGAAACTAGTGGAAAAGCCAATGATCAGCTGGAACTAGGACATGTACCTGCCCAATATCAGCCTCAAATGGACCGCATGATCTCTTTGTATGATACTAAAGGAAGTAACGTGCAATCCCTTGACCATGATGCAGGATCATCTAGTAGAACTGGCAGCAGTACTGAAGAACCTCTTCAAATATTAGAAAGACCAGAATCCAATGATCGGTCCGATGAACAAGTGCACGAAACTAATTCTGACCTTACACATGTAGCAGAATGTGGTTATGCTTCAGACACTAGATTCTTGATTGAAATTGAACCACACACTTCAAGAGATAATTCAAGTTCAACCAAGATTGTTGGTGATCAATTGAGAACAAATGTAGAGTCATTCCTTGAAGAACTATTTGAGCTGGGAGGCAAAGCACGTCGCTATGATTTATGTTTCATTTTCTCTCTTCGAGCAATTTTACCGTGGTTTAAACATCAAGGCATTGGGAACGTGATAGGTGTACCTCTTCCTTTAGAATTGTATAACAACAAGGAATGCATAGGATTTGCTCTATATGTGATCCTCACTCTGCCCCCAGGTGCTTGGCTTAAAGAAGGTTCTTGTTTTAAAATTGTGTTGTTTACTGAAGAGCCAAGGTATTGCCTAAACTTAGCGCCCACTGGTGAAGACAATTTCATGGGTTCACATCGGCTCCTGGTTATTCACGTACCACAAAGACATTTTGGTGAACAGTTGAACCTCTGGAGTAGCATTCGTGCTTCTTTTGAATCCCTTATGCCAGGTGTGGAGGTTGAGATGTGTGGTATGCGGGTAGTATACCAGGAAGATTTGAAAGGGTTAATCCAAACCATTACCAACTGCACAATTTGCAGTCCCTCTGCTTACTATGGACTTGCCCAACCATTTGTGCCGGGAAGGTGGTCTGAAGTGCTCACACACATGAGGAATAGTTTGGTTGAAGCAGCTAAATCCAGCAAGAGGAAGTTTTCAACCTTGCAAGAGCCTTTAACAGATTTAAAATCCATCCAAGGAATTCAGTTAATGATACTTGCTGTAACTCCATTTACTTCACTCAAGAAAACAGAAACAGTAGTCAAGTGGAAAAGAAACCTTAAGCTTTTGCTTCAACGTTTCTTAACCCTTTCTGGTCTATCAATAAGTCTCATTCTTAGAGGAGGCAGAATTTCTTTCTCAGAGGATCGTAATCTTCATAGTGGTATTTTCTTTCAAAAGGAAATTCCAGACTGGTTTACACCACACCACTCTGCCAGTATGGTGCCCGAACTTCCTCCAGATTTGGAAAATGATATGAATTTGATGGGTTTTGTTGTATGTGCTGCCTTTTCAGTCCACGCCTCTAAAGCTGATGTCCTCAAATATCTGGATTCAGGACACCATCCCGAACTTATGTGCCATTTCCAATCAAGTTCTGACTATTCTGGTGTAGTAGTTCGTAAAATGGTTGGCATCAGTCCGAAGAACAAATTCATGTGGTTTTATCGTAGAGGATTCATTTGGCTGCATTACATACCCCGTCACAATGTTGAGCATCTCTTCAATAAACTATCTGAACTACAGGTTTCATTTGAGAGTGATTCTTCCCAAGTATTGGCGGTACAGAAATGTAGCTTCCGTTTCTTATACAAGCAAGATGTAGAAGAATTTAAGCAAACAATAATAGAGTGCTTTACCTCCTTCTTTGACAACGAGGATATCATTAAGCGATATGAAGAAGAGGATTCTGGACATAATAAGTGGCCAAATCATGGAGATGAGATGGCACCATCTAGTACAACTGGTGGCAACATTGTCATTGAGCAAACTCACAATGAGAGATTAGATGTACCCATAACTGATAGGAAGGGGAAGGGCCCTTCTGATGTCTCCTTAGATGAAGCAGATGAGAGAGATTATTATGGAACTACTACACCTGTTTGTCAGGGTGAAACTAGTGGACAATCCAGTCATCAAGTGGAACTAGTTACACATGTAGTAGAAGAAGAACATGGTTTTAGTACTTCTCCTCCGGAGCTAATCCCATTCTTATCTGAAATTGAACCTTCCGCCTCAACAGGTTCAAGTTCAACCAAATTTGAAGGTGATCAGTTCAGAACTAGTGGAAAATGCAGTGATCAGCTGGAACTAGTTACACATGTAGTAGAAGAAGAACACGGTTCTAGTTGTCGTCCGGAGCTAATCCCATTCTTATTTGAAATTGAACCTTCCGCCTCAACAGATTCAAGTTCAACCAAATTTGAAGGTGATCAGTTCAGAACAAATGTGGAGGCTTTGCTCACAGTAATGTTTCGACATAAGATAGTATATGACTATGAACATGGTTTTATTTTATCTCCGAGAGTTGGAGCAATTTTGCCATGGTTTAATCACCAAACCATTGGGAGCGAAGCACTAGTACTTCATCTTCCTCCGGATTTGTACAAGGATAAGAAATGGGCAGGGTTAGCTCTATATGTTGCTTTCACTGTGCCCCCAGGTTATACGGAAAACATTCTATGTCGCTGTTCTTTGTCTACCTCCGCAGGACATGCAGAAGCGATCACAATAGCATGCTCCCAAGGCAATTTTTCCGGATCACGACGACTCTGTTTCATTCATAAACCGCGTGCACGTTTTCCAGAACAGTGGAATACGTGTAGCTACATTTCTGCCTTCTTTGAAGTCCTTACTCCAGTTGTGGATGTTGAGATGTGTGGGGTCCATCTAGTATACGAGCAAGATCTGATAGGGATAATCCAAACAATTACCCACTGCACTATCAGGAGTCCGCCTGTTTACTATGGAATTGGACGTGCTAACACACCATGTCAGTCGCAAAAGCAGCCTGCGGATATAAATATGAAGACAAATTTGAATGAACTCGCTACAAGGACGCCATCTACCGCTCAAGAGCCTGTAAAGACTCTTGTTGGTCAAGTAATTCATTTACGCATACATGGTGACGCCCCATTCAAGAAAAAAAGATTCAGTGATGGAGTGGAAAAAAAAAACCTTGAGTTTTTGCTTCAATGTTTCTTTCGGTTTCCTCTATCTATAACCCTCACTCTTGGAGGAGACGTCATCTCTAGCCTAGGTGATTCTGATCCTTATTGTCTCTGCAGCTCAAGTATTATCCCTCAAAAGGACATTCCGAAGTGGTTCTGTGGGGTGAAATATCCCACAAATAAGTTGAAGACCACACTCCCTCCGAATTTGGAAAATGATGAGAACTGCTTGGGATTTGTTGTCTGTGCTGCGTTTTCAGTCCATGCGTCCCAAGCTGACGTCCTCAGTTATCTGGATTCAGAAAACTATCCGAAACTTACATGCCTTTTGCAGTGGGGTTCTGAAAGAGCTTTGAATCTCAAAGCTGGCAAGAAGACGAGCATTGTTCTCATGAATGAATTCATGTGGTTATATCTTAGACGATTCATTTGGCTGCGATACATACCCCATCAGAAATTTAAGGATCGGTTACATATATCTGATCACCTAGAGGCTTCATTTAGGACTGATTCAATTTCTTCCAAAGTCTTAAGGATACAGGAATGTAGCCTGCGTGTTCTATACAAGAAAGACGTGGAAGAATTTAAGCAAACAATAATAGAGTGCTTTACCTGCTTCTTTGACAACGAGGATGTCATTCGGCCGTATATAGAAGAGGATTCCAGACATAACAAGTGGTCAAGTCATGCAGATGACAGAGATTCTTATGGCACTACACCCGTTTGTCAGGGTGAACGAGGTTCTGCATCCAGTACTTCTCCGGAGCTAATGCCATTTTTCATTGAAACTGAACCTCCAGCTTCAACGGATTCAAGTTCAACCAAAGTTACACGGCAACTGAGTATGATAGAGTCATCGCTTGAACAACTATTTCAGGGAGGCAGCGCACGCCAATATAATTATGGCTTTATTTTATCTCCTAGAGTCAGAGCAGTTTTGCCGTGGTTTAGTCATCAAAGCATTGGGAACGAAGTTAAAATAAATGCTCCTCCGGATTTGTATAAAGATAATAAATGGGTAGGCTTTGCTCTATATGTTGCCTTTACTCAGTCTCCAGGTTCACATAGTTGCTCTATGTGTAGTTTGTCTGTCTTCCCAGGACATTCAGTACATTCCATAAACACATGCCTCGATGAAGACCAATTTTCCGGATCACGAAGACTTTGTTTCTTTCATATACCACGTGCGCGCTTCCCTGAGCAGCGTGATCAGTGTCCTGTCATTTTTGCTCGGTTTGATTTCTTTAGCCCAGGTTCGGAGGTTGAAATGTGTGGGATCCGTGTAGTATATGATGAAAATATAAAAGGGCTAGTCCAAACAATTACTCAGAGCACTGTCAGGAGTCCTCCGCCTTTTTACTTCTCCCAAGATGAAAAAACAGAAATTTTTTCCCCGGGGAGGCTTTTGCTGCCCATACATATGGCCTGCATCTTGCCCACACGAAGCGCACGAAGTCCACTGGTTCCATCCATGAAATTTGGTAAAGTAAACTTGGTCATACATGGTGACACTCCATTCAAGAAAGATACGTATACAACCGAGTGGAAAAGAGACTTTGAGATTTTGCTTCAATCTTTCTTCAGGCTTGATCTATCCGTAAAACTCATTCTCGAAGAAGACACCATCGCTTTCTATCAGGATTGCTTCAATCATGCTTGTCTTTTCCCTCAAAAGAAAATTCCAGATTGGTTCAAAGAAAAATCTCTCACATCTACGTATGTGTATCCACTTCCCGATGATTTGGCAAGTGACAACAATTGGATGGGACTTGTCGTATGTGCTGCCTTTTCAGTACACCCACTTCCAACTGACCTTGGCAATTATAAGGACTCAGAACTGAGTTCTGATGTTAAGTGCAATTTTCGGTGGAGTTCTGATCCTTCTCGATTCATTTCTATCAGAGAGGGTGTGTTCGGCGTCAGGCCAAACAACAAATTCATGTGGTTATCTCGTAGAGGATTCATTTGGCTGCAATTCATATCTGGTGAAATTTTTAAGTTTGCCATGGATAAACATCGTCGTCAACTAGAAGCTTCATTTGAGAGTGGTTCCCCAGCTTTGTCGGTACAGGAATGTAGCTACCGAATCTTATACAAGCAAGACTTGCAAGAATATAAACAAACAATTATACAGTGCTTCGCCTCTGTCTTTGACAACTTGGATCACAGTCTACCATATAAGGAAGACGATTCTCGACATAACGAGGAGCCAATTCATGAAGATGATCAGATGGACTCTTTAGGAACTACAAGCTTTTCTGAGGACACTCAACATGGACGAGAAACAACAGTGGCTCTTCCTGAGAGTGAAACCAGTGGAAATTCCTTTAATCGTTTCAACAGCATACTGTTTGAGCCCATTTTGTACGACAACAAAACGGCAGTAATTTTCGCTGATTTTCGAGGATGGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

3614

Amino Acids

409.42

Weight (kDa)

5.86

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 24 - 191 3.5e-46 TIR domain
TIR_2 PF13676 27 - 149 8e-13 TIR domain
NB-ARC PF00931 222 - 380 1.3e-13 NB-ARC domain
NACHT PF05729 230 - 379 4.6e-06 NACHT domain
WHD_ROQ1 PF23282 465 - 531 1.4e-15 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 695 - 807 2.2e-08 Leucine-rich repeat region
LRR_13 PF23286 726 - 812 2.7e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_13 PF23286 814 - 979 1.4e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
C-JID PF20160 1024 - 1163 1.9e-07 C-JID domain
C-JID PF20160 1617 - 1765 7.8e-07 C-JID domain
C-JID PF20160 2218 - 2361 1.1e-06 C-JID domain
C-JID PF20160 2853 - 3002 1e-05 C-JID domain
C-JID PF20160 3364 - 3511 1e-06 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 866, 1025, 3042, 3437, 10251
AasI GACNNNNNNGTC 1 cut(s) 7386
AatII GACGTC 3 cut(s) 4995, 8502, 8709
Acc36I ACCTGC 2 cut(s) 5485, 9047
AccB1I GGYRCC 3 cut(s) 753, 6700, 7204
AccB7I CCANNNNNTGG 5 cut(s) 850, 5050, 5245, 7033, 7190
AccBSI CCGCTC 1 cut(s) 8327
AccI GTMKAC 9 cut(s) 2845, 4226, 4425, 4494, 6240, 7955, 8151, 9959, 10597
AccII CGCG 3 cut(s) 3914, 8047, 9616
AclI AACGTT 1 cut(s) 6553
AcoI YGGCCR 3 cut(s) 1576, 7181, 9068
AcvI CACGTG 1 cut(s) 9611
AcyI GRCGYC 7 cut(s) 1952, 4992, 8315, 8385, 8499, 8706, 10344
AflII CTTAAG 5 cut(s) 1364, 1658, 1699, 6536, 8956
AflIII ACRYGT 8 cut(s) 145, 2851, 3643, 5470, 5677, 7411, 7576, 8075
AhdI GACNNNNNGTC 2 cut(s) 3371, 4304
AhlI ACTAGT 7 cut(s) 4229, 5435, 7373, 7402, 7538, 7567, 7834
AjiI CACGTC 5 cut(s) 2852, 3989, 5840, 8234, 9001
AjuI GAANNNNNNNTTGG 6 cut(s) 629, 661, 1271, 1303, 1338, 1370
Alw21I GWGCWC 6 cut(s) 189, 4294, 5655, 6357, 8053, 9761
Alw44I GTGCAC 2 cut(s) 5651, 8049
AlwNI CAGNNNCTG 1 cut(s) 2169
Ama87I CYCGRG 4 cut(s) 188, 2623, 5111, 9820
AoxI GGCC 9 cut(s) 1477, 1576, 3005, 3663, 7181, 7294, 9068, 9849, 10349
ApaI GGGCCC 1 cut(s) 7298
ApaLI GTGCAC 2 cut(s) 5651, 8049
AspA2I CCTAGG 1 cut(s) 8512
AspLEI GCGC 7 cut(s) 1682, 3202, 6079, 9314, 9616, 9618, 9875
AspS9I GGNCC 9 cut(s) 1981, 2539, 3299, 3664, 5500, 5637, 7294, 7295, 8140
AsuC2I CCSGG 3 cut(s) 6336, 9821, 9822
AsuII TTCGAA 2 cut(s) 742, 4701
AsuNHI GCTAGC 1 cut(s) 964
AvaI CYCGRG 4 cut(s) 188, 2623, 5111, 9820
AvaII GGWCC 6 cut(s) 1981, 2539, 3299, 5500, 5637, 8140
AvrII CCTAGG 1 cut(s) 8512
BaeGI GKGCMC 5 cut(s) 5655, 6705, 7298, 7914, 8053
BaeI ACNNNNGTAYC 2 cut(s) 5193, 5226
BalI TGGCCA 2 cut(s) 1578, 7183
BamHI GGATCC 2 cut(s) 4413, 9702
BanI GGYRCC 3 cut(s) 753, 6700, 7204
BanII GRGCYC 3 cut(s) 189, 7298, 10785
BarI GAAGNNNNNNTAC 8 cut(s) 256, 288, 7821, 7830, 7853, 7862, 10212, 10244
BauI CACGAG 1 cut(s) 3323
BbrPI CACGTG 1 cut(s) 9611
Bbv12I GWGCWC 6 cut(s) 189, 4294, 5655, 6357, 8053, 9761
BceAI ACGGC 8 cut(s) 1667, 3169, 4018, 4507, 9055, 9275, 9352, 10821
BcgI CGANNNNNNTGC 4 cut(s) 821, 855, 1895, 1929
BciVI GTATCC 3 cut(s) 1802, 8955, 10161
BcnI CCSGG 3 cut(s) 6336, 9821, 9822
BcuI ACTAGT 7 cut(s) 4229, 5435, 7373, 7402, 7538, 7567, 7834
BfmI CTRYAG 5 cut(s) 2170, 2922, 4488, 6998, 8539
BfoI RGCGCY 2 cut(s) 1683, 6080
BfrI CTTAAG 5 cut(s) 1364, 1658, 1699, 6536, 8956
BfuAI ACCTGC 2 cut(s) 5485, 9047
BfuI GTATCC 3 cut(s) 1802, 8955, 10161
BglI GCCNNNNNGGC 1 cut(s) 3473
BglII AGATCT 4 cut(s) 202, 1283, 2180, 8161
BlnI CCTAGG 1 cut(s) 8512
BmcAI AGTACT 4 cut(s) 5590, 7441, 7839, 9181
Bme18I GGWCC 6 cut(s) 1981, 2539, 3299, 5500, 5637, 8140
BmeRI GACNNNNNGTC 2 cut(s) 3371, 4304
BmeT110I CYCGRG 4 cut(s) 188, 2623, 5111, 9820
BmgBI CACGTC 5 cut(s) 2852, 3989, 5840, 8234, 9001
BmgT120I GGNCC 9 cut(s) 1981, 2539, 3299, 3664, 5500, 5637, 7294, 7295, 8140
BmtI GCTAGC 1 cut(s) 968
BplI GAGNNNNNCTC 2 cut(s) 2088, 2120
Bpu10I CCTNAGC 2 cut(s) 3246, 9624
Bpu14I TTCGAA 2 cut(s) 742, 4701
BpuEI CTTGAG 9 cut(s) 2060, 2197, 3977, 4754, 4798, 6482, 8313, 8456, 8530
BpuMI CCSGG 3 cut(s) 6336, 9821, 9822
BsaAI YACGTR 7 cut(s) 1388, 5034, 6130, 8076, 9611, 9957, 10143
BsaBI GATNNNNATC 3 cut(s) 6627, 8523, 10440
BsaHI GRCGYC 7 cut(s) 1952, 4992, 8315, 8385, 8499, 8706, 10344
BsaI GGTCTC 1 cut(s) 494
Bse118I RCCGGY 1 cut(s) 346
Bse3DI GCAATG 2 cut(s) 1416, 2441
Bse8I GATNNNNATC 3 cut(s) 6627, 8523, 10440
BseJI GATNNNNATC 3 cut(s) 6627, 8523, 10440
BseMI GCAATG 2 cut(s) 1416, 2441
BsePI GCGCGC 1 cut(s) 9614
BseSI GKGCMC 5 cut(s) 5655, 6705, 7298, 7914, 8053
BseX3I CGGCCG 1 cut(s) 9068
BseYI CCCAGC 2 cut(s) 5824, 10480
BsgI GTGCAG 3 cut(s) 1889, 6268, 8179
Bsh1236I CGCG 3 cut(s) 3914, 8047, 9616
Bsh1285I CGRYCG 3 cut(s) 3100, 3557, 9071
BshFI GGCC 9 cut(s) 1479, 1578, 3007, 3665, 7183, 7296, 9070, 9851, 10351
BshNI GGYRCC 3 cut(s) 753, 6700, 7204
BsiEI CGRYCG 3 cut(s) 3100, 3557, 9071
BsiHKAI GWGCWC 6 cut(s) 189, 4294, 5655, 6357, 8053, 9761
BsiHKCI CYCGRG 4 cut(s) 188, 2623, 5111, 9820
BslFI GGGAC 9 cut(s) 1687, 2296, 2577, 3186, 3300, 5094, 6282, 8680, 10206
BsmBI CGTCTC 1 cut(s) 8490
BsmFI GGGAC 9 cut(s) 1687, 2296, 2577, 3186, 3300, 5094, 6282, 8680, 10206
BsmI GAATGC 4 cut(s) 320, 587, 5963, 6174
BsnI GGCC 9 cut(s) 1479, 1578, 3007, 3665, 7183, 7296, 9070, 9851, 10351
Bso31I GGTCTC 1 cut(s) 494
BsoBI CYCGRG 4 cut(s) 188, 2623, 5111, 9820
Bsp119I TTCGAA 2 cut(s) 742, 4701
Bsp120I GGGCCC 1 cut(s) 7294
Bsp1407I TGTACA 2 cut(s) 2063, 7860
Bsp19I CCATGG 5 cut(s) 9, 1804, 2595, 7799, 10431
BspANI GGCC 9 cut(s) 1479, 1578, 3007, 3665, 7183, 7296, 9070, 9851, 10351
BspFNI CGCG 3 cut(s) 3914, 8047, 9616
BspHI TCATGA 4 cut(s) 3304, 3343, 8817, 10642
BspMAI CTGCAG 3 cut(s) 2174, 4492, 8543
BspMI ACCTGC 2 cut(s) 5485, 9047
BspOI GCTAGC 1 cut(s) 968
BspQI GCTCTTC 4 cut(s) 177, 1118, 6045, 10728
BspT104I TTCGAA 2 cut(s) 742, 4701
BspT107I GGYRCC 3 cut(s) 753, 6700, 7204
BspTI CTTAAG 5 cut(s) 1364, 1658, 1699, 6536, 8956
BspTNI GGTCTC 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 8327
BsrDI GCAATG 2 cut(s) 1416, 2441
BsrFI RCCGGY 1 cut(s) 346
BsrGI TGTACA 2 cut(s) 2063, 7860
BssAI RCCGGY 1 cut(s) 346
BssHII GCGCGC 1 cut(s) 9614
BssNAI GTATAC 6 cut(s) 2846, 4227, 4426, 6241, 8152, 9960
BssNI GRCGYC 7 cut(s) 1952, 4992, 8315, 8385, 8499, 8706, 10344
BssSI CACGAG 1 cut(s) 3323
Bst1107I GTATAC 6 cut(s) 2846, 4227, 4426, 6241, 8152, 9960
Bst2BI CACGAG 1 cut(s) 3323
BstACI GRCGYC 7 cut(s) 1952, 4992, 8315, 8385, 8499, 8706, 10344
BstAFI CTTAAG 5 cut(s) 1364, 1658, 1699, 6536, 8956
BstAPI GCANNNNNTGC 5 cut(s) 1561, 2687, 6291, 7970, 10531
BstAUI TGTACA 2 cut(s) 2063, 7860
BstBAI YACGTR 7 cut(s) 1388, 5034, 6130, 8076, 9611, 9957, 10143
BstBI TTCGAA 2 cut(s) 742, 4701
BstDSI CCRYGG 8 cut(s) 9, 1804, 2595, 4034, 5885, 7799, 9368, 10431
BstFNI CGCG 3 cut(s) 3914, 8047, 9616
BstH2I RGCGCY 2 cut(s) 1683, 6080
BstHHI GCGC 7 cut(s) 1682, 3202, 6079, 9314, 9616, 9618, 9875
BstMCI CGRYCG 3 cut(s) 3100, 3557, 9071
BstSFI CTRYAG 5 cut(s) 2170, 2922, 4488, 6998, 8539
BstSLI GKGCMC 5 cut(s) 5655, 6705, 7298, 7914, 8053
BstSNI TACGTA 2 cut(s) 9957, 10143
BstUI CGCG 3 cut(s) 3914, 8047, 9616
BstX2I RGATCY 9 cut(s) 202, 1283, 2180, 2650, 3356, 4413, 5185, 8161, 9702
BstXI CCANNNNNNTGG 5 cut(s) 4897, 6006, 7820, 8067, 9847
BstYI RGATCY 9 cut(s) 202, 1283, 2180, 2650, 3356, 4413, 5185, 8161, 9702
BstZ17I GTATAC 6 cut(s) 2846, 4227, 4426, 6241, 8152, 9960
BstZI CGGCCG 1 cut(s) 9068
BsuI GTATCC 3 cut(s) 1802, 8955, 10161
BsuRI GGCC 9 cut(s) 1479, 1578, 3007, 3665, 7183, 7296, 9070, 9851, 10351
BtgI CCRYGG 8 cut(s) 9, 1804, 2595, 4034, 5885, 7799, 9368, 10431
BtgZI GCGATG 4 cut(s) 322, 990, 9267, 10036
BtrI CACGTC 5 cut(s) 2852, 3989, 5840, 8234, 9001
BtsI GCAGTG 3 cut(s) 7558, 8191, 8765
BveI ACCTGC 2 cut(s) 5485, 9047
CaiI CAGNNNCTG 1 cut(s) 2169
CciI TCATGA 4 cut(s) 3304, 3343, 8817, 10642
CfoI GCGC 7 cut(s) 1682, 3202, 6079, 9314, 9616, 9618, 9875
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 9 cut(s) 1981, 2539, 3299, 3664, 5500, 5637, 7294, 7295, 8140
Cfr9I CCCGGG 1 cut(s) 9820
CpoI CGGWCCG 1 cut(s) 5637
CseI GACGC 7 cut(s) 893, 1181, 1960, 8323, 8393, 8682, 10333
CspI CGGWCCG 1 cut(s) 5637
DraI TTTAAA 7 cut(s) 507, 1432, 2367, 4333, 5893, 6031, 6441
DrdI GACNNNNNNGTC 1 cut(s) 7386
DriI GACNNNNNGTC 2 cut(s) 3371, 4304
DseDI GACNNNNNNGTC 1 cut(s) 7386
EaeI YGGCCR 3 cut(s) 1576, 7181, 9068
EagI CGGCCG 1 cut(s) 9068
Eam1105I GACNNNNNGTC 2 cut(s) 3371, 4304
EciI GGCGGA 5 cut(s) 4473, 7477, 7639, 8199, 9765
Ecl136II GAGCTC 1 cut(s) 187
EclXI CGGCCG 1 cut(s) 9068
Eco105I TACGTA 2 cut(s) 9957, 10143
Eco24I GRGCYC 3 cut(s) 189, 7298, 10785
Eco31I GGTCTC 1 cut(s) 494
Eco32I GATATC 2 cut(s) 2985, 7138
Eco47I GGWCC 6 cut(s) 1981, 2539, 3299, 5500, 5637, 8140
Eco52I CGGCCG 1 cut(s) 9068
Eco53kI GAGCTC 1 cut(s) 187
Eco72I CACGTG 1 cut(s) 9611
Eco88I CYCGRG 4 cut(s) 188, 2623, 5111, 9820
EcoICRI GAGCTC 1 cut(s) 187
EcoO109I RGGNCCY 4 cut(s) 2539, 3299, 7294, 7295
EcoRI GAATTC 3 cut(s) 4359, 6456, 8825
EcoRV GATATC 2 cut(s) 2985, 7138
EcoT22I ATGCAT 4 cut(s) 876, 1557, 4055, 5963
EcoT38I GRGCYC 3 cut(s) 189, 7298, 10785
Esp3I CGTCTC 1 cut(s) 8490
FaqI GGGAC 9 cut(s) 1687, 2296, 2577, 3186, 3300, 5094, 6282, 8680, 10206
FauI CCCGC 3 cut(s) 116, 689, 6225
FauNDI CATATG 3 cut(s) 3292, 3543, 9846
FblI GTMKAC 9 cut(s) 2845, 4226, 4425, 4494, 6240, 7955, 8151, 9959, 10597
FriOI GRGCYC 3 cut(s) 189, 7298, 10785
GlaI GCGC 7 cut(s) 1681, 3201, 6078, 9313, 9615, 9617, 9874
GsaI CCCAGC 2 cut(s) 5828, 10484
HaeII RGCGCY 2 cut(s) 1683, 6080
HaeIII GGCC 9 cut(s) 1479, 1578, 3007, 3665, 7183, 7296, 9070, 9851, 10351
HgaI GACGC 7 cut(s) 893, 1181, 1960, 8323, 8393, 8682, 10333
HhaI GCGC 7 cut(s) 1682, 3202, 6079, 9314, 9616, 9618, 9875
Hin1I GRCGYC 7 cut(s) 1952, 4992, 8315, 8385, 8499, 8706, 10344
Hin6I GCGC 7 cut(s) 1680, 3200, 6077, 9312, 9614, 9616, 9873
HinP1I GCGC 7 cut(s) 1680, 3200, 6077, 9312, 9614, 9616, 9873
HincII GTYRAC 4 cut(s) 474, 4717, 5313, 10451
HindII GTYRAC 4 cut(s) 474, 4717, 5313, 10451
HindIII AAGCTT 7 cut(s) 1125, 1267, 1831, 2780, 6539, 10458, 10678
HpaI GTTAAC 1 cut(s) 5313
Hpy99I CGWCG 7 cut(s) 1688, 2853, 3155, 3993, 5844, 8025, 10449
Hsp92I GRCGYC 7 cut(s) 1952, 4992, 8315, 8385, 8499, 8706, 10344
HspAI GCGC 7 cut(s) 1680, 3200, 6077, 9312, 9614, 9616, 9873
KspAI GTTAAC 1 cut(s) 5313
LguI GCTCTTC 4 cut(s) 177, 1118, 6045, 10728
MbiI CCGCTC 1 cut(s) 8327
MfeI CAATTG 8 cut(s) 225, 594, 994, 1530, 1727, 3929, 5780, 10183
MflI RGATCY 9 cut(s) 202, 1283, 2180, 2650, 3356, 4413, 5185, 8161, 9702
MlsI TGGCCA 2 cut(s) 1578, 7183
MluNI TGGCCA 2 cut(s) 1578, 7183
Mox20I TGGCCA 2 cut(s) 1578, 7183
Mph1103I ATGCAT 4 cut(s) 876, 1557, 4055, 5963
MscI TGGCCA 2 cut(s) 1578, 7183
MslI CAYNNNNRTG 9 cut(s) 2587, 3348, 6147, 6362, 7194, 7724, 9117, 9845, 10647
Msp20I TGGCCA 2 cut(s) 1578, 7183
MspA1I CMGCKG 2 cut(s) 5458, 7561
MspCI CTTAAG 5 cut(s) 1364, 1658, 1699, 6536, 8956
MssI GTTTAAAC 1 cut(s) 5893
MunI CAATTG 8 cut(s) 225, 594, 994, 1530, 1727, 3929, 5780, 10183
Mva1269I GAATGC 4 cut(s) 320, 587, 5963, 6174
MvnI CGCG 3 cut(s) 3914, 8047, 9616
NciI CCSGG 3 cut(s) 6336, 9821, 9822
NcoI CCATGG 5 cut(s) 9, 1804, 2595, 7799, 10431
NdeI CATATG 3 cut(s) 3292, 3543, 9846
NheI GCTAGC 1 cut(s) 964
NmeAIII GCCGAG 1 cut(s) 3221
NmuCI GTSAC 9 cut(s) 905, 937, 3499, 3707, 5171, 6959, 8381, 9932, 10175
NsiI ATGCAT 4 cut(s) 876, 1557, 4055, 5963
NspV TTCGAA 2 cut(s) 742, 4701
PaeI GCATGC 2 cut(s) 1425, 7995
PaeR7I CTCGAG 1 cut(s) 188
PagI TCATGA 4 cut(s) 3304, 3343, 8817, 10642
PauI GCGCGC 1 cut(s) 9614
PciI ACATGT 6 cut(s) 145, 3643, 5470, 5677, 7411, 7576
PciSI GCTCTTC 4 cut(s) 177, 1118, 6045, 10728
PcsI WCGNNNNNNNCGW 2 cut(s) 3421, 9874
PctI GAATGC 4 cut(s) 320, 587, 5963, 6174
PflMI CCANNNNNTGG 5 cut(s) 850, 5050, 5245, 7033, 7190
PmaCI CACGTG 1 cut(s) 9611
PmeI GTTTAAAC 1 cut(s) 5893
PmlI CACGTG 1 cut(s) 9611
Ppu21I YACGTR 7 cut(s) 1388, 5034, 6130, 8076, 9611, 9957, 10143
PpuMI RGGWCCY 2 cut(s) 2539, 3299
PscI ACATGT 6 cut(s) 145, 3643, 5470, 5677, 7411, 7576
PsiI TTATAA 5 cut(s) 866, 1025, 3042, 3437, 10251
Psp124BI GAGCTC 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 6553
Psp5II RGGWCCY 2 cut(s) 2539, 3299
PspCI CACGTG 1 cut(s) 9611
PspFI CCCAGC 2 cut(s) 5824, 10480
PspOMI GGGCCC 1 cut(s) 7294
PspPI GGNCC 9 cut(s) 1981, 2539, 3299, 3664, 5500, 5637, 7294, 7295, 8140
PspPPI RGGWCCY 2 cut(s) 2539, 3299
PstI CTGCAG 3 cut(s) 2174, 4492, 8543
PstNI CAGNNNCTG 1 cut(s) 2169
PsuI RGATCY 9 cut(s) 202, 1283, 2180, 2650, 3356, 4413, 5185, 8161, 9702
PteI GCGCGC 1 cut(s) 9614
PvuII CAGCTG 2 cut(s) 5458, 7561
RseI CAYNNNNRTG 9 cut(s) 2587, 3348, 6147, 6362, 7194, 7724, 9117, 9845, 10647
Rsr2I CGGWCCG 1 cut(s) 5637
RsrII CGGWCCG 1 cut(s) 5637
SacI GAGCTC 1 cut(s) 189
SapI GCTCTTC 4 cut(s) 177, 1118, 6045, 10728
Sau96I GGNCC 9 cut(s) 1981, 2539, 3299, 3664, 5500, 5637, 7294, 7295, 8140
ScaI AGTACT 4 cut(s) 5590, 7441, 7839, 9181
SfcI CTRYAG 5 cut(s) 2170, 2922, 4488, 6998, 8539
Sfr274I CTCGAG 1 cut(s) 188
SfuI TTCGAA 2 cut(s) 742, 4701
SinI GGWCC 6 cut(s) 1981, 2539, 3299, 5500, 5637, 8140
SlaI CTCGAG 1 cut(s) 188
SmaI CCCGGG 1 cut(s) 9822
SmiMI CAYNNNNRTG 9 cut(s) 2587, 3348, 6147, 6362, 7194, 7724, 9117, 9845, 10647
SnaBI TACGTA 2 cut(s) 9957, 10143
SpeI ACTAGT 7 cut(s) 4229, 5435, 7373, 7402, 7538, 7567, 7834
SphI GCATGC 2 cut(s) 1425, 7995
SspI AATATT 2 cut(s) 5298, 5610
SstI GAGCTC 1 cut(s) 189
TaqII GACCGA 3 cut(s) 3086, 3543, 5625
TauI GCSGC 5 cut(s) 890, 1479, 2581, 3007, 4268
TseFI GTSAC 9 cut(s) 905, 937, 3499, 3707, 5171, 6959, 8381, 9932, 10175
Tsp45I GTSAC 9 cut(s) 905, 937, 3499, 3707, 5171, 6959, 8381, 9932, 10175
TspGWI ACGGA 8 cut(s) 2878, 3518, 4406, 7046, 7940, 9248, 9695, 10012
TspMI CCCGGG 1 cut(s) 9820
Van91I CCANNNNNTGG 5 cut(s) 850, 5050, 5245, 7033, 7190
Vha464I CTTAAG 5 cut(s) 1364, 1658, 1699, 6536, 8956
VneI GTGCAC 2 cut(s) 5651, 8049
VpaK11BI GGWCC 6 cut(s) 1981, 2539, 3299, 5500, 5637, 8140
XbaI TCTAGA 3 cut(s) 1796, 3139, 4117
XcmI CCANNNNNNNNNTGG 3 cut(s) 5455, 7393, 9326
XhoI CTCGAG 1 cut(s) 188
XmaI CCCGGG 1 cut(s) 9820
XmaJI CCTAGG 1 cut(s) 8512
XmiI GTMKAC 9 cut(s) 2845, 4226, 4425, 4494, 6240, 7955, 8151, 9959, 10597
ZraI GACGTC 3 cut(s) 4993, 8500, 8707
ZrmI AGTACT 4 cut(s) 5590, 7441, 7839, 9181
Zsp2I ATGCAT 4 cut(s) 876, 1557, 4055, 5963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.