Rh1CG154200

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016427
Physical Location & Seq
Forward (+)
34063616 .. 34084586
20971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG154200.1

Sequence Viewer

Length: 7485 bp
ATGACGACTACGTCAGCCACGAACTATTCCCCCACCCAAGAGACCCAGTTCGCAAAATGGCAGGCGATCCAAGGCAACTCGGAAGACCACGACGGTTCTTGCGCCGACGACGGTGACTATGAGGGAGGATACGGAGGAGAGGAATACAAGGACAGCATAGAGAAGGTCGATATTTGGAGGAAAGCGTTGACTGAAATAGGTGGTCTCTCCGGATGGGATTTAAAAGACAGGTTGGAAACCTCTGTTATTGAAGAGATAGTAAAATGTGTCGAGACAAAATGGAAGCTCAAATTTAATCCTGCATTCTCAATTGAGGATTCCAAGGATTTTGTTGGGATGGATCGTGTGAGGAAAATCGAATTGGATTTGGATATAGAGACATTGGATAAAATCGGTGTCATTGGAATTTGCGGGATGCCAGGAGTCGGTAAGACGACGATTGCAGAAGTTGTGTTTCGAAGAAATTGGCACCATTTTGAAGCCAACAGTTTCCTAGCTAATGTTGGAGAGATAAGTAAGACGAAAGGATTATTGCATATACAGAAGCAACTTTATCGCGACTTGTTGGATGGCAAAGTTATAACTATGAATGATGTCCCTGTGGAAAGGAGAAAATTGCGTCACAAAAAGGTGCTTATCATTCTTGATGGTGTGACCGAGTTACAATCTGTTTTTGAGCTAGCAGGAACAGATGTTAAAGAATTAATCAATTGGTTTGGTCGAGGCAGTAGAATCATTATAACCACAATAAATGAAAAGTTGTTGAAGGATTATGGGGCAAAAACACACAAGGTTGAGACACTTTCTGAAAATGAGCCTCGTGTGCTCTTCTTCCGGAAAGCCTTCAGCAAAGACCATCCTCTGCATGATTGTACTGAGTTGGAGTTCAAGTTCAAGATAGACCATACTATGCGTCAGTATGCTGAGTTGGCTTACAAATTTGTGGATTTAACTGATGGTCTTCCTTTGGCTATTGTAGTTTTGGGAAGCTTGTTATTGAACAGATCTTTGGATGAATGGGAAGCTGAACTTAGCACACTAGAAGCTAATAATGATTCTAATGATGAGAAAACTTTTGGGATTCTTAAGCTATGTATTGATGGATTGCGTGATGGAGGAAAGGAAATTTTCTTGGACATTGCATGCTTCTTTAAAGGAGATGACAAAAATCGTGTGGAAAGGATATTTGAAAGCTGCGGACTCAATCCACGCATTGAATTGAACATTCTCATCGAGAAATCTCTAGTGACAATTGTGGGAGGAAAATTGTGGATGCATGATTTACTACAAAAAGCTGGCCAGAAAATTGTTATTCGAAAATCCGAATTACCAGAGAATCGCAGCAGATTGTGGGATCATGAAGAAGCCGTTTCGGTACTTAAACAGAATAAGGGAACAAGCGCTGTCAAAGGTATTTTCTTAAGCTCACCTCAACTCTGCAAAGTGCGATTGAAGGCCGACTCATTTTCAAAAATGGACTTTCTTAGATTGTTGAAAATAAAGAATGTGAAATTTTCTGGATGCCATGAATACGATCTTTCAAATAAATTAAGCTTCTTGGAATGGCATGACTTTCCTTCAACATTTCTGCCATCTGAGTTTGAACCGAAGAATCTTGTTGAGCTGCACTTGCCTCGAAGCCAAGTAAAGCAATTATGGGAGGATAATATAACGCCTCCTTTGGAAAAGTTGGTTGTAATGGACCTTAGTGATTGCAAAGAGTTGACCACTACCCCAGACTTCCAGTCAGTGCCAAATCTTGAGAGCCTAGTCCTCAAAGGATTTTGTTTCATAAATTCCCAAAGTAGTGAAGAACGTAAACTTCAGAGGATTCCGATATCAGAACAACGTCTTCTGCGGCCTCATTTGCAAAAGTTCTATGAGGATATAATTTATAAAGGTTGTGGTTTTGAATATATTACTCCTCACACTGAAATTCCGTCATGGTTCGGTCGCCGGGGTACAGGGTCGTCTATAACACTCCAGCTACCTCTAGATTATTTCGATGGCAAACGTGAGTTGATGGGACTTGCTCTATGTTTTGTTTATGAAGCGCAGGAGCATGAGAATATGGAATCAACAGCTTCTTACATCTCGGCTCAGGAAGTAAAATATAGTTGCAATTACAGTTGTCGTTTGTCCACATATGGAGGTCCTCATGATGACTGTCAGCTCCTCGTGTGTAAACTCATGGATCATGATTATGTTGGATCTTTTCGACATTGGGTCTATATAGCAGGAGGGCTGTTTGCAGAAAGGTTGATCAAACGCTCTGTTCGAGCTGAAGTTAAAATCAACAGACCAGGGGTGAAAGTGAAAGCCTGTGGGGCAAGTCTAATATACTCTGGAGGTGTGACAGAATTTGTTTGGAATTTGAATCTCCGTGATGAAATTCATATGAGAAATCTGTCGAGTGGGGATCAAAAGGAAAATTCTGACGATCAGTTTAATAAACAAGAACAAGAAACTATTGGTGATCATCAGCTGGAACTAAAACATGTACCTGTCCAATATCAGGCCCAAATCAACCACATGATCTCATTGTATGATACCAAGCGATCCCTTGATCATGATGCCAGATCATCTAGTAGAACCAGCAGCAGCACTGAAGAACCTCATCAAAGATTAGAAATACCAAAATCCAATGATCAGTCCAACAAACAAGATCAAGAGACTAATTATGGTTGTGCTACAGACAAAAAATTCTTGATTGAAATTGAACCACACAATTCAAGAGATAGTTCAACTTCAACCACGATCTTTGATGATCAATTGAGAACAAATGTAGAGTCATTCCTTGAGGAACTATTTGAGCTAGGAGGCAAAGCACGTGGCAAGGATTTAGGTTTCATTTTCCCTCTCCGAGCAATTTTGCCGTGGTTTAATCATCAATGCATTGGGAACGTATTCATTCCAGAAAAAGAAAGAATTGGGAGTTCAGTAAGCCTACCTCTTCCTCGAGAATTGTATAACAATAAGGAATGGGTAGGATTTGCTGTATATGTGGCCTTCACTCTGCCTCCAGGTGTTTCACTTGAAGAATCATGTTTCTTCAAGTCTGTATTGTATACTAGTGATGGACATTTTCATTGCCTAAAATTATCGGCTGCTTGTGAAGACAATTTTAGGGGAGCACATCGACTCCTTGTCATCCACATACCGCGAGGGCGTTTTAGTAAACAGTTGAATCAGTGCAGGGGAATTAGTGCTGCTTTTGTGTCCTCAACTCCAAGTGTGGAGGCTGAGATGTGTGGGATCCGTGTAGTATACGAGCAAGATTTGAAAGGGTTAATCCAAACAATTACCCAATGCACCATAAGAAATCCGCCTGCAGTCTACTATGGACTCGCCCATTCATTTGTGCCGTATGGAAGAGAGTCTTTCATGTTAGCTATTATGGAGGATAATTTGATTGAAGCAGCTAAATCCAGCAAAAGGAAGCTTTCAACCTTGCAAGAGTCTTTAACAGATTCAAAATTCCTCAGTGGTCCACAAATTCATTTACAGATACAGGCTGGAACTCCATACATGCCACTCAAGTTCAAAGATTCCATAGTTGACTGGAAAAAACACCTTGAGCTTTTGCTTGAATGTTTCTTTACCCTTTCTGATCTATCTATTAATCTTACTCTTAACAGAAGCAGAATCTCTTTCTCAAGGGATTTTGATCCTTACTCTGGTATTTTCCTTCAAAGAGAAATTCCAGAGTGGTTCACACCCCAATATCCCTCCGAGAGTATGGTGTTGGAACTTCCTCCAAATTTGGAAAATGATGTGAATTTCATGGGACTTGTTGTATGTGCTGCCTTTTCAGTCCATGCCTCTGAAGCTGACGTCCTCAAATATCTTGTATCAGGACTCCATCCCCAACTTACATGCCATTTCCAAAATTTGAGTTCTGAATCTTCTGATCAATCTTATGGTCTTACAGCTCCCATGATTGATACCAGTCCCAAGAACAAATTCATGTGGTTATATCGCAGAGGATTCATTTGGCAGGAATACCTACCCCGTGACTTATTTAAGGATCTGCTGCATAAAGATACTTCAGTCAAGGTTTCATTTAGGAGTGATTCATCCCAAGTCTTGGAGGTACAGAAATGCAGCTTCCGCATCTTATACAAGCAAGATGTGGAAAAATTGAAGCAAATATTAATACAGTGCTTTACCTCCTTCTTTGACAATGACGATGTCAGTCGAGCATATTTAGTACAGGATTCTGGAGATTACATGCAATCCATTGACGATGATGCAGGATCATCTAGTAGAACTGGCAGCAGTACTGAAGAACCTCTTCAAAGATTAGAAAGACCAGAATCCAACGATCAGTCCGATGAGCAAGTGCATGAAACTAATTCTGACCTTACACATGTAGCAGAATGTGGCTATGCTTCAGACACTAGATTCTTAATTGAAATTGAACCACACACTTCAAGAGATAATTCAAGTTCAACCAAGATTGTTGGTGATCAATTGAGAACAAATGTAGAGTCATTCCTTGAAGAACTGTTTGAGCTAGGAGGCAAAGCACATCGCCATGATTTAGGTTTCATTTTCTCTCTTCAAGCAATTTTACCGTGGTTTAAACATCAAGGCATTGGGAACGTGATAGGTGTACCTCTTCCTTTAGAATTGTATAACAACAAGGAATGCATAGGATTTGCTCTATATGTGATCCTCACTCTGCCCCCAGGTGCTTGGCTTAAAGAAGGTTCTTGTTTTAAAATTGTGTTGTTTACTGAAGGGCCAAGGTATTGCCTAAACTTAGCGCCCACTGGTGAAGAAAATTTCATGGGTTCACATCGGCTCCTGGTTATTCACATACCACAAAGACATTTTGGAGAACAGTTGAACCACTGGAGTACCATTCGTGCTTCTTTTGAATCCCTTATGCCAGGTGTGGAGGTTGAGATGTGTGGTATGCGGGTAGTATACCAGGAAGATTTGAAAGGGTTAATCCAAACCATTACCAACTGCACAATATGCAGTCCCTCTGCTTACTATGGACTTGCCCAACCATTTGTGCCGGGAAGGTGGTCTGAAGTGCTCACACACATGAGGAATAGTTTGGTTGAAGCAGCTAAATCCAGCAAGAGGAAGCTTTCAACCTTGCAAGAGCCTTTAACAGATTTAAAATCCATCCAAGGAATTCAGTTACTGATACTTGCTGCAACTCCATTTACTTCACTGAAGAAAACAGAAACAGTAATCAAGTGGAAAAGAAACCTTAAGCTTTTGCTTCAACGTTTCTTAACCCTTTCTGGTCTATCAATAAGTCTCATTCTTAGAGGAGGCAGAATTTCTTTCTCAGAGGATCATAATCTTCATACTGGTATTTTCTTTCAAAAGGAAATTCCAGACTGGTTTACACCACATCACTCTGCCAGTATGGTGCCCGAACTTCCTCCAGATTTGGAAAATGATATGAATTTGATGGGTTTTGTTGTATGTGCTGCCTTTTCAGTCCAGGCCTCTAAAGCTGATGTCCTCAAATATCTGGATTCGGGACACCATCCCGAACTTATGTGCCATTTCCAATCAAGTTCTGACTATTCTGGTGTAGTAGTTCGTAACATGGTTGGCATCAGTCCGAAGAACAAATTCATGTGGTTTTATCGTAGAGGATTCATTTGGCTGCATTACGTGCCCCGTCACAATGTTGAGCATCTCTTCAATAAACTATCTGAACTAGAGGTTTCATTTGAGAGTGATTCTTCCCAAGTATTGGCAGTACAGAAATGTAGCTTCCGTTTCTTATACAAGCAAGATGTAGAAGGATTTAAGCAAACAATAATAGAGTGCTTTACCTCCTTCTTTGACAACGAGGATATCATTAAGCCATATATAGAAGAAGAGGACTCTGGACATAATAAGTGGCCAAATCATGGAGATGAGATGGGACCATCTAGTACAACTGGTGGCAACATTGTCATTGAGCAAACTCACAATGAGAGATTAGATGTACCCATAACTGATGGGAAGGGGAAAGGCCCTTCTGATGTCTCCTCAGTTGAAGCAGATGAGAGAGATTATTATGGAACTACACCTGTTTGTCAGGGTGAAACCAGTGGACAAGCAGCCAGTCATCAACTGGAACTAGTTACACATGTAGTAGAAGAAGAACATGGTTCTAGTACTTCTCCTCAACAGCTAATCCCATTCTTATCTGAAATTGAACCTCCCGCCTCAACAGGTTCAACTTCAACAAGATTTGAAGGTGATCAGTTCAGAACTAGCGGAAAATGCAGTGATCAGCTGGAACTAGTTACACATGTAGTAGAAGAAGAACACGGTTCTAGTTGTCCTCCGGAGCTAATCCCATTCTTATTTGAAATTGAACCTTCCGTCTCAACAGATTCAAGTCCAACCAAATTTGAAGGTGATCAGTTCAGAACAAATGTGGAGACTTTGCTCGCAGTAATGTTTCGAGATAAGATCAAAGGATATGACTTTGAACATGGTTTTATTTTATCTCCGAGAGTTGGAGCAATTTTGCCATGGTTTAATCACCAAACCATTGGGAGCGAAGCACTAGTACTTCATCTTCCTCCGGATTTATACAACGATAAGAAATGGGCAGGGTTTCCTCTATCTATAACCCTCACTCTTGGAGGAGACGTCATCTCTAGCCTAGGTGATTCTGATCCTTACTGTCTCTGCAGCTCAAGTATTATCCCTCAAAAGGACATTCCGAAGTGGTTCTGCGGGGTGAAATATCACGCAAATAAGTTGAAGACCACAGTCCCTCCGAATTTGGAAAATGATGAGAACTGGTTGGGATTTGTTGTCTGTGCTGCGTTTTCAGTCCATGAGTCCCAAGATGACGTCCTCAGTTATCTGGATTCAGAAAACTATCCGAAACTTACATGCCTTTTGCAGTGGGGTTCTGAAAGAGCTTTAAATCTCAAAGCTGGCAAGAAGTCGAGCATTGTTCTCAAGAATGAATTCATGTGGTTATATCTTAGACGATTCATGTGGCTGCGATACATACCCCATCAGAAATTTAAGGATCGGTTACATATATCTGATCACCTAGAGGCTTCATTTAGGACTGATTCAATTTCTTCCAAAGTCTTGAGGATACAGGAATGCAGCCTGCGTGTTCTATACAAGAAAGACGTGGAAGAATTTAAGCAAACAATAATAGAGTGCTTTACCTGCTTCTTTGACAACGAGGATGTCATTCGGCCGTATATAGAAGAGGATTCCAGACATAACAAGTGGCCAAGTCATGCAGATGACAGAGATTCTTATGGCACTACACCTGTTTGTCAGGGTGAACGAGGTTCTGCATCCAGTACTTCTCCGGAGCTAATGCCATTTTTCATTGAAACTGAACCTCCAGCTTCAACGGATTCAAGTTCAACCAAAGTTACACGGCAACTGAGAATGATAGAGTCATCGCTTGAACAACTATTTCAGGTACATCTGTTACTCTCTTTCTCATCTCTCTCATATACTATTACATCGAGTTCCATATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

2494

Amino Acids

283.52

Weight (kDa)

5.58

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 129 - 285 1.8e-12 NB-ARC domain
NACHT PF05729 135 - 284 1e-05 NACHT domain
WHD_ROQ1 PF23282 374 - 439 3e-17 Disease resistance protein Roq1-like, winged-helix domain
C-JID PF20160 642 - 781 2.2e-08 C-JID domain
C-JID PF20160 1231 - 1379 4.2e-08 C-JID domain
C-JID PF20160 1782 - 1925 4.4e-07 C-JID domain
C-JID PF20160 2226 - 2375 7.4e-06 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 581, 740, 1896
AasI GACNNNNNNGTC 1 cut(s) 10
AatII GACGTC 3 cut(s) 3837, 6621, 6828
Acc36I ACCTGC 1 cut(s) 7166
AccB1I GGYRCC 2 cut(s) 468, 5392
AccB7I CCANNNNNTGG 3 cut(s) 4087, 5725, 5885
AccI GTMKAC 4 cut(s) 3068, 3267, 3336, 4932
AccII CGCG 2 cut(s) 558, 3163
AccIII TCCGGA 5 cut(s) 209, 834, 6307, 6550, 7306
AclI AACGTT 1 cut(s) 5245
AcoI YGGCCR 4 cut(s) 1297, 5876, 7187, 7223
AcvI CACGTG 1 cut(s) 2831
AcyI GRCGYC 3 cut(s) 3834, 6618, 6825
AfeI AGCGCT 1 cut(s) 1402
AflII CTTAAG 3 cut(s) 1085, 1420, 5228
AflIII ACRYGT 4 cut(s) 2497, 4369, 6106, 6271
AhdI GACNNNNNGTC 3 cut(s) 1744, 2225, 3146
AhlI ACTAGT 4 cut(s) 3071, 6097, 6262, 6532
AjiI CACGTC 1 cut(s) 7120
AjnI CCWGG 8 cut(s) 418, 2302, 3022, 4690, 4809, 4894, 4935, 5466
AjuI GAANNNNNNNTTGG 6 cut(s) 344, 376, 992, 1024, 3947, 3979
AloI GAACNNNNNNTCC 2 cut(s) 875, 907
Alw21I GWGCWC 3 cut(s) 828, 3136, 5049
AlwNI CAGNNNCTG 1 cut(s) 5158
Ama87I CYCGRG 1 cut(s) 2958
Aor13HI TCCGGA 5 cut(s) 209, 834, 6307, 6550, 7306
Aor51HI AGCGCT 1 cut(s) 1402
ArsI GACNNNNNNTTYG 4 cut(s) 2774, 2806, 4475, 4507
AseI ATTAAT 3 cut(s) 704, 3621, 4154
Asp700I GAANNNNTTC 7 cut(s) 842, 2906, 3962, 4293, 5600, 6698, 6944
AspA2I CCTAGG 1 cut(s) 6631
AspLEI GCGC 4 cut(s) 104, 1403, 2056, 4771
AspS9I GGNCC 7 cut(s) 1702, 2153, 2518, 3488, 4745, 5900, 5990
AsuC2I CCSGG 2 cut(s) 1958, 5028
AsuII TTCGAA 2 cut(s) 457, 1315
AsuNHI GCTAGC 1 cut(s) 679
AvaI CYCGRG 1 cut(s) 2958
AvaII GGWCC 4 cut(s) 1702, 2153, 3488, 5900
AvrII CCTAGG 1 cut(s) 6631
BaeGI GKGCMC 2 cut(s) 5397, 5649
BaeI ACNNNNGTAYC 6 cut(s) 4035, 4068, 4846, 4879, 7415, 7448
BalI TGGCCA 3 cut(s) 1299, 5878, 7225
BamHI GGATCC 1 cut(s) 3255
BanI GGYRCC 2 cut(s) 468, 5392
BarI GAAGNNNNNNTAC 4 cut(s) 6519, 6528, 6551, 6560
BauI CACGAG 2 cut(s) 819, 2177
BbrPI CACGTG 1 cut(s) 2831
BbsI GAAGAC 5 cut(s) 90, 953, 1844, 3123, 6740
Bbv12I GWGCWC 3 cut(s) 828, 3136, 5049
BceAI ACGGC 5 cut(s) 1352, 2860, 3349, 7174, 7394
BcgI CGANNNNNNTGC 4 cut(s) 536, 570, 1616, 1650
BciT130I CCWGG 8 cut(s) 420, 2304, 3024, 4692, 4811, 4896, 4937, 5468
BciVI GTATCC 2 cut(s) 122, 7074
BcnI CCSGG 2 cut(s) 1958, 5028
BcuI ACTAGT 4 cut(s) 3071, 6097, 6262, 6532
BfmI CTRYAG 3 cut(s) 2691, 3330, 6658
BfoI RGCGCY 2 cut(s) 1404, 4772
BfrI CTTAAG 3 cut(s) 1085, 1420, 5228
BfuAI ACCTGC 1 cut(s) 7166
BfuI GTATCC 2 cut(s) 122, 7074
BglI GCCNNNNNGGC 1 cut(s) 2327
BglII AGATCT 1 cut(s) 1004
BlnI CCTAGG 1 cut(s) 6631
BmcAI AGTACT 4 cut(s) 4282, 6136, 6537, 7300
Bme18I GGWCC 4 cut(s) 1702, 2153, 3488, 5900
BmeRI GACNNNNNGTC 3 cut(s) 1744, 2225, 3146
BmeT110I CYCGRG 1 cut(s) 2958
BmgBI CACGTC 1 cut(s) 7120
BmgT120I GGNCC 7 cut(s) 1702, 2153, 2518, 3488, 4745, 5900, 5990
BmiI GGNNCC 5 cut(s) 470, 3257, 4808, 5394, 5901
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 9 cut(s) 405, 1263, 1511, 2563, 4122, 4240, 5592, 5674, 7301
BmtI GCTAGC 1 cut(s) 683
BmuI ACTGGG 1 cut(s) 40
BoxI GACNNNNGTC 1 cut(s) 6740
BpiI GAAGAC 5 cut(s) 90, 953, 1844, 3123, 6740
BpmI CTGGAG 7 cut(s) 1967, 2367, 3006, 4242, 4879, 5391, 7326
Bpu10I CCTNAGC 1 cut(s) 2100
Bpu14I TTCGAA 2 cut(s) 457, 1315
BpuEI CTTGAG 8 cut(s) 1781, 2819, 3521, 3596, 3640, 6649, 6920, 7096
BpuMI CCSGG 2 cut(s) 1958, 5028
BsaAI YACGTR 2 cut(s) 2831, 5644
BsaBI GATNNNNATC 3 cut(s) 3666, 5319, 6642
BsaHI GRCGYC 3 cut(s) 3834, 6618, 6825
BsaI GGTCTC 2 cut(s) 35, 209
BsaWI WCCGGW 5 cut(s) 209, 834, 6307, 6550, 7306
Bse3DI GCAATG 2 cut(s) 1137, 3088
Bse8I GATNNNNATC 3 cut(s) 3666, 5319, 6642
BseAI TCCGGA 5 cut(s) 209, 834, 6307, 6550, 7306
BseBI CCWGG 8 cut(s) 420, 2304, 3024, 4692, 4811, 4896, 4937, 5468
BseJI GATNNNNATC 3 cut(s) 3666, 5319, 6642
BseMI GCAATG 2 cut(s) 1137, 3088
BseRI GAGGAG 7 cut(s) 150, 1914, 2165, 5304, 5995, 6132, 6627
BseSI GKGCMC 2 cut(s) 5397, 5649
BseX3I CGGCCG 1 cut(s) 7187
BsgI GTGCAG 3 cut(s) 1610, 3214, 4960
Bsh1236I CGCG 2 cut(s) 558, 3163
Bsh1285I CGRYCG 2 cut(s) 1954, 7190
BshNI GGYRCC 2 cut(s) 468, 5392
BsiEI CGRYCG 2 cut(s) 1954, 7190
BsiHKAI GWGCWC 3 cut(s) 828, 3136, 5049
BsiHKCI CYCGRG 1 cut(s) 2958
BsiSI CCGG 7 cut(s) 210, 835, 1957, 5027, 6308, 6551, 7307
BslFI GGGAC 9 cut(s) 581, 2040, 3801, 3936, 4974, 5520, 5913, 6728, 6799
BsmBI CGTCTC 2 cut(s) 6352, 6609
BsmFI GGGAC 9 cut(s) 581, 2040, 3801, 3936, 4974, 5520, 5913, 6728, 6799
BsmI GAATGC 3 cut(s) 302, 4655, 7094
Bso31I GGTCTC 2 cut(s) 35, 209
BsoBI CYCGRG 1 cut(s) 2958
Bsp119I TTCGAA 2 cut(s) 457, 1315
Bsp1286I GDGCHC 5 cut(s) 828, 3136, 5049, 5397, 5649
Bsp13I TCCGGA 5 cut(s) 209, 834, 6307, 6550, 7306
Bsp19I CCATGG 1 cut(s) 6497
Bsp68I TCGCGA 1 cut(s) 558
BspEI TCCGGA 5 cut(s) 209, 834, 6307, 6550, 7306
BspFNI CGCG 2 cut(s) 558, 3163
BspHI TCATGA 4 cut(s) 1357, 2158, 2197, 2569
BspLI GGNNCC 5 cut(s) 470, 3257, 4808, 5394, 5901
BspMAI CTGCAG 2 cut(s) 3334, 6662
BspMI ACCTGC 1 cut(s) 7166
BspOI GCTAGC 1 cut(s) 683
BspQI GCTCTTC 1 cut(s) 833
BspT104I TTCGAA 2 cut(s) 457, 1315
BspT107I GGYRCC 2 cut(s) 468, 5392
BspTI CTTAAG 3 cut(s) 1085, 1420, 5228
BspTNI GGTCTC 2 cut(s) 35, 209
BsrDI GCAATG 2 cut(s) 1137, 3088
BssNAI GTATAC 3 cut(s) 3069, 3268, 4933
BssNI GRCGYC 3 cut(s) 3834, 6618, 6825
BssSI CACGAG 2 cut(s) 819, 2177
BssT1I CCWWGG 6 cut(s) 70, 321, 4748, 5143, 6497, 6631
Bst1107I GTATAC 3 cut(s) 3069, 3268, 4933
Bst2BI CACGAG 2 cut(s) 819, 2177
Bst2UI CCWGG 8 cut(s) 420, 2304, 3024, 4692, 4811, 4896, 4937, 5468
BstACI GRCGYC 3 cut(s) 3834, 6618, 6825
BstAFI CTTAAG 3 cut(s) 1085, 1420, 5228
BstAPI GCANNNNNTGC 2 cut(s) 4983, 5644
BstBAI YACGTR 2 cut(s) 2831, 5644
BstBI TTCGAA 2 cut(s) 457, 1315
BstC8I GCNNGC 8 cut(s) 63, 681, 1144, 1297, 3330, 6414, 6913, 7097
BstDSI CCRYGG 3 cut(s) 2876, 4577, 6497
BstFNI CGCG 2 cut(s) 558, 3163
BstH2I RGCGCY 2 cut(s) 1404, 4772
BstHHI GCGC 4 cut(s) 104, 1403, 2056, 4771
BstMCI CGRYCG 2 cut(s) 1954, 7190
BstNI CCWGG 8 cut(s) 420, 2304, 3024, 4692, 4811, 4896, 4937, 5468
BstNSI RCATGY 9 cut(s) 1146, 2501, 3532, 3879, 4234, 4373, 6110, 6275, 6870
BstPAI GACNNNNGTC 1 cut(s) 6740
BstSFI CTRYAG 3 cut(s) 2691, 3330, 6658
BstSLI GKGCMC 2 cut(s) 5397, 5649
BstUI CGCG 2 cut(s) 558, 3163
BstV2I GAAGAC 5 cut(s) 90, 953, 1844, 3123, 6740
BstX2I RGATCY 4 cut(s) 1004, 2210, 3255, 4027
BstXI CCANNNNNNTGG 2 cut(s) 4698, 6518
BstYI RGATCY 4 cut(s) 1004, 2210, 3255, 4027
BstZ17I GTATAC 3 cut(s) 3069, 3268, 4933
BstZI CGGCCG 1 cut(s) 7187
BsuI GTATCC 2 cut(s) 122, 7074
BtgI CCRYGG 3 cut(s) 2876, 4577, 6497
BtgZI GCGATG 2 cut(s) 4517, 7386
BtrI CACGTC 1 cut(s) 7120
BtsI GCAGTG 2 cut(s) 6253, 6884
BtuMI TCGCGA 1 cut(s) 558
BveI ACCTGC 1 cut(s) 7166
Cac8I GCNNGC 8 cut(s) 63, 681, 1144, 1297, 3330, 6414, 6913, 7097
CaiI CAGNNNCTG 1 cut(s) 5158
CciI TCATGA 4 cut(s) 1357, 2158, 2197, 2569
CfoI GCGC 4 cut(s) 104, 1403, 2056, 4771
Cfr13I GGNCC 7 cut(s) 1702, 2153, 2518, 3488, 4745, 5900, 5990
CseI GACGC 2 cut(s) 608, 902
CspCI CAANNNNNGTGG 4 cut(s) 2743, 2778, 2812, 2847
DraI TTTAAA 6 cut(s) 222, 1153, 4585, 4723, 5133, 6900
DrdI GACNNNNNNGTC 1 cut(s) 10
DriI GACNNNNNGTC 3 cut(s) 1744, 2225, 3146
DseDI GACNNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 4 cut(s) 1297, 5876, 7187, 7223
EagI CGGCCG 1 cut(s) 7187
Eam1105I GACNNNNNGTC 3 cut(s) 1744, 2225, 3146
EciI GGCGGA 1 cut(s) 3315
EclXI CGGCCG 1 cut(s) 7187
Eco130I CCWWGG 6 cut(s) 70, 321, 4748, 5143, 6497, 6631
Eco147I AGGCCT 1 cut(s) 5471
Eco31I GGTCTC 2 cut(s) 35, 209
Eco32I GATATC 2 cut(s) 1839, 5830
Eco47I GGWCC 4 cut(s) 1702, 2153, 3488, 5900
Eco47III AGCGCT 1 cut(s) 1402
Eco52I CGGCCG 1 cut(s) 7187
Eco72I CACGTG 1 cut(s) 2831
Eco88I CYCGRG 1 cut(s) 2958
EcoO109I RGGNCCY 2 cut(s) 2153, 5990
EcoRI GAATTC 2 cut(s) 5148, 6944
EcoRII CCWGG 8 cut(s) 418, 2302, 3022, 4690, 4809, 4894, 4935, 5466
EcoRV GATATC 2 cut(s) 1839, 5830
EcoT14I CCWWGG 6 cut(s) 70, 321, 4748, 5143, 6497, 6631
EcoT22I ATGCAT 3 cut(s) 1278, 2897, 4655
ErhI CCWWGG 6 cut(s) 70, 321, 4748, 5143, 6497, 6631
Esp3I CGTCTC 2 cut(s) 6352, 6609
FalI AAGNNNNNCTT 6 cut(s) 1014, 1046, 3364, 3396, 4278, 4310
FaqI GGGAC 9 cut(s) 581, 2040, 3801, 3936, 4974, 5520, 5913, 6728, 6799
FauI CCCGC 4 cut(s) 404, 4917, 6190, 6698
FauNDI CATATG 2 cut(s) 2146, 2397
FblI GTMKAC 4 cut(s) 3068, 3267, 3336, 4932
GlaI GCGC 4 cut(s) 103, 1402, 2055, 4770
GsuI CTGGAG 7 cut(s) 1967, 2367, 3006, 4242, 4879, 5391, 7326
HaeII RGCGCY 2 cut(s) 1404, 4772
HapII CCGG 7 cut(s) 210, 835, 1957, 5027, 6308, 6551, 7307
HgaI GACGC 2 cut(s) 608, 902
HhaI GCGC 4 cut(s) 104, 1403, 2056, 4771
Hin1I GRCGYC 3 cut(s) 3834, 6618, 6825
Hin6I GCGC 4 cut(s) 102, 1401, 2054, 4769
HinP1I GCGC 4 cut(s) 102, 1401, 2054, 4769
HincII GTYRAC 3 cut(s) 189, 1725, 3559
HindII GTYRAC 3 cut(s) 189, 1725, 3559
HindIII AAGCTT 5 cut(s) 988, 1552, 3440, 5099, 5231
HpaII CCGG 7 cut(s) 210, 835, 1957, 5027, 6308, 6551, 7307
Hpy99I CGWCG 4 cut(s) 95, 110, 113, 439
Hsp92I GRCGYC 3 cut(s) 3834, 6618, 6825
HspAI GCGC 4 cut(s) 102, 1401, 2054, 4769
Kpn2I TCCGGA 5 cut(s) 209, 834, 6307, 6550, 7306
LguI GCTCTTC 1 cut(s) 833
LmnI GCTCC 9 cut(s) 2059, 2178, 3131, 3937, 4812, 6310, 6485, 6522, 7309
LweI GCATC 9 cut(s) 405, 1263, 1511, 2563, 4122, 4240, 5592, 5674, 7301
MfeI CAATTG 5 cut(s) 309, 709, 1251, 2771, 4472
MflI RGATCY 4 cut(s) 1004, 2210, 3255, 4027
MhlI GDGCHC 5 cut(s) 828, 3136, 5049, 5397, 5649
MlsI TGGCCA 3 cut(s) 1299, 5878, 7225
MluNI TGGCCA 3 cut(s) 1299, 5878, 7225
Mox20I TGGCCA 3 cut(s) 1299, 5878, 7225
Mph1103I ATGCAT 3 cut(s) 1278, 2897, 4655
MroI TCCGGA 5 cut(s) 209, 834, 6307, 6550, 7306
MroXI GAANNNNTTC 7 cut(s) 842, 2906, 3962, 4293, 5600, 6698, 6944
MscI TGGCCA 3 cut(s) 1299, 5878, 7225
MslI CAYNNNNRTG 5 cut(s) 2202, 4536, 5054, 5889, 7236
Msp20I TGGCCA 3 cut(s) 1299, 5878, 7225
MspA1I CMGCKG 2 cut(s) 2485, 6256
MspCI CTTAAG 3 cut(s) 1085, 1420, 5228
MspI CCGG 7 cut(s) 210, 835, 1957, 5027, 6308, 6551, 7307
MssI GTTTAAAC 1 cut(s) 4585
MunI CAATTG 5 cut(s) 309, 709, 1251, 2771, 4472
Mva1269I GAATGC 3 cut(s) 302, 4655, 7094
MvaI CCWGG 8 cut(s) 420, 2304, 3024, 4692, 4811, 4896, 4937, 5468
MvnI CGCG 2 cut(s) 558, 3163
NciI CCSGG 2 cut(s) 1958, 5028
NcoI CCATGG 1 cut(s) 6497
NdeI CATATG 2 cut(s) 2146, 2397
NheI GCTAGC 1 cut(s) 679
NlaIV GGNNCC 5 cut(s) 470, 3257, 4808, 5394, 5901
NmeAIII GCCGAG 1 cut(s) 2075
NmuCI GTSAC 7 cut(s) 113, 620, 652, 1246, 2353, 4013, 5651
NruI TCGCGA 1 cut(s) 558
NsiI ATGCAT 3 cut(s) 1278, 2897, 4655
NspI RCATGY 9 cut(s) 1146, 2501, 3532, 3879, 4234, 4373, 6110, 6275, 6870
NspV TTCGAA 2 cut(s) 457, 1315
PaeI GCATGC 1 cut(s) 1146
PaeR7I CTCGAG 1 cut(s) 2958
PagI TCATGA 4 cut(s) 1357, 2158, 2197, 2569
PceI AGGCCT 1 cut(s) 5471
PciI ACATGT 4 cut(s) 2497, 4369, 6106, 6271
PciSI GCTCTTC 1 cut(s) 833
PcsI WCGNNNNNNNCGW 3 cut(s) 17, 2275, 4329
PctI GAATGC 3 cut(s) 302, 4655, 7094
PdmI GAANNNNTTC 7 cut(s) 842, 2906, 3962, 4293, 5600, 6698, 6944
PflFI GACNNNGTC 2 cut(s) 10, 4190
PflMI CCANNNNNTGG 3 cut(s) 4087, 5725, 5885
PmaCI CACGTG 1 cut(s) 2831
PmeI GTTTAAAC 1 cut(s) 4585
PmlI CACGTG 1 cut(s) 2831
Ppu21I YACGTR 2 cut(s) 2831, 5644
PpuMI RGGWCCY 1 cut(s) 2153
PscI ACATGT 4 cut(s) 2497, 4369, 6106, 6271
PshAI GACNNNNGTC 1 cut(s) 6740
PshBI ATTAAT 3 cut(s) 704, 3621, 4154
PsiI TTATAA 3 cut(s) 581, 740, 1896
Psp1406I AACGTT 1 cut(s) 5245
Psp5II RGGWCCY 1 cut(s) 2153
Psp6I CCWGG 8 cut(s) 418, 2302, 3022, 4690, 4809, 4894, 4935, 5466
PspCI CACGTG 1 cut(s) 2831
PspGI CCWGG 8 cut(s) 418, 2302, 3022, 4690, 4809, 4894, 4935, 5466
PspN4I GGNNCC 5 cut(s) 470, 3257, 4808, 5394, 5901
PspPI GGNCC 7 cut(s) 1702, 2153, 2518, 3488, 4745, 5900, 5990
PspPPI RGGWCCY 1 cut(s) 2153
PstI CTGCAG 2 cut(s) 3334, 6662
PstNI CAGNNNCTG 1 cut(s) 5158
PsuI RGATCY 4 cut(s) 1004, 2210, 3255, 4027
PsyI GACNNNGTC 2 cut(s) 10, 4190
PvuII CAGCTG 2 cut(s) 2485, 6256
RruI TCGCGA 1 cut(s) 558
RseI CAYNNNNRTG 5 cut(s) 2202, 4536, 5054, 5889, 7236
SapI GCTCTTC 1 cut(s) 833
Sau96I GGNCC 7 cut(s) 1702, 2153, 2518, 3488, 4745, 5900, 5990
ScaI AGTACT 4 cut(s) 4282, 6136, 6537, 7300
SduI GDGCHC 5 cut(s) 828, 3136, 5049, 5397, 5649
SfaNI GCATC 9 cut(s) 405, 1263, 1511, 2563, 4122, 4240, 5592, 5674, 7301
SfcI CTRYAG 3 cut(s) 2691, 3330, 6658
Sfr274I CTCGAG 1 cut(s) 2958
SfuI TTCGAA 2 cut(s) 457, 1315
SinI GGWCC 4 cut(s) 1702, 2153, 3488, 5900
SlaI CTCGAG 1 cut(s) 2958
SmiMI CAYNNNNRTG 5 cut(s) 2202, 4536, 5054, 5889, 7236
SpeI ACTAGT 4 cut(s) 3071, 6097, 6262, 6532
SphI GCATGC 1 cut(s) 1146
SseBI AGGCCT 1 cut(s) 5471
SspI AATATT 1 cut(s) 4152
StuI AGGCCT 1 cut(s) 5471
StyI CCWWGG 6 cut(s) 70, 321, 4748, 5143, 6497, 6631
TaqII GACCGA 2 cut(s) 671, 1940
TatI WGTACW 8 cut(s) 872, 4210, 4280, 5731, 5909, 6134, 6535, 7298
TauI GCSGC 1 cut(s) 1861
TseFI GTSAC 7 cut(s) 113, 620, 652, 1246, 2353, 4013, 5651
Tsp45I GTSAC 7 cut(s) 113, 620, 652, 1246, 2353, 4013, 5651
TspGWI ACGGA 7 cut(s) 147, 1929, 2372, 3248, 5738, 6334, 7367
Tth111I GACNNNGTC 2 cut(s) 10, 4190
Van91I CCANNNNNTGG 3 cut(s) 4087, 5725, 5885
Vha464I CTTAAG 3 cut(s) 1085, 1420, 5228
VpaK11BI GGWCC 4 cut(s) 1702, 2153, 3488, 5900
VspI ATTAAT 3 cut(s) 704, 3621, 4154
XbaI TCTAGA 1 cut(s) 1993
XceI RCATGY 9 cut(s) 1146, 2501, 3532, 3879, 4234, 4373, 6110, 6275, 6870
XcmI CCANNNNNNNNNTGG 1 cut(s) 6088
XhoI CTCGAG 1 cut(s) 2958
XmaJI CCTAGG 1 cut(s) 6631
XmiI GTMKAC 4 cut(s) 3068, 3267, 3336, 4932
XmnI GAANNNNTTC 7 cut(s) 842, 2906, 3962, 4293, 5600, 6698, 6944
ZraI GACGTC 3 cut(s) 3835, 6619, 6826
ZrmI AGTACT 4 cut(s) 4282, 6136, 6537, 7300
Zsp2I ATGCAT 3 cut(s) 1278, 2897, 4655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.