RLG00000029295

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018671
Physical Location & Seq
Reverse (-)
36167048 .. 36167839
792 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029295

Sequence Viewer

Length: 633 bp
ATGGCAGTGGCGACACTTGGAGCGGCGTTCCTAAAAATCTGCGATCAAGTCACCCAAGCGATGGAGAAGAACACAAATATAAAGCTGAAACCCGTCCTGGGTATCTTAGAGGACACGCTCAATTCCTGGAGAGATAAAATCATCCAGCCCATTCAACAAGGCCACCAGATTTTCGACAATCAAAACGACAAGATCGAGGCGTTATTTGCGAGAGCATTTGATGCTTATAAGAAGAGGCTGCTCCGGTTGCGAAAGCATTTGGTGCCGTTGACGGCGGAGGAAGAGGCTGCTCTGGTTGTGTTCCGGAGGCTGTTTGCGGTGTTGATAGAGGCGGAGGAGAAGAGGGAGTTGCCCCGGTTTTTTAGGTTCCTGGTTTTGGATATACGAAGCAAAATGTACTGGTTGTTGTTGCTGCCATTTTTGATGCACAAGCAGCCTAAGCTCCTTACCTCCTCTTTCAGAGCGAAGATGGAGGAGGGGGTGGAGGTGGTTCGGAGGAGCAGCAGCGAGGTTTGTGACAAGTGGCGGCTGCTCAAGAACACTCGTACTTTTAGTGGGTTAGTGCGGCTGGATCAGTATCTGACTCGTTGTCTACAGACATGTGCAAACCTGGAGGCTGGATTTATCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

24.48

Weight (kDa)

9.63

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018671)

Species Orthologous Gene IDs
rosa_laevigata RLG00000029295 RLG00000029491 RLG00000029777
rosa_multiflora Rmu_sc0002160.1_g000004 Rmu_sc0008098.1_g000001
rosa_roxburghii Rroxscaffold_4G00314680
rosa_rugosa Rorug01G0132300.1
rosa_samantha Rh1AG152800 Rh1BG121900 Rh1CG099200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 262
AccB7I CCANNNNNTGG 1 cut(s) 61
AccBSI CCGCTC 1 cut(s) 23
AccI GTMKAC 1 cut(s) 592
AccIII TCCGGA 1 cut(s) 303
AciI CCGC 6 cut(s) 23, 275, 317, 332, 526, 565
AclWI GGATC 1 cut(s) 579
AfaI GTAC 2 cut(s) 398, 547
AfiI CCNNNNNNNGG 3 cut(s) 61, 98, 376
AflIII ACRYGT 1 cut(s) 599
AgsI TTSAA 1 cut(s) 155
AhdI GACNNNNNGTC 1 cut(s) 588
AjnI CCWGG 4 cut(s) 96, 125, 369, 609
AluBI AGCT 2 cut(s) 85, 442
AluI AGCT 2 cut(s) 85, 442
AlwI GGATC 1 cut(s) 579
AlwNI CAGNNNCTG 1 cut(s) 580
Aor13HI TCCGGA 1 cut(s) 303
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 7 cut(s) 238, 287, 412, 433, 501, 504, 529
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 1 cut(s) 43
BanI GGYRCC 1 cut(s) 262
BbvI GCAGC 7 cut(s) 225, 274, 399, 445, 513, 516, 516
BccI CCATC 2 cut(s) 55, 463
BceAI ACGGC 2 cut(s) 250, 288
BciT130I CCWGG 4 cut(s) 98, 127, 371, 611
BcnI CCSGG 1 cut(s) 355
BfaI CTAG 1 cut(s) 631
BfmI CTRYAG 1 cut(s) 593
Bme1390I CCNGG 5 cut(s) 98, 127, 355, 371, 611
BmeRI GACNNNNNGTC 1 cut(s) 588
BmiI GGNNCC 2 cut(s) 264, 368
BmrFI CCNGG 5 cut(s) 98, 127, 355, 371, 611
BmsI GCATC 2 cut(s) 211, 414
BpmI CTGGAG 2 cut(s) 148, 632
Bpu10I CCTNAGC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 576
BsaJI CCNNGG 2 cut(s) 97, 353
BsaWI WCCGGW 2 cut(s) 243, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 98, 376
Bse1I ACTGG 1 cut(s) 404
Bse8I GATNNNNATC 1 cut(s) 576
BseAI TCCGGA 1 cut(s) 303
BseBI CCWGG 4 cut(s) 98, 127, 371, 611
BseDI CCNNGG 2 cut(s) 97, 353
BseGI GGATG 1 cut(s) 141
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 3 cut(s) 61, 98, 376
BseNI ACTGG 1 cut(s) 404
BseRI GAGGAG 4 cut(s) 350, 442, 488, 511
BseXI GCAGC 7 cut(s) 225, 274, 399, 445, 513, 516, 516
BshFI GGCC 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 262
BsiSI CCGG 3 cut(s) 244, 304, 355
BslI CCNNNNNNNGG 3 cut(s) 61, 98, 376
BsnI GGCC 1 cut(s) 162
Bsp13I TCCGGA 1 cut(s) 303
Bsp143I GATC 3 cut(s) 43, 192, 571
BspACI CCGC 6 cut(s) 23, 275, 317, 332, 526, 565
BspANI GGCC 1 cut(s) 162
BspEI TCCGGA 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 264, 368
BspPI GGATC 1 cut(s) 579
BspT107I GGYRCC 1 cut(s) 262
BsrBI CCGCTC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 404
BssECI CCNNGG 2 cut(s) 97, 353
BssMI GATC 3 cut(s) 43, 192, 571
Bst2UI CCWGG 4 cut(s) 98, 127, 371, 611
Bst6I CTCTTC 3 cut(s) 227, 276, 335
BstAPI GCANNNNNTGC 2 cut(s) 221, 262
BstDEI CTNAG 2 cut(s) 106, 438
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 3 cut(s) 46, 195, 574
BstMBI GATC 3 cut(s) 43, 192, 571
BstMWI GCNNNNNNNGC 6 cut(s) 206, 221, 247, 262, 433, 439
BstNI CCWGG 4 cut(s) 98, 127, 371, 611
BstNSI RCATGY 1 cut(s) 603
BstSCI CCNGG 5 cut(s) 96, 125, 353, 369, 609
BstSFI CTRYAG 1 cut(s) 593
BstV1I GCAGC 7 cut(s) 225, 274, 399, 445, 513, 516, 516
BsuRI GGCC 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
CaiI CAGNNNCTG 1 cut(s) 580
Csp6I GTAC 2 cut(s) 397, 546
CviAII CATG 1 cut(s) 600
CviQI GTAC 2 cut(s) 397, 546
DdeI CTNAG 2 cut(s) 106, 438
DpnI GATC 3 cut(s) 45, 194, 573
DpnII GATC 3 cut(s) 43, 192, 571
DriI GACNNNNNGTC 1 cut(s) 588
Eam1104I CTCTTC 3 cut(s) 227, 276, 335
Eam1105I GACNNNNNGTC 1 cut(s) 588
EarI CTCTTC 3 cut(s) 227, 276, 335
EciI GGCGGA 2 cut(s) 290, 347
EcoRII CCWGG 4 cut(s) 96, 125, 369, 609
FaeI CATG 1 cut(s) 603
FaiI YATR 4 cut(s) 80, 228, 383, 601
FatI CATG 1 cut(s) 599
FblI GTMKAC 1 cut(s) 592
FokI GGATG 1 cut(s) 128
FspBI CTAG 1 cut(s) 631
GsuI CTGGAG 2 cut(s) 148, 632
HaeIII GGCC 1 cut(s) 162
HapII CCGG 3 cut(s) 244, 304, 355
Hin1II CATG 1 cut(s) 603
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 1 cut(s) 583
HpaII CCGG 3 cut(s) 244, 304, 355
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 2 cut(s) 270, 593
Hpy188I TCNGA 3 cut(s) 461, 495, 582
Hpy188III TCNNGA 2 cut(s) 304, 535
Hpy8I GTNNAC 2 cut(s) 270, 593
HpyCH4V TGCA 2 cut(s) 427, 605
HpyF10VI GCNNNNNNNGC 6 cut(s) 206, 221, 247, 262, 433, 439
HpyF3I CTNAG 2 cut(s) 106, 438
Hsp92II CATG 1 cut(s) 603
Kpn2I TCCGGA 1 cut(s) 303
Kzo9I GATC 3 cut(s) 43, 192, 571
LmnI GCTCC 4 cut(s) 20, 246, 447, 498
Lsp1109I GCAGC 7 cut(s) 225, 274, 399, 445, 513, 516, 516
LweI GCATC 2 cut(s) 211, 414
MaeI CTAG 1 cut(s) 631
MaeIII GTNAC 2 cut(s) 49, 515
MalI GATC 3 cut(s) 45, 194, 573
MbiI CCGCTC 1 cut(s) 23
MboI GATC 3 cut(s) 43, 192, 571
MboII GAAGA 5 cut(s) 79, 244, 293, 352, 478
MluCI AATT 1 cut(s) 121
MlyI GAGTC 1 cut(s) 577
MroI TCCGGA 1 cut(s) 303
MspI CCGG 3 cut(s) 244, 304, 355
MspR9I CCNGG 5 cut(s) 98, 127, 355, 371, 611
MvaI CCWGG 4 cut(s) 98, 127, 371, 611
MwoI GCNNNNNNNGC 6 cut(s) 206, 221, 247, 262, 433, 439
NciI CCSGG 1 cut(s) 355
NdeII GATC 3 cut(s) 43, 192, 571
NlaIII CATG 1 cut(s) 603
NlaIV GGNNCC 2 cut(s) 264, 368
NmuCI GTSAC 2 cut(s) 49, 515
NspI RCATGY 1 cut(s) 603
PciI ACATGT 1 cut(s) 599
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PflMI CCANNNNNTGG 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 125
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
PscI ACATGT 1 cut(s) 599
PsiI TTATAA 1 cut(s) 228
Psp6I CCWGG 4 cut(s) 96, 125, 369, 609
PspGI CCWGG 4 cut(s) 96, 125, 369, 609
PspN4I GGNNCC 2 cut(s) 264, 368
PstNI CAGNNNCTG 1 cut(s) 580
RsaI GTAC 2 cut(s) 398, 547
RsaNI GTAC 2 cut(s) 397, 546
Sau3AI GATC 3 cut(s) 43, 192, 571
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 5 cut(s) 98, 127, 355, 371, 611
SetI ASST 7 cut(s) 87, 368, 444, 452, 489, 513, 612
SfaNI GCATC 2 cut(s) 211, 414
SfcI CTRYAG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 1 cut(s) 121
SsiI CCGC 6 cut(s) 23, 275, 317, 332, 526, 565
SspMI CTAG 1 cut(s) 631
StyD4I CCNGG 5 cut(s) 96, 125, 353, 369, 609
TaqI TCGA 2 cut(s) 174, 195
TasI AATT 1 cut(s) 121
TatI WGTACW 1 cut(s) 396
TauI GCSGC 3 cut(s) 26, 529, 568
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 2 cut(s) 49, 515
TseI GCWGC 7 cut(s) 238, 287, 412, 433, 501, 504, 529
Tsp45I GTSAC 2 cut(s) 49, 515
TspRI CASTG 1 cut(s) 12
Van91I CCANNNNNTGG 1 cut(s) 61
XceI RCATGY 1 cut(s) 603
XmiI GTMKAC 1 cut(s) 592
XspI CTAG 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.