Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018671

Physical Location & Seq

Genomic Coordinates Reverse (-)

38670471 .. 38671175

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAGAAGAACACAAATATAGAGCTGAAACAGGTCCTGGGTAACTTAGAGGCCAAGTTCAATTCCTTGAGAGATAAAATCATCCAGCCCATTCAACAAGGCCACCAGATTTTCGACAATCAAAACGACAAGATCGAGTCCATCGTCGTCGAATTGCACAAGGGAGCGAAGCTCGTCGCGAAAGTGACCAAGCTCGGATCATGGAGCTATTACTTGCTCGACGAGGACGAGTACATCGGGAGGCTTTTAAATTTGGATTGGTACTTAAAAACTCTGCTGCGTACGACTCTGCATAGGGCGTTATTTGCGAGAGCATTTGATGCTTATAAGAAGAAGGCCGGAACGGTGCCGTTGACGGCGGAGAAAGAGGCTGCTCTGGTTGTGTTCCGGAGGCTGTTTGCGGCGTTGATAGAGGCGGAGGAGAAGAGGGAGGCGCCCCCGTTGTTTACGTTCCTGGTTTCGGATATACGAAGCAAAATGTACTGGTTGTTGTTGCAGCCATTTTTGATGCACCAGCAGCCTGAGCTCTTTACCTCCTCCTTCAGAGCGGAGATGGAGAAGGGGGTGGAGGTGGTTCGGAGGAGCAGCAGCAAGTGGCGGCTGCGCTACTACACTCGTACTTTTAGTGGGTTAGTGCGGCTGGATCAGGATCTGAGTCATTGTCTACAGAAATGTGCAAACCTGCAGGCTGGATTTATCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

234

Amino Acids

27.24

Weight (kDa)

9.41

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018671)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029295 RLG00000029491 RLG00000029777
rosa_multiflora	Rmu_sc0002160.1_g000004 Rmu_sc0008098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314680
rosa_rugosa	Rorug01G0132300.1
rosa_samantha	Rh1AG152800 Rh1BG121900 Rh1CG099200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
Acc36I	ACCTGC	1 cut(s)	690
AccB1I	GGYRCC	2 cut(s)	346, 433
AccBSI	CCGCTC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	664
AccII	CGCG	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	387
AciI	CCGC	6 cut(s)	359, 401, 416, 548, 598, 637
AclWI	GGATC	3 cut(s)	205, 651, 657
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	526
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	5 cut(s)	233, 263, 283, 482, 619
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	61, 95
AjnI	CCWGG	2 cut(s)	36, 453
AluBI	AGCT	5 cut(s)	25, 172, 193, 207, 526
AluI	AGCT	5 cut(s)	25, 172, 193, 207, 526
Alw21I	GWGCWC	1 cut(s)	528
AlwI	GGATC	3 cut(s)	205, 651, 657
AlwNI	CAGNNNCTG	2 cut(s)	37, 652
Aor13HI	TCCGGA	1 cut(s)	387
AoxI	GGCC	3 cut(s)	51, 100, 336
ApeKI	GCWGC	7 cut(s)	277, 371, 496, 517, 585, 588, 601
ApoI	RAATTY	1 cut(s)	250
AspLEI	GCGC	2 cut(s)	436, 606
AspS9I	GGNCC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	2 cut(s)	346, 433
BanII	GRGCYC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	7 cut(s)	264, 358, 508, 529, 588, 597, 600
BccI	CCATC	2 cut(s)	149, 547
BceAI	ACGGC	2 cut(s)	334, 372
BciT130I	CCWGG	2 cut(s)	38, 455
BfaI	CTAG	1 cut(s)	703
BfmI	CTRYAG	2 cut(s)	665, 683
BfoI	RGCGCY	1 cut(s)	437
BfuAI	ACCTGC	1 cut(s)	690
Bme1390I	CCNGG	2 cut(s)	38, 455
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	348, 435
BmrFI	CCNGG	2 cut(s)	38, 455
BmsI	GCATC	2 cut(s)	310, 498
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	648
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	488
Bse8I	GATNNNNATC	1 cut(s)	648
BseAI	TCCGGA	1 cut(s)	387
BseBI	CCWGG	2 cut(s)	38, 455
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	81
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMII	CTCAG	2 cut(s)	513, 644
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	3 cut(s)	434, 526, 595
BseXI	GCAGC	7 cut(s)	264, 358, 508, 529, 588, 597, 600
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	3 cut(s)	53, 102, 338
BshNI	GGYRCC	2 cut(s)	346, 433
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	339, 388
BsiWI	CGTACG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	460
BsnI	GGCC	3 cut(s)	53, 102, 338
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp13I	TCCGGA	1 cut(s)	387
Bsp143I	GATC	4 cut(s)	132, 197, 643, 649
Bsp68I	TCGCGA	1 cut(s)	179
BspACI	CCGC	6 cut(s)	359, 401, 416, 548, 598, 637
BspANI	GGCC	3 cut(s)	53, 102, 338
BspCNI	CTCAG	2 cut(s)	514, 645
BspEI	TCCGGA	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	348, 435
BspMAI	CTGCAG	1 cut(s)	687
BspMI	ACCTGC	1 cut(s)	690
BspPI	GGATC	3 cut(s)	205, 651, 657
BspT107I	GGYRCC	2 cut(s)	346, 433
BsrBI	CCGCTC	1 cut(s)	548
BsrI	ACTGG	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	4 cut(s)	132, 197, 643, 649
BssNI	GRCGYC	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	38, 455
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	419
BstACI	GRCGYC	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	3 cut(s)	46, 522, 653
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	2 cut(s)	436, 606
BstKTI	GATC	4 cut(s)	135, 200, 646, 652
BstMBI	GATC	4 cut(s)	132, 197, 643, 649
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 320, 517, 523
BstNI	CCWGG	2 cut(s)	38, 455
BstSCI	CCNGG	2 cut(s)	36, 453
BstSFI	CTRYAG	2 cut(s)	665, 683
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	7 cut(s)	264, 358, 508, 529, 588, 597, 600
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	53, 102, 338
BtsCI	GGATG	1 cut(s)	81
BtuMI	TCGCGA	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	690
Cac8I	GCNNGC	1 cut(s)	687
CaiI	CAGNNNCTG	2 cut(s)	37, 652
CfoI	GCGC	2 cut(s)	436, 606
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	5 cut(s)	232, 262, 282, 481, 618
CviAII	CATG	1 cut(s)	201
CviQI	GTAC	5 cut(s)	232, 262, 282, 481, 618
DdeI	CTNAG	3 cut(s)	46, 522, 653
DinI	GGCGCC	1 cut(s)	435
DpnI	GATC	4 cut(s)	134, 199, 645, 651
DpnII	GATC	4 cut(s)	132, 197, 643, 649
DraI	TTTAAA	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
EciI	GGCGGA	2 cut(s)	374, 431
Ecl136II	GAGCTC	1 cut(s)	526
Eco24I	GRGCYC	1 cut(s)	528
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	526
EcoICRI	GAGCTC	1 cut(s)	526
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	36, 453
EcoT38I	GRGCYC	1 cut(s)	528
EgeI	GGCGCC	1 cut(s)	435
EheI	GGCGCC	1 cut(s)	435
FaeI	CATG	1 cut(s)	204
FaiI	YATR	5 cut(s)	20, 202, 294, 327, 467
FatI	CATG	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	664
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	528
FspBI	CTAG	1 cut(s)	703
GlaI	GCGC	2 cut(s)	435, 605
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	3 cut(s)	53, 102, 338
HapII	CCGG	2 cut(s)	339, 388
HhaI	GCGC	2 cut(s)	436, 606
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	1 cut(s)	204
Hin6I	GCGC	2 cut(s)	434, 604
HinP1I	GCGC	2 cut(s)	434, 604
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	3 cut(s)	137, 286, 655
HpaII	CCGG	2 cut(s)	339, 388
Hpy166II	GTNNAC	3 cut(s)	354, 447, 665
Hpy188I	TCNGA	5 cut(s)	197, 463, 545, 579, 654
Hpy188III	TCNNGA	4 cut(s)	178, 238, 388, 647
Hpy8I	GTNNAC	3 cut(s)	354, 447, 665
Hpy99I	CGWCG	4 cut(s)	149, 152, 179, 224
HpyAV	CCTTC	3 cut(s)	328, 550, 553
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	6 cut(s)	157, 292, 496, 511, 677, 685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 320, 517, 523
HpyF3I	CTNAG	3 cut(s)	46, 522, 653
HpySE526I	ACGT	1 cut(s)	449
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	1 cut(s)	204
HspAI	GCGC	2 cut(s)	434, 604
KasI	GGCGCC	1 cut(s)	433
Kpn2I	TCCGGA	1 cut(s)	387
Kzo9I	GATC	4 cut(s)	132, 197, 643, 649
LmnI	GCTCC	3 cut(s)	164, 204, 582
Lsp1109I	GCAGC	7 cut(s)	264, 358, 508, 529, 588, 597, 600
LweI	GCATC	2 cut(s)	310, 498
MaeI	CTAG	1 cut(s)	703
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	2 cut(s)	41, 184
MalI	GATC	4 cut(s)	134, 199, 645, 651
MbiI	CCGCTC	1 cut(s)	548
MboI	GATC	4 cut(s)	132, 197, 643, 649
MboII	GAAGA	3 cut(s)	19, 343, 436
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	1 cut(s)	528
MluCI	AATT	3 cut(s)	61, 152, 250
Mly113I	GGCGCC	1 cut(s)	434
MlyI	GAGTC	3 cut(s)	146, 280, 664
MroI	TCCGGA	1 cut(s)	387
MseI	TTAA	2 cut(s)	248, 266
MspI	CCGG	2 cut(s)	339, 388
MspR9I	CCNGG	2 cut(s)	38, 455
MvaI	CCWGG	2 cut(s)	38, 455
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	305, 320, 517, 523
NarI	GGCGCC	1 cut(s)	434
NdeII	GATC	4 cut(s)	132, 197, 643, 649
NlaIII	CATG	1 cut(s)	204
NlaIV	GGNNCC	2 cut(s)	348, 435
NmuCI	GTSAC	1 cut(s)	184
NruI	TCGCGA	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 141, 225
Pfl23II	CGTACG	1 cut(s)	281
PleI	GAGTC	3 cut(s)	145, 280, 663
PluTI	GGCGCC	1 cut(s)	437
PpsI	GAGTC	3 cut(s)	145, 280, 663
PpuMI	RGGWCCY	1 cut(s)	34
PsiI	TTATAA	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	2 cut(s)	36, 453
PspGI	CCWGG	2 cut(s)	36, 453
PspLI	CGTACG	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	348, 435
PspPI	GGNCC	1 cut(s)	34
PspPPI	RGGWCCY	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	687
PstNI	CAGNNNCTG	2 cut(s)	37, 652
PsuI	RGATCY	1 cut(s)	649
RruI	TCGCGA	1 cut(s)	179
RsaI	GTAC	5 cut(s)	233, 263, 283, 482, 619
RsaNI	GTAC	5 cut(s)	232, 262, 282, 481, 618
SacI	GAGCTC	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	248, 266
Sau3AI	GATC	4 cut(s)	132, 197, 643, 649
Sau96I	GGNCC	1 cut(s)	34
SbfI	CCTGCAGG	1 cut(s)	687
SchI	GAGTC	3 cut(s)	146, 280, 664
ScrFI	CCNGG	2 cut(s)	38, 455
SdaI	CCTGCAGG	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	528
SfaNI	GCATC	2 cut(s)	310, 498
SfcI	CTRYAG	2 cut(s)	665, 683
SfoI	GGCGCC	1 cut(s)	435
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse8387I	CCTGCAGG	1 cut(s)	687
Sse9I	AATT	3 cut(s)	61, 152, 250
SsiI	CCGC	6 cut(s)	359, 401, 416, 548, 598, 637
SspDI	GGCGCC	1 cut(s)	433
SspMI	CTAG	1 cut(s)	703
SstI	GAGCTC	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	36, 453
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	4 cut(s)	114, 135, 150, 219
TasI	AATT	3 cut(s)	61, 152, 250
TatI	WGTACW	2 cut(s)	231, 480
TauI	GCSGC	3 cut(s)	404, 601, 640
Tru1I	TTAA	2 cut(s)	248, 266
Tru9I	TTAA	2 cut(s)	248, 266
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	7 cut(s)	277, 371, 496, 517, 585, 588, 601
Tsp45I	GTSAC	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	664
XspI	CTAG	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.