RLG00000029491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018671
Physical Location & Seq
Forward (+)
39458230 .. 39458559
330 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029491

Sequence Viewer

Length: 330 bp
ATGCATACGACTCTGTATAGGGCGTTATCTGACGCTTATAAGAAGGCCGTGGAGGGCGGAGCGGTGCAGTTGACGGCGGAGCGGGGAAGTGGTGAAGAGGAAGAGGCTGATCTGGTTGTGTTCCGGAGGCTGTTTGCGGCGTCGATAGAGGCGGAGGAGAAGAGGAAGGCGCCCCTGTCGTTTAGGTTCCTGGTTTTGAATATACTCAGCAAAATATACTCGTTGCTGCCATTTTTGATGCACAACAATCCTAAGCTCCTCACCTCCTCTTTCAGAGCGGAGATGGAGAAGGGGTTGGAGGTGGTTCGTAGCAGCACCGGGGTCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.2

Weight (kDa)

8.03

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018671)

Species Orthologous Gene IDs
rosa_laevigata RLG00000029295 RLG00000029491 RLG00000029777
rosa_multiflora Rmu_sc0002160.1_g000004 Rmu_sc0008098.1_g000001
rosa_roxburghii Rroxscaffold_4G00314680
rosa_rugosa Rorug01G0132300.1
rosa_samantha Rh1AG152800 Rh1BG121900 Rh1CG099200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 169
AccBSI CCGCTC 3 cut(s) 62, 82, 278
AccIII TCCGGA 1 cut(s) 123
AciI CCGC 7 cut(s) 57, 62, 77, 82, 137, 152, 278
AcyI GRCGYC 2 cut(s) 140, 170
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Aor13HI TCCGGA 1 cut(s) 123
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 226, 312
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 322
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 104, 253
AvaII GGWCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 213, 324
BccI CCATC 1 cut(s) 277
BceAI ACGGC 2 cut(s) 32, 90
BciT130I CCWGG 1 cut(s) 191
BcnI CCSGG 1 cut(s) 319
BfoI RGCGCY 1 cut(s) 173
BisI GCNGC 3 cut(s) 138, 227, 313
BlsI GCNGC 3 cut(s) 139, 228, 314
Bme1390I CCNGG 2 cut(s) 191, 319
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 3 cut(s) 171, 188, 323
BmrFI CCNGG 2 cut(s) 191, 319
BmsI GCATC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 319
BsaHI GRCGYC 2 cut(s) 140, 170
BsaJI CCNNGG 2 cut(s) 48, 318
BsaWI WCCGGW 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
BseAI TCCGGA 1 cut(s) 123
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 48, 318
BseMII CTCAG 1 cut(s) 220
BseRI GAGGAG 3 cut(s) 170, 248, 256
BseXI GCAGC 2 cut(s) 213, 324
BsgI GTGCAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 169
BsiSI CCGG 2 cut(s) 124, 318
BsnI GGCC 1 cut(s) 47
Bsp13I TCCGGA 1 cut(s) 123
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 7 cut(s) 57, 62, 77, 82, 137, 152, 278
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 219
BspEI TCCGGA 1 cut(s) 123
BspLI GGNNCC 3 cut(s) 171, 188, 323
BspT107I GGYRCC 1 cut(s) 169
BsrBI CCGCTC 3 cut(s) 62, 82, 278
BssECI CCNNGG 2 cut(s) 48, 318
BssMI GATC 1 cut(s) 109
BssNI GRCGYC 2 cut(s) 140, 170
Bst2UI CCWGG 1 cut(s) 191
Bst6I CTCTTC 3 cut(s) 90, 96, 155
BstACI GRCGYC 2 cut(s) 140, 170
BstDEI CTNAG 2 cut(s) 206, 252
BstDSI CCRYGG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 2 cut(s) 189, 317
BstV1I GCAGC 2 cut(s) 213, 324
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 48
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 322
CseI GACGC 2 cut(s) 41, 129
CviJI RGCY 4 cut(s) 47, 107, 130, 256
CviKI_1 RGCY 4 cut(s) 47, 107, 130, 256
DdeI CTNAG 2 cut(s) 206, 252
DinI GGCGCC 1 cut(s) 171
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 3 cut(s) 90, 96, 155
EarI CTCTTC 3 cut(s) 90, 96, 155
EciI GGCGGA 3 cut(s) 72, 92, 167
Eco47I GGWCC 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
FaiI YATR 5 cut(s) 6, 18, 39, 203, 217
FauI CCCGC 1 cut(s) 75
Fnu4HI GCNGC 3 cut(s) 138, 227, 313
Fsp4HI GCNGC 3 cut(s) 138, 227, 313
GlaI GCGC 1 cut(s) 171
GluI GCNGC 3 cut(s) 138, 227, 313
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 1 cut(s) 47
HapII CCGG 2 cut(s) 124, 318
HgaI GACGC 2 cut(s) 41, 129
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 2 cut(s) 140, 170
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 1 cut(s) 10
HpaII CCGG 2 cut(s) 124, 318
HphI GGTGA 2 cut(s) 104, 253
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 31, 275
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 72
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 37, 160, 283
HpyCH4V TGCA 3 cut(s) 4, 67, 241
HpyF3I CTNAG 2 cut(s) 206, 252
Hsp92I GRCGYC 2 cut(s) 140, 170
HspAI GCGC 1 cut(s) 170
KasI GGCGCC 1 cut(s) 169
Kpn2I TCCGGA 1 cut(s) 123
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 3 cut(s) 59, 79, 261
LpnPI CCDG 5 cut(s) 98, 137, 176, 188, 203
Lsp1109I GCAGC 2 cut(s) 213, 324
LweI GCATC 1 cut(s) 228
MalI GATC 1 cut(s) 111
MbiI CCGCTC 3 cut(s) 62, 82, 278
MboI GATC 1 cut(s) 109
MboII GAAGA 3 cut(s) 107, 113, 172
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 1 cut(s) 276
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 123
MspI CCGG 2 cut(s) 124, 318
MspR9I CCNGG 2 cut(s) 191, 319
MvaI CCWGG 1 cut(s) 191
NarI GGCGCC 1 cut(s) 170
NciI CCSGG 1 cut(s) 319
NdeII GATC 1 cut(s) 109
NlaIV GGNNCC 3 cut(s) 171, 188, 323
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 3 cut(s) 139, 228, 314
PleI GAGTC 1 cut(s) 4
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 4
PsiI TTATAA 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 171, 188, 323
PspPI GGNCC 1 cut(s) 322
SatI GCNGC 3 cut(s) 138, 227, 313
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 191, 319
SetI ASST 4 cut(s) 188, 258, 266, 303
SfaNI GCATC 1 cut(s) 228
SfoI GGCGCC 1 cut(s) 171
SgeI CNNG 8 cut(s) 61, 95, 125, 136, 187, 202, 203, 232
SinI GGWCC 1 cut(s) 322
SsiI CCGC 7 cut(s) 57, 62, 77, 82, 137, 152, 278
SspDI GGCGCC 1 cut(s) 169
StyD4I CCNGG 2 cut(s) 189, 317
TaqI TCGA 1 cut(s) 143
TauI GCSGC 1 cut(s) 140
TseI GCWGC 2 cut(s) 226, 312
VpaK11BI GGWCC 1 cut(s) 322
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.