Rh1CG099200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018671
Physical Location & Seq
Reverse (-)
20918077 .. 20919250
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG099200.1

Sequence Viewer

Length: 513 bp
ATGTGGAGGCTTCTTCAATTGGATTGGTACTTGAAATATCTGCTGCAAACGACTCTGTATAGGGCGTTATCTGACGCTTATAAGAAGGCCGTGGAGGGCGGAGCGGTGCGGTTGACGGCGGAGCGGGGAAGTGGTGAAGAGGAAGAGGCTGATCTGGTTGTGTTACGGAGGCTGTTTGCGGCGTCGATAGAGGCGGAGGAGAAGAGGAAGGCGCCCATGTCGTTTAGGTTCCTGGTTTTGAATATACTCAGCAAAATATACTCGTTGCTGCCATTTTTGATGCACAACAATCCTAAGCTCCTCACCTCCTCTTTCAGAGCGGAGATGGAGAAGGGGTTGGAGGTGGTTCGGAGGTGCACCGGGGTTGGTAACAAGGGGCGGCTACGCAAGACCAATAAGTACGACAGTCGTACTTTTAGTGGGTTAGTGCGGCTGGATAAGTGTCTGAGTCAGTGTCTACATGGACTTGTCCGTAAAGCAATCCAGCACGCATTGGATTTATCATCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.42

Weight (kDa)

9.8

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018671)

Species Orthologous Gene IDs
rosa_laevigata RLG00000029295 RLG00000029491 RLG00000029777
rosa_multiflora Rmu_sc0002160.1_g000004 Rmu_sc0008098.1_g000001
rosa_roxburghii Rroxscaffold_4G00314680
rosa_rugosa Rorug01G0132300.1
rosa_samantha Rh1AG152800 Rh1BG121900 Rh1CG099200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 211
AccBSI CCGCTC 3 cut(s) 104, 124, 320
AccI GTMKAC 1 cut(s) 457
AcyI GRCGYC 2 cut(s) 182, 212
AfaI GTAC 3 cut(s) 29, 401, 412
AgsI TTSAA 3 cut(s) 17, 34, 241
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
Alw21I GWGCWC 1 cut(s) 359
Alw44I GTGCAC 1 cut(s) 355
AoxI GGCC 1 cut(s) 87
ApaLI GTGCAC 1 cut(s) 355
ApeKI GCWGC 2 cut(s) 43, 268
AspLEI GCGC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 146, 295
BaeGI GKGCMC 1 cut(s) 359
BanI GGYRCC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 30, 255
BccI CCATC 1 cut(s) 319
BceAI ACGGC 2 cut(s) 74, 132
BciT130I CCWGG 1 cut(s) 233
BcnI CCSGG 1 cut(s) 361
BfaI CTAG 1 cut(s) 507
BfoI RGCGCY 1 cut(s) 215
BisI GCNGC 5 cut(s) 44, 180, 269, 380, 431
BlsI GCNGC 5 cut(s) 45, 181, 270, 381, 432
Bme1390I CCNGG 2 cut(s) 233, 361
BmiI GGNNCC 2 cut(s) 213, 230
BmrFI CCNGG 2 cut(s) 233, 361
BmsI GCATC 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 361
BsaHI GRCGYC 2 cut(s) 182, 212
BsaJI CCNNGG 2 cut(s) 90, 360
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 2 cut(s) 90, 360
BseMII CTCAG 2 cut(s) 262, 437
BseRI GAGGAG 3 cut(s) 212, 290, 298
BseSI GKGCMC 1 cut(s) 359
BseXI GCAGC 2 cut(s) 30, 255
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 360
BsnI GGCC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 1 cut(s) 151
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 261, 438
BspLI GGNNCC 2 cut(s) 213, 230
BspT107I GGYRCC 1 cut(s) 211
BsrBI CCGCTC 3 cut(s) 104, 124, 320
BssECI CCNNGG 2 cut(s) 90, 360
BssMI GATC 1 cut(s) 151
BssNI GRCGYC 2 cut(s) 182, 212
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 3 cut(s) 132, 138, 197
BstACI GRCGYC 2 cut(s) 182, 212
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 3 cut(s) 248, 294, 446
BstDSI CCRYGG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 231, 359
BstSLI GKGCMC 1 cut(s) 359
BstV1I GCAGC 2 cut(s) 30, 255
BsuRI GGCC 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 1 cut(s) 489
CfoI GCGC 1 cut(s) 214
CseI GACGC 2 cut(s) 83, 171
Csp6I GTAC 3 cut(s) 28, 400, 411
CviAII CATG 2 cut(s) 217, 461
CviJI RGCY 7 cut(s) 10, 89, 149, 172, 298, 382, 433
CviKI_1 RGCY 7 cut(s) 10, 89, 149, 172, 298, 382, 433
CviQI GTAC 3 cut(s) 28, 400, 411
DdeI CTNAG 3 cut(s) 248, 294, 446
DinI GGCGCC 1 cut(s) 213
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 3 cut(s) 132, 138, 197
EarI CTCTTC 3 cut(s) 132, 138, 197
EciI GGCGGA 3 cut(s) 114, 134, 209
EcoRII CCWGG 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 2 cut(s) 220, 464
FaiI YATR 6 cut(s) 60, 81, 218, 245, 259, 462
FatI CATG 2 cut(s) 216, 460
FauI CCCGC 1 cut(s) 117
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 5 cut(s) 44, 180, 269, 380, 431
Fsp4HI GCNGC 5 cut(s) 44, 180, 269, 380, 431
FspBI CTAG 1 cut(s) 507
GlaI GCGC 1 cut(s) 213
GluI GCNGC 5 cut(s) 44, 180, 269, 380, 431
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 360
HgaI GACGC 2 cut(s) 83, 171
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 2 cut(s) 182, 212
Hin1II CATG 2 cut(s) 220, 464
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HinfI GANTC 2 cut(s) 52, 448
HpaII CCGG 1 cut(s) 360
HphI GGTGA 2 cut(s) 146, 295
Hpy166II GTNNAC 3 cut(s) 114, 357, 458
Hpy188I TCNGA 4 cut(s) 73, 317, 351, 447
Hpy8I GTNNAC 3 cut(s) 114, 357, 458
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 3 cut(s) 79, 202, 325
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 3 cut(s) 46, 283, 357
HpyF3I CTNAG 3 cut(s) 248, 294, 446
Hsp92I GRCGYC 2 cut(s) 182, 212
Hsp92II CATG 2 cut(s) 220, 464
HspAI GCGC 1 cut(s) 212
KasI GGCGCC 1 cut(s) 211
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 3 cut(s) 101, 121, 303
LpnPI CCDG 6 cut(s) 140, 218, 245, 373, 419, 497
Lsp1109I GCAGC 2 cut(s) 30, 255
LweI GCATC 1 cut(s) 270
MaeI CTAG 1 cut(s) 507
MaeIII GTNAC 2 cut(s) 162, 368
MalI GATC 1 cut(s) 153
MbiI CCGCTC 3 cut(s) 104, 124, 320
MboI GATC 1 cut(s) 151
MboII GAAGA 4 cut(s) 5, 149, 155, 214
MfeI CAATTG 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 359
MluCI AATT 1 cut(s) 17
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 2 cut(s) 46, 457
MmeI TCCRAC 1 cut(s) 318
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 2 cut(s) 233, 361
MunI CAATTG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 233
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 1 cut(s) 361
NdeII GATC 1 cut(s) 151
NlaIII CATG 2 cut(s) 220, 464
NlaIV GGNNCC 2 cut(s) 213, 230
PkrI GCNGC 5 cut(s) 45, 181, 270, 381, 432
PleI GAGTC 2 cut(s) 46, 456
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 2 cut(s) 46, 456
PsiI TTATAA 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 213, 230
RsaI GTAC 3 cut(s) 29, 401, 412
RsaNI GTAC 3 cut(s) 28, 400, 411
SatI GCNGC 5 cut(s) 44, 180, 269, 380, 431
Sau3AI GATC 1 cut(s) 151
SchI GAGTC 2 cut(s) 46, 457
ScrFI CCNGG 2 cut(s) 233, 361
SduI GDGCHC 1 cut(s) 359
SetI ASST 5 cut(s) 230, 300, 308, 345, 356
SfaNI GCATC 1 cut(s) 270
SfoI GGCGCC 1 cut(s) 213
Sse9I AATT 1 cut(s) 17
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 2 cut(s) 231, 359
TaaI ACNGT 1 cut(s) 407
TaqI TCGA 1 cut(s) 185
TasI AATT 1 cut(s) 17
TauI GCSGC 3 cut(s) 182, 382, 433
TscAI CASTG 1 cut(s) 458
TseI GCWGC 2 cut(s) 43, 268
TspGWI ACGGA 2 cut(s) 181, 461
TspRI CASTG 1 cut(s) 458
VneI GTGCAC 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 457
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.