RLG00000029777

Protein SCAI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018671
Physical Location & Seq
Reverse (-)
48899752 .. 48902380
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029777

Sequence Viewer

Length: 852 bp
ATGCTCCTATCTTCGAGCTCTTCATATCAAGCTTCTGATGTTGGTTCCTCTCATCAGCCAAGTGGAAGCTTATTCACTATTTTCCTTACAGCTCCAATGCAGGCTTTCTGTTTATTGCTTGGTGTTTCAGGCACTGATATTGACATGTTGAGTAGAAGATTGACACTTCCTCTGTTCTCATTTGAATTATATGAGTTATTTAGTTTTCCGGAGCATTTCCGGATATATATATATATATATATATATAACAAGGCTGAGAAGCTGCTTTCTAGTTCATTAAGTGACAGGGGGTCTACTTTGGCAACATCAGATACTATTGACCCTGTTTGGGCACAGGTTTTGACTGATCCATTCCTGAGGCGACTCCTATTGAGGTTCATCTTTTGTCGGGCGGTGCTATCACTCTATGCTCCAACCTTCAATAAGAAGGAATTTATTCCCAAGCCGTGGAGGGCGGAGCGGGGAAGTGGTGAAGAGGAAGAGGCTGATCGGGTTGTGTTCCGGAGGCTGTTTGCGGCGTCAATAGAGGCGGAGGAGAAGAGGAAGGCGCCCCTGTCGTTTAGGTTCCTGGTTTTGAATATACTCAGCAAAATATACTCGTTGCAGCCATTTTTGATGCACAACAATCCTAAGCTCCTCACCTCCTCTTTCAGAGCGGAGATGGAGAAGGGGTTGGAGGTGGTTCGGAGGAGCACCGGGGTTGGTAACAAGTGGCGGCTACGCAAGACCAATAAGTACGACAGTCGTACTTTTAGTGGGTTAGTGCGGCTGGATAAGTATCTGAGTCAGTGTCTACATGGACTTGTCCGTAAAGCAATCCAGCACGCATTGGATTTATCATCTAGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCAI

Protein Analysis

284

Amino Acids

32.37

Weight (kDa)

9.63

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAI PF12070 2 - 50 1.3e-06 Protein SCAI
SCAI PF12070 79 - 138 9.9e-17 Protein SCAI
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018671)

Species Orthologous Gene IDs
rosa_laevigata RLG00000029295 RLG00000029491 RLG00000029777
rosa_multiflora Rmu_sc0002160.1_g000004 Rmu_sc0008098.1_g000001
rosa_roxburghii Rroxscaffold_4G00314680
rosa_rugosa Rorug01G0132300.1
rosa_samantha Rh1AG152800 Rh1BG121900 Rh1CG099200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 547
AccB7I CCANNNNNTGG 1 cut(s) 447
AccBSI CCGCTC 2 cut(s) 460, 656
AccI GTMKAC 2 cut(s) 293, 793
AccIII TCCGGA 3 cut(s) 208, 219, 501
AciI CCGC 8 cut(s) 392, 455, 460, 515, 530, 656, 715, 766
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 431
AcyI GRCGYC 2 cut(s) 518, 548
AfaI GTAC 2 cut(s) 737, 748
AfiI CCNNNNNNNGG 2 cut(s) 328, 447
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 3 cut(s) 185, 421, 577
AhdI GACNNNNNGTC 1 cut(s) 289
AjnI CCWGG 1 cut(s) 567
AluBI AGCT 6 cut(s) 18, 32, 69, 92, 262, 634
AluI AGCT 6 cut(s) 18, 32, 69, 92, 262, 634
Alw21I GWGCWC 2 cut(s) 20, 695
AlwI GGATC 1 cut(s) 341
AlwNI CAGNNNCTG 1 cut(s) 134
Aor13HI TCCGGA 3 cut(s) 208, 219, 501
ApeKI GCWGC 2 cut(s) 262, 604
ApoI RAATTY 1 cut(s) 431
Asp700I GAANNNNTTC 1 cut(s) 435
AspLEI GCGC 1 cut(s) 550
AsuC2I CCSGG 1 cut(s) 697
AsuHPI GGTGA 2 cut(s) 482, 631
AxyI CCTNAGG 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 2 cut(s) 20, 695
BbvI GCAGC 2 cut(s) 249, 616
BccI CCATC 1 cut(s) 655
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 1 cut(s) 569
BcnI CCSGG 1 cut(s) 697
BfaI CTAG 2 cut(s) 270, 843
BfoI RGCGCY 1 cut(s) 551
BisI GCNGC 5 cut(s) 263, 516, 605, 716, 767
BlsI GCNGC 5 cut(s) 264, 517, 606, 717, 768
Bme1390I CCNGG 2 cut(s) 569, 697
BmeRI GACNNNNNGTC 1 cut(s) 289
BmiI GGNNCC 3 cut(s) 46, 549, 566
BmrFI CCNGG 2 cut(s) 569, 697
BmsI GCATC 1 cut(s) 606
Bpu10I CCTNAGC 1 cut(s) 630
BpuMI CCSGG 1 cut(s) 697
BsaBI GATNNNNATC 1 cut(s) 777
BsaHI GRCGYC 2 cut(s) 518, 548
BsaJI CCNNGG 2 cut(s) 446, 696
BsaWI WCCGGW 3 cut(s) 208, 219, 501
BsaXI ACNNNNNCTCC 2 cut(s) 656, 686
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 447
Bse21I CCTNAGG 1 cut(s) 356
Bse8I GATNNNNATC 1 cut(s) 777
BseAI TCCGGA 3 cut(s) 208, 219, 501
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 2 cut(s) 446, 696
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 2 cut(s) 328, 447
BseMII CTCAG 4 cut(s) 246, 347, 598, 773
BseRI GAGGAG 4 cut(s) 548, 626, 634, 703
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 2 cut(s) 249, 616
BshNI GGYRCC 1 cut(s) 547
BsiHKAI GWGCWC 2 cut(s) 20, 695
BsiSI CCGG 4 cut(s) 209, 220, 502, 696
BslI CCNNNNNNNGG 2 cut(s) 328, 447
Bsp1286I GDGCHC 3 cut(s) 20, 334, 695
Bsp13I TCCGGA 3 cut(s) 208, 219, 501
Bsp143I GATC 2 cut(s) 346, 487
BspACI CCGC 8 cut(s) 392, 455, 460, 515, 530, 656, 715, 766
BspCNI CTCAG 4 cut(s) 247, 348, 597, 774
BspEI TCCGGA 3 cut(s) 208, 219, 501
BspLI GGNNCC 3 cut(s) 46, 549, 566
BspPI GGATC 1 cut(s) 341
BspQI GCTCTTC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 547
BsrBI CCGCTC 2 cut(s) 460, 656
BssECI CCNNGG 2 cut(s) 446, 696
BssMI GATC 2 cut(s) 346, 487
BssNI GRCGYC 2 cut(s) 518, 548
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 1 cut(s) 743
Bst6I CTCTTC 4 cut(s) 25, 468, 474, 533
BstACI GRCGYC 2 cut(s) 518, 548
BstC8I GCNNGC 2 cut(s) 102, 825
BstDEI CTNAG 5 cut(s) 255, 356, 584, 630, 782
BstDSI CCRYGG 1 cut(s) 446
BstH2I RGCGCY 1 cut(s) 551
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 2 cut(s) 349, 490
BstMBI GATC 2 cut(s) 346, 487
BstNI CCWGG 1 cut(s) 569
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 2 cut(s) 567, 695
BstSLI GKGCMC 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 249, 616
Bsu36I CCTNAGG 1 cut(s) 356
BtgI CCRYGG 1 cut(s) 446
BtsIMutI CAGTG 2 cut(s) 132, 794
Cac8I GCNNGC 2 cut(s) 102, 825
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 1 cut(s) 550
CseI GACGC 1 cut(s) 507
Csp6I GTAC 2 cut(s) 736, 747
CviAII CATG 2 cut(s) 145, 797
CviQI GTAC 2 cut(s) 736, 747
DdeI CTNAG 5 cut(s) 255, 356, 584, 630, 782
DinI GGCGCC 1 cut(s) 549
DpnI GATC 2 cut(s) 348, 489
DpnII GATC 2 cut(s) 346, 487
DriI GACNNNNNGTC 1 cut(s) 289
Eam1104I CTCTTC 4 cut(s) 25, 468, 474, 533
Eam1105I GACNNNNNGTC 1 cut(s) 289
EarI CTCTTC 4 cut(s) 25, 468, 474, 533
EciI GGCGGA 2 cut(s) 470, 545
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
Eco81I CCTNAGG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 567
EcoT38I GRGCYC 1 cut(s) 20
EgeI GGCGCC 1 cut(s) 549
EheI GGCGCC 1 cut(s) 549
FaeI CATG 2 cut(s) 148, 800
FatI CATG 2 cut(s) 144, 796
FauI CCCGC 1 cut(s) 453
FblI GTMKAC 2 cut(s) 293, 793
Fnu4HI GCNGC 5 cut(s) 263, 516, 605, 716, 767
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 5 cut(s) 263, 516, 605, 716, 767
FspBI CTAG 2 cut(s) 270, 843
GlaI GCGC 1 cut(s) 549
GluI GCNGC 5 cut(s) 263, 516, 605, 716, 767
HaeII RGCGCY 1 cut(s) 551
HapII CCGG 4 cut(s) 209, 220, 502, 696
HgaI GACGC 1 cut(s) 507
HhaI GCGC 1 cut(s) 550
Hin1I GRCGYC 2 cut(s) 518, 548
Hin1II CATG 2 cut(s) 148, 800
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HindIII AAGCTT 2 cut(s) 30, 67
HinfI GANTC 2 cut(s) 363, 784
HpaII CCGG 4 cut(s) 209, 220, 502, 696
HphI GGTGA 2 cut(s) 482, 631
Hpy166II GTNNAC 2 cut(s) 294, 794
Hpy188I TCNGA 5 cut(s) 37, 310, 653, 687, 783
Hpy188III TCNNGA 4 cut(s) 209, 220, 355, 502
Hpy8I GTNNAC 2 cut(s) 294, 794
HpyAV CCTTC 4 cut(s) 421, 427, 538, 661
HpyCH4III ACNGT 1 cut(s) 743
HpyCH4V TGCA 3 cut(s) 100, 604, 619
HpyF3I CTNAG 5 cut(s) 255, 356, 584, 630, 782
Hsp92I GRCGYC 2 cut(s) 518, 548
Hsp92II CATG 2 cut(s) 148, 800
HspAI GCGC 1 cut(s) 548
KasI GGCGCC 1 cut(s) 547
Kpn2I TCCGGA 3 cut(s) 208, 219, 501
Kzo9I GATC 2 cut(s) 346, 487
LguI GCTCTTC 1 cut(s) 25
LmnI GCTCC 7 cut(s) 9, 97, 211, 415, 457, 639, 690
Lsp1109I GCAGC 2 cut(s) 249, 616
LweI GCATC 1 cut(s) 606
MaeI CTAG 2 cut(s) 270, 843
MaeIII GTNAC 2 cut(s) 281, 704
MalI GATC 2 cut(s) 348, 489
MbiI CCGCTC 2 cut(s) 460, 656
MboI GATC 2 cut(s) 346, 487
MboII GAAGA 6 cut(s) 3, 12, 168, 485, 491, 550
MhlI GDGCHC 3 cut(s) 20, 334, 695
MluCI AATT 2 cut(s) 185, 431
Mly113I GGCGCC 1 cut(s) 548
MlyI GAGTC 2 cut(s) 357, 793
MmeI TCCRAC 2 cut(s) 437, 654
MroI TCCGGA 3 cut(s) 208, 219, 501
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 1 cut(s) 278
MspI CCGG 4 cut(s) 209, 220, 502, 696
MspR9I CCNGG 2 cut(s) 569, 697
MvaI CCWGG 1 cut(s) 569
NarI GGCGCC 1 cut(s) 548
NciI CCSGG 1 cut(s) 697
NdeII GATC 2 cut(s) 346, 487
NlaIII CATG 2 cut(s) 148, 800
NlaIV GGNNCC 3 cut(s) 46, 549, 566
NmuCI GTSAC 1 cut(s) 281
NspI RCATGY 1 cut(s) 148
PciI ACATGT 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 435
PflMI CCANNNNNTGG 1 cut(s) 447
PkrI GCNGC 5 cut(s) 264, 517, 606, 717, 768
PleI GAGTC 2 cut(s) 357, 792
PluTI GGCGCC 1 cut(s) 551
PpsI GAGTC 2 cut(s) 357, 792
PscI ACATGT 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 3 cut(s) 46, 549, 566
PstNI CAGNNNCTG 1 cut(s) 134
RsaI GTAC 2 cut(s) 737, 748
RsaNI GTAC 2 cut(s) 736, 747
SacI GAGCTC 1 cut(s) 20
SapI GCTCTTC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 5 cut(s) 263, 516, 605, 716, 767
Sau3AI GATC 2 cut(s) 346, 487
SchI GAGTC 2 cut(s) 357, 793
ScrFI CCNGG 2 cut(s) 569, 697
SduI GDGCHC 3 cut(s) 20, 334, 695
SfaNI GCATC 1 cut(s) 606
SfoI GGCGCC 1 cut(s) 549
Sse9I AATT 2 cut(s) 185, 431
SsiI CCGC 8 cut(s) 392, 455, 460, 515, 530, 656, 715, 766
SspDI GGCGCC 1 cut(s) 547
SspMI CTAG 2 cut(s) 270, 843
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 567, 695
TaaI ACNGT 1 cut(s) 743
TaqI TCGA 1 cut(s) 14
TasI AATT 2 cut(s) 185, 431
TauI GCSGC 3 cut(s) 518, 718, 769
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 2 cut(s) 139, 794
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 2 cut(s) 262, 604
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 12, 264, 367
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 2 cut(s) 139, 794
Van91I CCANNNNNTGG 1 cut(s) 447
XapI RAATTY 1 cut(s) 431
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 2 cut(s) 293, 793
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 2 cut(s) 270, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.