Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002160.1

Orthogroup ID

OG0018671

Physical Location & Seq

Genomic Coordinates Reverse (-)

10972 .. 12483

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002160.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

atggcagtggtggcacttggagcggcgttccaaaaattctgccatcaagtcacccatgcagcggcgttccatcaagtcacccaagcgatggagaagaacacaaatatagagctgaaacaggtcctgggtaacttagaggccaagttcaattccttgagagataaaatcatccagcccattcaacaaggccaccagattttcgacaatgatcaaaacgacaagatcgagtccatcgtcgtcgaattgcacaagggagcgaagctcgtcgcgaaagtcaccaagctcggatcatggagctattacttgctcgacgaggacgagtacatctggaggcttttaaatttggattggtacttagaaactctgctgcgtacgactcgggatagggcgttatttgcgagagcatttgatgcttataagaagaaggccggaacggtgccgttgacggccgagaaagaggctgctctggttgtgttccggaggctgtttgcggcgttgatagaggcggaggagaaggagaagagggaggcgcccccgttgtttaggttcctggtttcggatatacgaagcaaaatgtactggttgttgttgcagccatttttgatgcaccagcagcctgagctctttacctcctccttcagagcggagatggagaagggggtggaggtggttcggaggagcagcagcaagtggcggctgctctactacactcctacttttagtgggttagtgcggctggatcaggaattctgccatcaagtcacccatgcagcggcgttccatcaagtcacccaagcgatggagaagaacacaaatatagagctgaaacaggtcctgggtaacttagaggccaagttcaattccttgagagataaaatcatccagcccattcaacaaggccaccagattttcgacaatgatcaaaacgacaagatcgagtccatcgtcgtcgaattgcacaagggagcgaagctcgtcgcgaaagtcaccaagctcggatcatggagctattacttgctcgacgaggacgagtacatctggaggcttttaaatttggattggtacttagaaactctgctgcgtacgactcgggatagggcgttatttgcgagagcatttgatgcttataagaagaaggccggaacggtgccgttgacggccgagaaagaggctgctctggttgtgttccggaggctgtttgcggcgttgatagaggcggaggagaaggagaagagggaggcgcccccgttgtttaggttcctggtttcggatatacgaagcaaaatgtactggttgttgttgcagccatttttgatgcaccagcagcctgagctctttacctcctccttcagagaggagatggagaagggggtggaggtggttcggaggagcagcagcaagtggcggctgctcaactacactcgtacttttagtgggttagtgcggctggatcagtgtctgagtcgttgtctacagaaatgtgcaaacctgcaggctggatttatcatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

503

Amino Acids

58.61

Weight (kDa)

9.12

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018671)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029295 RLG00000029491 RLG00000029777
rosa_multiflora	Rmu_sc0002160.1_g000004 Rmu_sc0008098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314680
rosa_rugosa	Rorug01G0132300.1
rosa_samantha	Rh1AG152800 Rh1BG121900 Rh1CG099200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	417, 1128
Acc36I	ACCTGC	1 cut(s)	1497
AccB1I	GGYRCC	4 cut(s)	436, 529, 1147, 1240
AccB7I	CCANNNNNTGG	2 cut(s)	88, 799
AccBSI	CCGCTC	2 cut(s)	23, 644
AccI	GTMKAC	1 cut(s)	1471
AccII	CGCG	2 cut(s)	269, 980
AccIII	TCCGGA	2 cut(s)	477, 1188
AclWI	GGATC	4 cut(s)	295, 747, 1006, 1458
AcoI	YGGCCR	2 cut(s)	447, 1158
AcsI	RAATTY	4 cut(s)	35, 340, 746, 1051
AcuI	CTGAAG	2 cut(s)	622, 1333
AcyI	GRCGYC	2 cut(s)	530, 1241
AfaI	GTAC	9 cut(s)	323, 353, 373, 578, 1034, 1064, 1084, 1289, 1426
AfiI	CCNNNNNNNGG	6 cut(s)	61, 88, 556, 772, 799, 1267
AgsI	TTSAA	4 cut(s)	148, 182, 859, 893
AjnI	CCWGG	4 cut(s)	123, 549, 834, 1260
Alw21I	GWGCWC	2 cut(s)	624, 1335
AlwI	GGATC	4 cut(s)	295, 747, 1006, 1458
AlwNI	CAGNNNCTG	3 cut(s)	124, 835, 1459
Ama87I	CYCGRG	2 cut(s)	378, 1089
Aor13HI	TCCGGA	2 cut(s)	477, 1188
AoxI	GGCC	8 cut(s)	138, 187, 426, 447, 849, 898, 1137, 1158
ApoI	RAATTY	4 cut(s)	35, 340, 746, 1051
AspLEI	GCGC	2 cut(s)	532, 1243
AspS9I	GGNCC	2 cut(s)	121, 832
AsuHPI	GGTGA	6 cut(s)	43, 70, 268, 754, 781, 979
AvaI	CYCGRG	2 cut(s)	378, 1089
AvaII	GGWCC	2 cut(s)	121, 832
BanI	GGYRCC	4 cut(s)	436, 529, 1147, 1240
BanII	GRGCYC	2 cut(s)	624, 1335
Bbv12I	GWGCWC	2 cut(s)	624, 1335
BceAI	ACGGC	4 cut(s)	424, 462, 1135, 1173
BciT130I	CCWGG	4 cut(s)	125, 551, 836, 1262
BclI	TGATCA	2 cut(s)	208, 919
BfaI	CTAG	1 cut(s)	1510
BfmI	CTRYAG	2 cut(s)	1472, 1490
BfoI	RGCGCY	2 cut(s)	533, 1244
BfuAI	ACCTGC	1 cut(s)	1497
Bme1390I	CCNGG	4 cut(s)	125, 551, 836, 1262
Bme18I	GGWCC	2 cut(s)	121, 832
BmeT110I	CYCGRG	2 cut(s)	378, 1089
BmgT120I	GGNCC	2 cut(s)	121, 832
BmiI	GGNNCC	6 cut(s)	438, 531, 548, 1149, 1242, 1259
BmrFI	CCNGG	4 cut(s)	125, 551, 836, 1262
BmsI	GCATC	4 cut(s)	400, 594, 1111, 1305
BplI	GAGNNNNNCTC	4 cut(s)	246, 278, 957, 989
BpmI	CTGGAG	2 cut(s)	349, 1060
Bpu10I	CCTNAGC	2 cut(s)	618, 1329
BpuEI	CTTGAG	2 cut(s)	175, 886
BsaHI	GRCGYC	2 cut(s)	530, 1241
BsaJI	CCNNGG	2 cut(s)	124, 835
BsaWI	WCCGGW	2 cut(s)	477, 1188
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 88, 556, 772, 799, 1267
Bse1I	ACTGG	2 cut(s)	584, 1295
BseAI	TCCGGA	2 cut(s)	477, 1188
BseBI	CCWGG	4 cut(s)	125, 551, 836, 1262
BseDI	CCNNGG	2 cut(s)	124, 835
BseGI	GGATG	2 cut(s)	168, 879
BseLI	CCNNNNNNNGG	6 cut(s)	61, 88, 556, 772, 799, 1267
BseMII	CTCAG	3 cut(s)	609, 1320, 1451
BseNI	ACTGG	2 cut(s)	584, 1295
BseRI	GAGGAG	7 cut(s)	524, 622, 691, 1235, 1333, 1370, 1402
BseX3I	CGGCCG	2 cut(s)	447, 1158
Bsh1236I	CGCG	2 cut(s)	269, 980
Bsh1285I	CGRYCG	2 cut(s)	450, 1161
BshFI	GGCC	8 cut(s)	140, 189, 428, 449, 851, 900, 1139, 1160
BshNI	GGYRCC	4 cut(s)	436, 529, 1147, 1240
BsiEI	CGRYCG	2 cut(s)	450, 1161
BsiHKAI	GWGCWC	2 cut(s)	624, 1335
BsiHKCI	CYCGRG	2 cut(s)	378, 1089
BsiSI	CCGG	4 cut(s)	429, 478, 1140, 1189
BsiWI	CGTACG	2 cut(s)	371, 1082
BslI	CCNNNNNNNGG	6 cut(s)	61, 88, 556, 772, 799, 1267
BsnI	GGCC	8 cut(s)	140, 189, 428, 449, 851, 900, 1139, 1160
BsoBI	CYCGRG	2 cut(s)	378, 1089
Bsp1286I	GDGCHC	2 cut(s)	624, 1335
Bsp13I	TCCGGA	2 cut(s)	477, 1188
Bsp143I	GATC	8 cut(s)	208, 222, 287, 739, 919, 933, 998, 1450
Bsp68I	TCGCGA	2 cut(s)	269, 980
BspANI	GGCC	8 cut(s)	140, 189, 428, 449, 851, 900, 1139, 1160
BspCNI	CTCAG	3 cut(s)	610, 1321, 1452
BspEI	TCCGGA	2 cut(s)	477, 1188
BspFNI	CGCG	2 cut(s)	269, 980
BspLI	GGNNCC	6 cut(s)	438, 531, 548, 1149, 1242, 1259
BspMAI	CTGCAG	1 cut(s)	1494
BspMI	ACCTGC	1 cut(s)	1497
BspPI	GGATC	4 cut(s)	295, 747, 1006, 1458
BspT107I	GGYRCC	4 cut(s)	436, 529, 1147, 1240
BsrBI	CCGCTC	2 cut(s)	23, 644
BsrI	ACTGG	2 cut(s)	584, 1295
BssECI	CCNNGG	2 cut(s)	124, 835
BssMI	GATC	8 cut(s)	208, 222, 287, 739, 919, 933, 998, 1450
BssNI	GRCGYC	2 cut(s)	530, 1241
Bst2UI	CCWGG	4 cut(s)	125, 551, 836, 1262
Bst4CI	ACNGT	2 cut(s)	436, 1147
Bst6I	CTCTTC	2 cut(s)	515, 1226
BstACI	GRCGYC	2 cut(s)	530, 1241
BstAPI	GCANNNNNTGC	2 cut(s)	410, 1121
BstC8I	GCNNGC	1 cut(s)	1494
BstDEI	CTNAG	7 cut(s)	133, 355, 618, 844, 1066, 1329, 1460
BstF5I	GGATG	2 cut(s)	168, 879
BstFNI	CGCG	2 cut(s)	269, 980
BstH2I	RGCGCY	2 cut(s)	533, 1244
BstHHI	GCGC	2 cut(s)	532, 1243
BstKTI	GATC	8 cut(s)	211, 225, 290, 742, 922, 936, 1001, 1453
BstMBI	GATC	8 cut(s)	208, 222, 287, 739, 919, 933, 998, 1450
BstMCI	CGRYCG	2 cut(s)	450, 1161
BstNI	CCWGG	4 cut(s)	125, 551, 836, 1262
BstSCI	CCNGG	4 cut(s)	123, 549, 834, 1260
BstSFI	CTRYAG	2 cut(s)	1472, 1490
BstUI	CGCG	2 cut(s)	269, 980
BstZI	CGGCCG	2 cut(s)	447, 1158
BsuRI	GGCC	8 cut(s)	140, 189, 428, 449, 851, 900, 1139, 1160
BtgZI	GCGATG	2 cut(s)	101, 812
BtsCI	GGATG	2 cut(s)	168, 879
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 1460
BtuMI	TCGCGA	2 cut(s)	269, 980
BveI	ACCTGC	1 cut(s)	1497
Cac8I	GCNNGC	1 cut(s)	1494
CaiI	CAGNNNCTG	3 cut(s)	124, 835, 1459
CfoI	GCGC	2 cut(s)	532, 1243
Cfr13I	GGNCC	2 cut(s)	121, 832
Csp6I	GTAC	9 cut(s)	322, 352, 372, 577, 1033, 1063, 1083, 1288, 1425
CviAII	CATG	4 cut(s)	56, 291, 767, 1002
CviQI	GTAC	9 cut(s)	322, 352, 372, 577, 1033, 1063, 1083, 1288, 1425
DdeI	CTNAG	7 cut(s)	133, 355, 618, 844, 1066, 1329, 1460
DinI	GGCGCC	2 cut(s)	531, 1242
DpnI	GATC	8 cut(s)	210, 224, 289, 741, 921, 935, 1000, 1452
DpnII	GATC	8 cut(s)	208, 222, 287, 739, 919, 933, 998, 1450
DraI	TTTAAA	2 cut(s)	339, 1050
EaeI	YGGCCR	2 cut(s)	447, 1158
EagI	CGGCCG	2 cut(s)	447, 1158
Eam1104I	CTCTTC	2 cut(s)	515, 1226
EarI	CTCTTC	2 cut(s)	515, 1226
EciI	GGCGGA	2 cut(s)	521, 1232
Ecl136II	GAGCTC	2 cut(s)	622, 1333
EclXI	CGGCCG	2 cut(s)	447, 1158
Eco24I	GRGCYC	2 cut(s)	624, 1335
Eco47I	GGWCC	2 cut(s)	121, 832
Eco52I	CGGCCG	2 cut(s)	447, 1158
Eco53kI	GAGCTC	2 cut(s)	622, 1333
Eco57I	CTGAAG	2 cut(s)	622, 1333
Eco88I	CYCGRG	2 cut(s)	378, 1089
EcoICRI	GAGCTC	2 cut(s)	622, 1333
EcoO109I	RGGNCCY	2 cut(s)	121, 832
EcoRI	GAATTC	1 cut(s)	746
EcoRII	CCWGG	4 cut(s)	123, 549, 834, 1260
EcoT38I	GRGCYC	2 cut(s)	624, 1335
EgeI	GGCGCC	2 cut(s)	531, 1242
EheI	GGCGCC	2 cut(s)	531, 1242
FaeI	CATG	4 cut(s)	59, 294, 770, 1005
FatI	CATG	4 cut(s)	55, 290, 766, 1001
FbaI	TGATCA	2 cut(s)	208, 919
FblI	GTMKAC	1 cut(s)	1471
FokI	GGATG	2 cut(s)	155, 866
FriOI	GRGCYC	2 cut(s)	624, 1335
FspBI	CTAG	1 cut(s)	1510
GlaI	GCGC	2 cut(s)	531, 1242
GsuI	CTGGAG	2 cut(s)	349, 1060
HaeII	RGCGCY	2 cut(s)	533, 1244
HaeIII	GGCC	8 cut(s)	140, 189, 428, 449, 851, 900, 1139, 1160
HapII	CCGG	4 cut(s)	429, 478, 1140, 1189
HhaI	GCGC	2 cut(s)	532, 1243
Hin1I	GRCGYC	2 cut(s)	530, 1241
Hin1II	CATG	4 cut(s)	59, 294, 770, 1005
Hin6I	GCGC	2 cut(s)	530, 1241
HinP1I	GCGC	2 cut(s)	530, 1241
HincII	GTYRAC	2 cut(s)	444, 1155
HindII	GTYRAC	2 cut(s)	444, 1155
HinfI	GANTC	5 cut(s)	227, 376, 938, 1087, 1462
HpaII	CCGG	4 cut(s)	429, 478, 1140, 1189
HphI	GGTGA	6 cut(s)	43, 70, 268, 754, 781, 979
Hpy166II	GTNNAC	3 cut(s)	444, 1155, 1472
Hpy188I	TCNGA	9 cut(s)	287, 559, 641, 675, 998, 1270, 1352, 1386, 1461
Hpy188III	TCNNGA	9 cut(s)	268, 328, 380, 478, 743, 979, 1039, 1091, 1189
Hpy8I	GTNNAC	3 cut(s)	444, 1155, 1472
Hpy99I	CGWCG	8 cut(s)	239, 242, 269, 314, 950, 953, 980, 1025
HpyAV	CCTTC	8 cut(s)	418, 508, 646, 649, 1129, 1219, 1357, 1360
HpyCH4III	ACNGT	2 cut(s)	436, 1147
HpyF3I	CTNAG	7 cut(s)	133, 355, 618, 844, 1066, 1329, 1460
Hsp92I	GRCGYC	2 cut(s)	530, 1241
Hsp92II	CATG	4 cut(s)	59, 294, 770, 1005
HspAI	GCGC	2 cut(s)	530, 1241
KasI	GGCGCC	2 cut(s)	529, 1240
Kpn2I	TCCGGA	2 cut(s)	477, 1188
Ksp22I	TGATCA	2 cut(s)	208, 919
Kzo9I	GATC	8 cut(s)	208, 222, 287, 739, 919, 933, 998, 1450
LmnI	GCTCC	7 cut(s)	20, 254, 294, 678, 965, 1005, 1389
LweI	GCATC	4 cut(s)	400, 594, 1111, 1305
MaeI	CTAG	1 cut(s)	1510
MaeIII	GTNAC	8 cut(s)	49, 76, 128, 274, 760, 787, 839, 985
MalI	GATC	8 cut(s)	210, 224, 289, 741, 921, 935, 1000, 1452
MbiI	CCGCTC	2 cut(s)	23, 644
MboI	GATC	8 cut(s)	208, 222, 287, 739, 919, 933, 998, 1450
MboII	GAAGA	6 cut(s)	106, 433, 532, 817, 1144, 1243
MhlI	GDGCHC	2 cut(s)	624, 1335
MluCI	AATT	8 cut(s)	35, 148, 242, 340, 746, 859, 953, 1051
Mly113I	GGCGCC	2 cut(s)	530, 1241
MlyI	GAGTC	5 cut(s)	236, 370, 947, 1081, 1471
MroI	TCCGGA	2 cut(s)	477, 1188
MseI	TTAA	2 cut(s)	338, 1049
MspA1I	CMGCKG	2 cut(s)	62, 773
MspI	CCGG	4 cut(s)	429, 478, 1140, 1189
MspR9I	CCNGG	4 cut(s)	125, 551, 836, 1262
MvaI	CCWGG	4 cut(s)	125, 551, 836, 1262
MvnI	CGCG	2 cut(s)	269, 980
NarI	GGCGCC	2 cut(s)	530, 1241
NdeII	GATC	8 cut(s)	208, 222, 287, 739, 919, 933, 998, 1450
NlaIII	CATG	4 cut(s)	59, 294, 770, 1005
NlaIV	GGNNCC	6 cut(s)	438, 531, 548, 1149, 1242, 1259
NmeAIII	GCCGAG	2 cut(s)	475, 1186
NmuCI	GTSAC	6 cut(s)	49, 76, 274, 760, 787, 985
NruI	TCGCGA	2 cut(s)	269, 980
PcsI	WCGNNNNNNNCGW	6 cut(s)	222, 231, 315, 933, 942, 1026
Pfl23II	CGTACG	2 cut(s)	371, 1082
PflMI	CCANNNNNTGG	2 cut(s)	88, 799
PleI	GAGTC	5 cut(s)	235, 370, 946, 1081, 1470
PluTI	GGCGCC	2 cut(s)	533, 1244
PpsI	GAGTC	5 cut(s)	235, 370, 946, 1081, 1470
PpuMI	RGGWCCY	2 cut(s)	121, 832
PsiI	TTATAA	2 cut(s)	417, 1128
Psp124BI	GAGCTC	2 cut(s)	624, 1335
Psp5II	RGGWCCY	2 cut(s)	121, 832
Psp6I	CCWGG	4 cut(s)	123, 549, 834, 1260
PspGI	CCWGG	4 cut(s)	123, 549, 834, 1260
PspLI	CGTACG	2 cut(s)	371, 1082
PspN4I	GGNNCC	6 cut(s)	438, 531, 548, 1149, 1242, 1259
PspPI	GGNCC	2 cut(s)	121, 832
PspPPI	RGGWCCY	2 cut(s)	121, 832
PstI	CTGCAG	1 cut(s)	1494
PstNI	CAGNNNCTG	3 cut(s)	124, 835, 1459
RruI	TCGCGA	2 cut(s)	269, 980
RsaI	GTAC	9 cut(s)	323, 353, 373, 578, 1034, 1064, 1084, 1289, 1426
RsaNI	GTAC	9 cut(s)	322, 352, 372, 577, 1033, 1063, 1083, 1288, 1425
SacI	GAGCTC	2 cut(s)	624, 1335
SaqAI	TTAA	2 cut(s)	338, 1049
Sau3AI	GATC	8 cut(s)	208, 222, 287, 739, 919, 933, 998, 1450
Sau96I	GGNCC	2 cut(s)	121, 832
SbfI	CCTGCAGG	1 cut(s)	1494
SchI	GAGTC	5 cut(s)	236, 370, 947, 1081, 1471
ScrFI	CCNGG	4 cut(s)	125, 551, 836, 1262
SdaI	CCTGCAGG	1 cut(s)	1494
SduI	GDGCHC	2 cut(s)	624, 1335
SfaNI	GCATC	4 cut(s)	400, 594, 1111, 1305
SfcI	CTRYAG	2 cut(s)	1472, 1490
SfoI	GGCGCC	2 cut(s)	531, 1242
SinI	GGWCC	2 cut(s)	121, 832
SmlI	CTYRAG	2 cut(s)	154, 865
SmoI	CTYRAG	2 cut(s)	154, 865
Sse8387I	CCTGCAGG	1 cut(s)	1494
Sse9I	AATT	8 cut(s)	35, 148, 242, 340, 746, 859, 953, 1051
SspDI	GGCGCC	2 cut(s)	529, 1240
SspMI	CTAG	1 cut(s)	1510
SstI	GAGCTC	2 cut(s)	624, 1335
StyD4I	CCNGG	4 cut(s)	123, 549, 834, 1260
TaaI	ACNGT	2 cut(s)	436, 1147
TaqI	TCGA	8 cut(s)	201, 225, 240, 309, 912, 936, 951, 1020
TasI	AATT	8 cut(s)	35, 148, 242, 340, 746, 859, 953, 1051
TatI	WGTACW	4 cut(s)	321, 576, 1032, 1287
TauI	GCSGC	9 cut(s)	26, 65, 494, 697, 736, 776, 1205, 1408, 1447
Tru1I	TTAA	2 cut(s)	338, 1049
Tru9I	TTAA	2 cut(s)	338, 1049
TscAI	CASTG	2 cut(s)	12, 1460
TseFI	GTSAC	6 cut(s)	49, 76, 274, 760, 787, 985
Tsp45I	GTSAC	6 cut(s)	49, 76, 274, 760, 787, 985
TspRI	CASTG	2 cut(s)	12, 1460
Van91I	CCANNNNNTGG	2 cut(s)	88, 799
VpaK11BI	GGWCC	2 cut(s)	121, 832
XapI	RAATTY	4 cut(s)	35, 340, 746, 1051
XmiI	GTMKAC	1 cut(s)	1471
XspI	CTAG	1 cut(s)	1510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.