RLG00000029455

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0019487
Physical Location & Seq
Forward (+)
38976926 .. 38977548
623 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029455

Sequence Viewer

Length: 528 bp
ATGCCGAGTTCACGACCATCTTCCCTGGACGAGGAATGGACGCTGATTGATGAGGCGGCCGGTTGGGGATGGAGATCTCGGCGTCATGGAGATCTCCGTGATGCAGGAGATCGCTGCTCCCTTCTCCATCGTGTGGTCGGTCGGTCCAGTCCTATCAACCCTTATTTCTCCAACTCTTCCCATCTCGACGAAGACGACGACGATGATGAAGAAAAAGAGAGGAGGCGACGAAAAGCTTTGAGGAGAGACATTGTGGAAATAGAGTCGTTTCGTTCTAAAGAGGAGGCCGATGTGGGTTTAGATAAGATGATCCCCAATCAAAATTTGATCCAAGCGAAGGTTGATAGTTACCAATATATTGTTGATCAGAATGGGGCAGCAATGTGTGTGTCGGGTGATAGTGGGGTTAGAGTGGGTGGGAAGAGGAGGAGGAATGATGACCACAGCCTGTCTTTTTTTTTTTTTGGTCAGACCATAGGCCACAATGCCACACTGCCACAGGCTACCGAGAAAATATGCAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.95

Weight (kDa)

5.97

Isoelectric Point (pI)

70.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019487)

Species Orthologous Gene IDs
rosa_laevigata RLG00000028079 RLG00000029455
rosa_multiflora Rmu_sc0000918.1_g000003
rosa_samantha Rh1AG173400 Rh3DG081800 Rh4DG382300 Rh6AG370100 Rh7CG214700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 133
AciI CCGC 1 cut(s) 56
AclWI GGATC 2 cut(s) 304, 322
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 82
AfiI CCNNNNNNNGG 3 cut(s) 31, 133, 337
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 2 cut(s) 304, 322
AoxI GGCC 3 cut(s) 57, 285, 478
ApeKI GCWGC 2 cut(s) 114, 377
ApoI RAATTY 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 407
AvaII GGWCC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 101, 389
BccI CCATC 4 cut(s) 25, 63, 135, 189
BciT130I CCWGG 1 cut(s) 26
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 240
BglII AGATCT 2 cut(s) 74, 91
BisI GCNGC 3 cut(s) 57, 115, 378
BlsI GCNGC 3 cut(s) 58, 116, 379
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 133, 337
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 387
Bse8I GATNNNNATC 1 cut(s) 73
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 74
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 31, 133, 337
BseMI GCAATG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 5 cut(s) 235, 256, 296, 439, 442
BseX3I CGGCCG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 101, 389
Bsh1285I CGRYCG 2 cut(s) 60, 142
BshFI GGCC 3 cut(s) 59, 287, 480
BsiEI CGRYCG 2 cut(s) 60, 142
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 3 cut(s) 31, 133, 337
BsmAI GTCTC 1 cut(s) 240
BsnI GGCC 3 cut(s) 59, 287, 480
Bsp143I GATC 6 cut(s) 74, 91, 109, 309, 327, 364
BspACI CCGC 1 cut(s) 56
BspANI GGCC 3 cut(s) 59, 287, 480
BspPI GGATC 2 cut(s) 304, 322
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 147
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 6 cut(s) 74, 91, 109, 309, 327, 364
BssNI GRCGYC 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 26
Bst6I CTCTTC 2 cut(s) 181, 416
BstACI GRCGYC 1 cut(s) 82
BstENI CCTNNNNNAGG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 74
BstKTI GATC 6 cut(s) 77, 94, 112, 312, 330, 367
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 6 cut(s) 74, 91, 109, 309, 327, 364
BstMCI CGRYCG 2 cut(s) 60, 142
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 101, 389
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 2 cut(s) 74, 91
BstYI RGATCY 2 cut(s) 74, 91
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 3 cut(s) 59, 287, 480
BtsCI GGATG 1 cut(s) 74
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 1 cut(s) 491
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 144
CseI GACGC 2 cut(s) 49, 71
CviAII CATG 1 cut(s) 86
CviJI RGCY 6 cut(s) 59, 236, 287, 447, 480, 503
CviKI_1 RGCY 6 cut(s) 59, 236, 287, 447, 480, 503
DpnI GATC 6 cut(s) 76, 93, 111, 311, 329, 366
DpnII GATC 6 cut(s) 74, 91, 109, 309, 327, 364
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 2 cut(s) 181, 416
EarI CTCTTC 2 cut(s) 181, 416
EclXI CGGCCG 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 144
Eco52I CGGCCG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 89
FaiI YATR 4 cut(s) 87, 357, 476, 517
FatI CATG 1 cut(s) 85
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 3 cut(s) 57, 115, 378
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 3 cut(s) 57, 115, 378
GluI GCNGC 3 cut(s) 57, 115, 378
HaeIII GGCC 3 cut(s) 59, 287, 480
HapII CCGG 1 cut(s) 60
HgaI GACGC 2 cut(s) 49, 71
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 2 cut(s) 369, 471
Hpy188III TCNNGA 2 cut(s) 12, 185
Hpy8I GTNNAC 1 cut(s) 11
Hpy99I CGWCG 4 cut(s) 191, 200, 203, 231
HpyAV CCTTC 2 cut(s) 131, 331
HpyCH4V TGCA 2 cut(s) 104, 519
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 6 cut(s) 74, 91, 109, 309, 327, 364
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 7 cut(s) 11, 38, 73, 90, 160, 461, 485
Lsp1109I GCAGC 2 cut(s) 101, 389
LweI GCATC 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 347
MalI GATC 6 cut(s) 76, 93, 111, 311, 329, 366
MboI GATC 6 cut(s) 74, 91, 109, 309, 327, 364
MboII GAAGA 5 cut(s) 12, 168, 203, 221, 433
MflI RGATCY 2 cut(s) 74, 91
MluCI AATT 1 cut(s) 322
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 195
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
NdeII GATC 6 cut(s) 74, 91, 109, 309, 327, 364
NlaIII CATG 1 cut(s) 89
NmeAIII GCCGAG 2 cut(s) 30, 58
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 195
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 3 cut(s) 58, 116, 379
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspPI GGNCC 1 cut(s) 144
PsuI RGATCY 2 cut(s) 74, 91
SatI GCNGC 3 cut(s) 57, 115, 378
Sau3AI GATC 6 cut(s) 74, 91, 109, 309, 327, 364
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 26
SetI ASST 2 cut(s) 238, 342
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 1 cut(s) 144
Sse9I AATT 1 cut(s) 322
SsiI CCGC 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 24
TaqI TCGA 1 cut(s) 186
TaqII GACCGA 2 cut(s) 128, 132
TasI AATT 1 cut(s) 322
TauI GCSGC 1 cut(s) 59
TscAI CASTG 1 cut(s) 498
TseI GCWGC 2 cut(s) 114, 377
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 498
Van91I CCANNNNNTGG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 144
XagI CCTNNNNNAGG 1 cut(s) 29
XapI RAATTY 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.