Rh6AG370100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0019487
Physical Location & Seq
Forward (+)
56798750 .. 56798953
204 bp
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UTR
Exon/CDS
Intron
Rh6AG370100.1

Sequence Viewer

Length: 204 bp
ATGAAGATGCCGAGTCCACCAACCACCATCGGTCTCGGAGATGCGAGTTCACCATCGTCTGCGATGGACGACAAATGGACGTTAATCGATGAGGCGGCCGGTTGGGGATGGAGATCTCGGCGTCATGGAGATCTCCGTGATGCAGGAAATCGCTGCTCCCTTCTAGACGAAGACAACGACGATGATGAAGAAGAGAGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.49

Weight (kDa)

4.42

Isoelectric Point (pI)

89.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019487)

Species Orthologous Gene IDs
rosa_laevigata RLG00000028079 RLG00000029455
rosa_multiflora Rmu_sc0000918.1_g000003
rosa_samantha Rh1AG173400 Rh3DG081800 Rh4DG382300 Rh6AG370100 Rh7CG214700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 95, 199
AcoI YGGCCR 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 38
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 140
BccI CCATC 4 cut(s) 35, 58, 61, 102
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 164
BglII AGATCT 2 cut(s) 113, 130
BisI GCNGC 2 cut(s) 96, 154
BlsI GCNGC 2 cut(s) 97, 155
BmsI GCATC 2 cut(s) 31, 130
BpiI GAAGAC 1 cut(s) 177
Bsa29I ATCGAT 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 38
Bse118I RCCGGY 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 112
BseCI ATCGAT 1 cut(s) 87
BseGI GGATG 1 cut(s) 113
BseJI GATNNNNATC 1 cut(s) 112
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 140
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 98
BshVI ATCGAT 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 38
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 38
Bsp143I GATC 2 cut(s) 113, 130
BspACI CCGC 2 cut(s) 95, 199
BspANI GGCC 1 cut(s) 98
BspDI ATCGAT 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssMI GATC 2 cut(s) 113, 130
BssNI GRCGYC 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 121
BstF5I GGATG 1 cut(s) 113
BstKTI GATC 2 cut(s) 116, 133
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 2 cut(s) 113, 130
BstMCI CGRYCG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 113, 130
BstYI RGATCY 2 cut(s) 113, 130
BstZI CGGCCG 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 1 cut(s) 98
BsuTUI ATCGAT 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 87
CseI GACGC 1 cut(s) 110
CviAII CATG 1 cut(s) 125
CviJI RGCY 1 cut(s) 98
CviKI_1 RGCY 1 cut(s) 98
DpnI GATC 2 cut(s) 115, 132
DpnII GATC 2 cut(s) 113, 130
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EclXI CGGCCG 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 38
Eco52I CGGCCG 1 cut(s) 96
FaeI CATG 1 cut(s) 128
FaiI YATR 1 cut(s) 126
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 96, 154
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 2 cut(s) 96, 154
FspBI CTAG 1 cut(s) 164
GluI GCNGC 2 cut(s) 96, 154
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 99
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 1 cut(s) 128
HinfI GANTC 1 cut(s) 13
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 17, 50
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 17, 50
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 2 cut(s) 113, 130
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 2 cut(s) 112, 129
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 2 cut(s) 31, 130
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 80
MalI GATC 2 cut(s) 115, 132
MboI GATC 2 cut(s) 113, 130
MboII GAAGA 4 cut(s) 16, 182, 200, 203
MflI RGATCY 2 cut(s) 113, 130
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 2 cut(s) 85, 189
MseI TTAA 1 cut(s) 83
MspI CCGG 1 cut(s) 99
NdeII GATC 2 cut(s) 113, 130
NlaIII CATG 1 cut(s) 128
NmeAIII GCCGAG 2 cut(s) 36, 97
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PkrI GCNGC 2 cut(s) 97, 155
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PsuI RGATCY 2 cut(s) 113, 130
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 2 cut(s) 96, 154
Sau3AI GATC 2 cut(s) 113, 130
SchI GAGTC 1 cut(s) 22
SetI ASST 1 cut(s) 83
SfaNI GCATC 2 cut(s) 31, 130
SgeI CNNG 9 cut(s) 24, 47, 57, 111, 129, 137, 149, 156, 176
SsiI CCGC 2 cut(s) 95, 199
SspMI CTAG 1 cut(s) 164
TaiI ACGT 1 cut(s) 83
TaqI TCGA 1 cut(s) 87
TaqII GACCGA 1 cut(s) 20
TauI GCSGC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 2 cut(s) 17, 201
TspGWI ACGGA 1 cut(s) 125
XbaI TCTAGA 1 cut(s) 163
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.