Rh4DG382300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0019487
Physical Location & Seq
Reverse (-)
59982573 .. 59983670
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG382300.1

Sequence Viewer

Length: 342 bp
ATGCCGAGTCCACCAACCACCATCGGTCTCGAAGATGTGAGTTCACCACCATCTGCGCCGGACGACGAATGGACGTTGATCGATAAGGCGGTCGATTGGGGATGGAGATCTCGGCGTCATGGAGATCTCCGTGATGCAGGAAATCGCTGCTCCCTTCTGGACGAAGACGACAACGATGATGAAGAAGAGAGGCGGCGACGAAAAGCTTCAGAGGTCTCACCGGCGCTGCCTTTGTCGGTGATGTCGTTCTTATCAGCTATTCCGGCGCCTAGGAACTCGGCGACTGGGTCTGTTCGACGGCGTCGGTGTGGATCCGGAGACGTGGGTGATCCGGTATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.47

Weight (kDa)

4.83

Isoelectric Point (pI)

95.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019487)

Species Orthologous Gene IDs
rosa_laevigata RLG00000028079 RLG00000029455
rosa_multiflora Rmu_sc0000918.1_g000003
rosa_samantha Rh1AG173400 Rh3DG081800 Rh4DG382300 Rh6AG370100 Rh7CG214700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AccIII TCCGGA 1 cut(s) 314
AciI CCGC 2 cut(s) 89, 193
AclWI GGATC 3 cut(s) 306, 319, 323
AcuI CTGAAG 1 cut(s) 192
AcyI GRCGYC 3 cut(s) 115, 266, 301
AjiI CACGTC 1 cut(s) 322
AluBI AGCT 2 cut(s) 206, 257
AluI AGCT 2 cut(s) 206, 257
Alw26I GTCTC 3 cut(s) 32, 220, 312
AlwI GGATC 3 cut(s) 306, 319, 323
Aor13HI TCCGGA 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 147, 226
Asp700I GAANNNNTTC 1 cut(s) 205
AspA2I CCTAGG 1 cut(s) 269
AspLEI GCGC 3 cut(s) 58, 226, 268
AsuHPI GGTGA 4 cut(s) 36, 210, 250, 338
AvrII CCTAGG 1 cut(s) 269
BamHI GGATCC 1 cut(s) 311
BanI GGYRCC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 134, 213
BccI CCATC 3 cut(s) 29, 58, 96
BceAI ACGGC 1 cut(s) 314
BcoDI GTCTC 3 cut(s) 32, 220, 312
BfaI CTAG 1 cut(s) 270
BfoI RGCGCY 2 cut(s) 227, 269
BglII AGATCT 2 cut(s) 107, 124
BisI GCNGC 3 cut(s) 148, 194, 227
BlnI CCTAGG 1 cut(s) 269
BlsI GCNGC 3 cut(s) 149, 195, 228
BmgBI CACGTC 1 cut(s) 322
BmiI GGNNCC 2 cut(s) 267, 313
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 171
Bsa29I ATCGAT 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 106
BsaHI GRCGYC 3 cut(s) 115, 266, 301
BsaI GGTCTC 2 cut(s) 32, 220
BsaJI CCNNGG 1 cut(s) 269
BsaWI WCCGGW 2 cut(s) 314, 331
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 289
Bse8I GATNNNNATC 1 cut(s) 106
BseAI TCCGGA 1 cut(s) 314
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 269
BseGI GGATG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 106
BseNI ACTGG 1 cut(s) 289
BseXI GCAGC 2 cut(s) 134, 213
Bsh1285I CGRYCG 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 265
BshVI ATCGAT 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 5 cut(s) 59, 221, 263, 315, 332
BsmAI GTCTC 3 cut(s) 32, 220, 312
BsmBI CGTCTC 1 cut(s) 312
Bso31I GGTCTC 2 cut(s) 32, 220
Bsp13I TCCGGA 1 cut(s) 314
Bsp143I GATC 5 cut(s) 78, 107, 124, 311, 328
BspACI CCGC 2 cut(s) 89, 193
BspDI ATCGAT 1 cut(s) 81
BspEI TCCGGA 1 cut(s) 314
BspLI GGNNCC 2 cut(s) 267, 313
BspPI GGATC 3 cut(s) 306, 319, 323
BspT107I GGYRCC 1 cut(s) 265
BspTNI GGTCTC 2 cut(s) 32, 220
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 1 cut(s) 289
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 269
BssMI GATC 5 cut(s) 78, 107, 124, 311, 328
BssNI GRCGYC 3 cut(s) 115, 266, 301
BssT1I CCWWGG 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 3 cut(s) 115, 266, 301
BstF5I GGATG 1 cut(s) 107
BstH2I RGCGCY 2 cut(s) 227, 269
BstHHI GCGC 3 cut(s) 58, 226, 268
BstKTI GATC 5 cut(s) 81, 110, 127, 314, 331
BstMAI GTCTC 3 cut(s) 32, 220, 312
BstMBI GATC 5 cut(s) 78, 107, 124, 311, 328
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstV1I GCAGC 2 cut(s) 134, 213
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 3 cut(s) 107, 124, 311
BstYI RGATCY 3 cut(s) 107, 124, 311
Bsu15I ATCGAT 1 cut(s) 81
BsuTUI ATCGAT 1 cut(s) 81
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 107
CfoI GCGC 3 cut(s) 58, 226, 268
Cfr10I RCCGGY 1 cut(s) 220
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 2 cut(s) 104, 290
CviAII CATG 1 cut(s) 119
CviJI RGCY 2 cut(s) 206, 257
CviKI_1 RGCY 2 cut(s) 206, 257
DinI GGCGCC 1 cut(s) 267
DpnI GATC 5 cut(s) 80, 109, 126, 313, 330
DpnII GATC 5 cut(s) 78, 107, 124, 311, 328
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 269
Eco31I GGTCTC 2 cut(s) 32, 220
Eco57I CTGAAG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 269
EgeI GGCGCC 1 cut(s) 267
EheI GGCGCC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 269
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 1 cut(s) 122
FaiI YATR 2 cut(s) 120, 337
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 148, 194, 227
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 3 cut(s) 148, 194, 227
FspBI CTAG 1 cut(s) 270
GlaI GCGC 3 cut(s) 57, 225, 267
GluI GCNGC 3 cut(s) 148, 194, 227
HaeII RGCGCY 2 cut(s) 227, 269
HapII CCGG 5 cut(s) 59, 221, 263, 315, 332
HgaI GACGC 2 cut(s) 104, 290
HhaI GCGC 3 cut(s) 58, 226, 268
Hin1I GRCGYC 3 cut(s) 115, 266, 301
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 3 cut(s) 56, 224, 266
HinP1I GCGC 3 cut(s) 56, 224, 266
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 1 cut(s) 7
HpaII CCGG 5 cut(s) 59, 221, 263, 315, 332
HphI GGTGA 4 cut(s) 36, 210, 250, 338
Hpy166II GTNNAC 2 cut(s) 11, 44
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 3 cut(s) 29, 158, 315
Hpy8I GTNNAC 2 cut(s) 11, 44
Hpy99I CGWCG 4 cut(s) 68, 201, 300, 306
HpyAV CCTTC 1 cut(s) 164
HpyCH4IV ACGT 2 cut(s) 74, 321
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpySE526I ACGT 2 cut(s) 74, 321
Hsp92I GRCGYC 3 cut(s) 115, 266, 301
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 3 cut(s) 56, 224, 266
KasI GGCGCC 1 cut(s) 265
Kpn2I TCCGGA 1 cut(s) 314
Kzo9I GATC 5 cut(s) 78, 107, 124, 311, 328
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 7 cut(s) 72, 123, 143, 234, 270, 276, 328
Lsp1109I GCAGC 2 cut(s) 134, 213
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 270
MaeII ACGT 2 cut(s) 74, 321
MalI GATC 5 cut(s) 80, 109, 126, 313, 330
MboI GATC 5 cut(s) 78, 107, 124, 311, 328
MboII GAAGA 4 cut(s) 44, 176, 194, 197
MflI RGATCY 3 cut(s) 107, 124, 311
Mly113I GGCGCC 1 cut(s) 266
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 2 cut(s) 183, 205
MroI TCCGGA 1 cut(s) 314
MroXI GAANNNNTTC 1 cut(s) 205
MspI CCGG 5 cut(s) 59, 221, 263, 315, 332
MwoI GCNNNNNNNGC 1 cut(s) 263
NarI GGCGCC 1 cut(s) 266
NdeII GATC 5 cut(s) 78, 107, 124, 311, 328
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 2 cut(s) 267, 313
NmeAIII GCCGAG 3 cut(s) 30, 91, 257
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 205
PflFI GACNNNGTC 2 cut(s) 286, 300
PkrI GCNGC 3 cut(s) 149, 195, 228
PleI GAGTC 1 cut(s) 15
PluTI GGCGCC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 267, 313
PsuI RGATCY 3 cut(s) 107, 124, 311
PsyI GACNNNGTC 2 cut(s) 286, 300
SatI GCNGC 3 cut(s) 148, 194, 227
Sau3AI GATC 5 cut(s) 78, 107, 124, 311, 328
SchI GAGTC 1 cut(s) 16
SetI ASST 5 cut(s) 77, 208, 216, 259, 324
SfaNI GCATC 1 cut(s) 124
SfoI GGCGCC 1 cut(s) 267
SgrAI CRCCGGYG 1 cut(s) 220
SsiI CCGC 2 cut(s) 89, 193
SspDI GGCGCC 1 cut(s) 265
SspMI CTAG 1 cut(s) 270
StyI CCWWGG 1 cut(s) 269
TaiI ACGT 2 cut(s) 77, 324
TaqI TCGA 4 cut(s) 30, 81, 93, 295
TaqII GACCGA 1 cut(s) 14
TauI GCSGC 1 cut(s) 196
TseI GCWGC 2 cut(s) 147, 226
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 119
Tth111I GACNNNGTC 2 cut(s) 286, 300
XmaJI CCTAGG 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 205
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.