Rmu_sc0000918.1_g000003

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000918.1
OG0019487
Physical Location & Seq
Forward (+)
2492 .. 4312
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000918.1_g000003.1.cds

Sequence Viewer

Length: 576 bp
atgccgagtccaccaaccaccatcggtctcgaagatgcgagttcaccaccgtctgcgccggacgacgaagggacgttaatcgatgaggcggctggttggggatggagatctcggcgtcatggagatctccgtgatgcaggaaatcgctgctcccttctagacgaagacaacgacgatgatgaagaagagaggcggaactcaggtgtgagttccggtttagtttccgggaacggtcgtcagattccggtcacggtcaccggattcgggtcatcgttcgccggattccagtcaccggtcgccggcgccctgccactggtcaccagaggccggcaagcccgtaaccataggaagacgctgaagctcaagatgggcttactgggtcttgttggatttgcgctccaatgctttggtgttcttgcgtggcctctctttgctctcgtctatcctctgtattcttccattagagcaatcgagacaaattccattacagatactcacaagataaatacttattgggttgtcttctcattgatcttgctatttgagcatgcttttatgaagcttaatgtggactga

Protein Analysis

191

Amino Acids

20.8

Weight (kDa)

5.56

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019487)

Species Orthologous Gene IDs
rosa_laevigata RLG00000028079 RLG00000029455
rosa_multiflora Rmu_sc0000918.1_g000003
rosa_samantha Rh1AG173400 Rh3DG081800 Rh4DG382300 Rh6AG370100 Rh7CG214700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AciI CCGC 2 cut(s) 89, 193
AcsI RAATTY 1 cut(s) 478
AcuI CTGAAG 1 cut(s) 377
AcyI GRCGYC 2 cut(s) 115, 303
AfiI CCNNNNNNNGG 5 cut(s) 264, 292, 299, 313, 327
AgeI ACCGGT 1 cut(s) 292
AluBI AGCT 2 cut(s) 361, 562
AluI AGCT 2 cut(s) 361, 562
Alw26I GTCTC 2 cut(s) 32, 467
AoxI GGCC 2 cut(s) 325, 422
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 478
AsiGI ACCGGT 1 cut(s) 292
AspLEI GCGC 3 cut(s) 58, 305, 397
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 4 cut(s) 36, 247, 282, 310
BanI GGYRCC 1 cut(s) 302
BbsI GAAGAC 3 cut(s) 171, 356, 514
BbvI GCAGC 1 cut(s) 134
BccI CCATC 3 cut(s) 29, 96, 361
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 32, 467
BfaI CTAG 1 cut(s) 158
BfoI RGCGCY 1 cut(s) 306
BglII AGATCT 2 cut(s) 107, 124
BisI GCNGC 2 cut(s) 90, 148
BlsI GCNGC 2 cut(s) 91, 149
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 386
BmsI GCATC 2 cut(s) 25, 124
BmuI ACTGGG 1 cut(s) 386
BpiI GAAGAC 3 cut(s) 171, 356, 514
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 226
Bsa29I ATCGAT 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 106
BsaHI GRCGYC 2 cut(s) 115, 303
BsaI GGTCTC 1 cut(s) 32
BsaWI WCCGGW 4 cut(s) 212, 244, 257, 292
Bsc4I CCNNNNNNNGG 5 cut(s) 264, 292, 299, 313, 327
Bse118I RCCGGY 3 cut(s) 292, 299, 327
Bse1I ACTGG 3 cut(s) 286, 318, 381
Bse8I GATNNNNATC 1 cut(s) 106
BseCI ATCGAT 1 cut(s) 81
BseGI GGATG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 106
BseLI CCNNNNNNNGG 5 cut(s) 264, 292, 299, 313, 327
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 3 cut(s) 286, 318, 381
BseXI GCAGC 1 cut(s) 134
Bsh1285I CGRYCG 2 cut(s) 235, 297
BshFI GGCC 2 cut(s) 327, 424
BshNI GGYRCC 1 cut(s) 302
BshTI ACCGGT 1 cut(s) 292
BshVI ATCGAT 1 cut(s) 81
BsiEI CGRYCG 2 cut(s) 235, 297
BsiSI CCGG 9 cut(s) 59, 213, 225, 245, 258, 279, 293, 300, 328
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 5 cut(s) 264, 292, 299, 313, 327
BsmAI GTCTC 2 cut(s) 32, 467
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 2 cut(s) 327, 424
Bso31I GGTCTC 1 cut(s) 32
Bsp143I GATC 3 cut(s) 107, 124, 531
BspACI CCGC 2 cut(s) 89, 193
BspANI GGCC 2 cut(s) 327, 424
BspCNI CTCAG 1 cut(s) 212
BspDI ATCGAT 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 32
BsrFI RCCGGY 3 cut(s) 292, 299, 327
BsrI ACTGG 3 cut(s) 286, 318, 381
BssAI RCCGGY 3 cut(s) 292, 299, 327
BssMI GATC 3 cut(s) 107, 124, 531
BssNI GRCGYC 2 cut(s) 115, 303
Bst4CI ACNGT 3 cut(s) 51, 233, 253
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 2 cut(s) 115, 303
BstC8I GCNNGC 4 cut(s) 301, 329, 333, 549
BstDEI CTNAG 1 cut(s) 199
BstEII GGTNACC 2 cut(s) 253, 316
BstF5I GGATG 1 cut(s) 107
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 3 cut(s) 58, 305, 397
BstKTI GATC 3 cut(s) 110, 127, 534
BstMAI GTCTC 2 cut(s) 32, 467
BstMBI GATC 3 cut(s) 107, 124, 531
BstMCI CGRYCG 2 cut(s) 235, 297
BstMWI GCNNNNNNNGC 1 cut(s) 544
BstNSI RCATGY 1 cut(s) 551
BstPI GGTNACC 2 cut(s) 253, 316
BstSCI CCNGG 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 3 cut(s) 171, 356, 514
BstX2I RGATCY 2 cut(s) 107, 124
BstXI CCANNNNNNTGG 1 cut(s) 407
BstYI RGATCY 2 cut(s) 107, 124
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 2 cut(s) 327, 424
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 311
Cac8I GCNNGC 4 cut(s) 301, 329, 333, 549
CfoI GCGC 3 cut(s) 58, 305, 397
Cfr10I RCCGGY 3 cut(s) 292, 299, 327
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 2 cut(s) 104, 361
CspAI ACCGGT 1 cut(s) 292
CviAII CATG 2 cut(s) 119, 548
CviJI RGCY 7 cut(s) 92, 327, 335, 361, 372, 424, 562
CviKI_1 RGCY 7 cut(s) 92, 327, 335, 361, 372, 424, 562
DdeI CTNAG 1 cut(s) 199
DinI GGCGCC 1 cut(s) 304
DpnI GATC 3 cut(s) 109, 126, 533
DpnII GATC 3 cut(s) 107, 124, 531
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
EciI GGCGGA 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 377
Eco91I GGTNACC 2 cut(s) 253, 316
EcoO65I GGTNACC 2 cut(s) 253, 316
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
FaeI CATG 2 cut(s) 122, 551
FaiI YATR 4 cut(s) 120, 345, 549, 557
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FaqI GGGAC 1 cut(s) 85
FatI CATG 2 cut(s) 118, 547
Fnu4HI GCNGC 2 cut(s) 90, 148
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 90, 148
FspBI CTAG 1 cut(s) 158
GlaI GCGC 3 cut(s) 57, 304, 396
GluI GCNGC 2 cut(s) 90, 148
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 2 cut(s) 327, 424
HapII CCGG 9 cut(s) 59, 213, 225, 245, 258, 279, 293, 300, 328
HgaI GACGC 2 cut(s) 104, 361
HhaI GCGC 3 cut(s) 58, 305, 397
Hin1I GRCGYC 2 cut(s) 115, 303
Hin1II CATG 2 cut(s) 122, 551
Hin6I GCGC 3 cut(s) 56, 303, 395
HinP1I GCGC 3 cut(s) 56, 303, 395
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 4 cut(s) 7, 241, 261, 282
HpaII CCGG 9 cut(s) 59, 213, 225, 245, 258, 279, 293, 300, 328
HphI GGTGA 4 cut(s) 36, 247, 282, 310
Hpy166II GTNNAC 3 cut(s) 11, 44, 571
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 4 cut(s) 29, 158, 364, 472
Hpy8I GTNNAC 3 cut(s) 11, 44, 571
Hpy99I CGWCG 2 cut(s) 68, 176
HpyAV CCTTC 2 cut(s) 62, 164
HpyCH4III ACNGT 3 cut(s) 51, 233, 253
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 544
HpyF3I CTNAG 1 cut(s) 199
HpySE526I ACGT 1 cut(s) 74
Hsp92I GRCGYC 2 cut(s) 115, 303
Hsp92II CATG 2 cut(s) 122, 551
HspAI GCGC 3 cut(s) 56, 303, 395
KasI GGCGCC 1 cut(s) 302
KroI GCCGGC 2 cut(s) 299, 327
KroNI GCCGGC 2 cut(s) 301, 329
Kzo9I GATC 3 cut(s) 107, 124, 531
LmnI GCTCC 2 cut(s) 155, 402
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 2 cut(s) 25, 124
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 5 cut(s) 247, 253, 288, 316, 338
MalI GATC 3 cut(s) 109, 126, 533
MboI GATC 3 cut(s) 107, 124, 531
MboII GAAGA 7 cut(s) 44, 176, 194, 197, 361, 447, 514
MflI RGATCY 2 cut(s) 107, 124
MluCI AATT 1 cut(s) 478
Mly113I GGCGCC 1 cut(s) 303
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 5 cut(s) 79, 183, 317, 435, 456
MreI CGCCGGCG 1 cut(s) 299
MroNI GCCGGC 2 cut(s) 299, 327
MseI TTAA 2 cut(s) 77, 564
MspI CCGG 9 cut(s) 59, 213, 225, 245, 258, 279, 293, 300, 328
MspR9I CCNGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 544
NaeI GCCGGC 2 cut(s) 301, 329
NarI GGCGCC 1 cut(s) 303
NciI CCSGG 1 cut(s) 226
NdeII GATC 3 cut(s) 107, 124, 531
NgoMIV GCCGGC 2 cut(s) 299, 327
NlaIII CATG 2 cut(s) 122, 551
NlaIV GGNNCC 1 cut(s) 304
NmeAIII GCCGAG 2 cut(s) 30, 91
NmuCI GTSAC 4 cut(s) 247, 253, 288, 316
NspI RCATGY 1 cut(s) 551
PaeI GCATGC 1 cut(s) 551
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdiI GCCGGC 2 cut(s) 301, 329
PfeI GAWTC 3 cut(s) 241, 261, 282
PfoI TCCNGGA 1 cut(s) 224
PinAI ACCGGT 1 cut(s) 292
PkrI GCNGC 2 cut(s) 91, 149
PleI GAGTC 1 cut(s) 15
PluTI GGCGCC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 15
PspEI GGTNACC 2 cut(s) 253, 316
PspN4I GGNNCC 1 cut(s) 304
PsuI RGATCY 2 cut(s) 107, 124
SaqAI TTAA 2 cut(s) 77, 564
SatI GCNGC 2 cut(s) 90, 148
Sau3AI GATC 3 cut(s) 107, 124, 531
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 226
SetI ASST 4 cut(s) 77, 205, 363, 564
SfaNI GCATC 2 cut(s) 25, 124
SfoI GGCGCC 1 cut(s) 304
SgrAI CRCCGGYG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 1 cut(s) 551
Sse9I AATT 1 cut(s) 478
SsiI CCGC 2 cut(s) 89, 193
SspDI GGCGCC 1 cut(s) 302
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 3 cut(s) 51, 233, 253
TaiI ACGT 1 cut(s) 77
TaqI TCGA 3 cut(s) 30, 81, 471
TaqII GACCGA 1 cut(s) 14
TasI AATT 1 cut(s) 478
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 3 cut(s) 241, 261, 282
Tru1I TTAA 2 cut(s) 77, 564
Tru9I TTAA 2 cut(s) 77, 564
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 4 cut(s) 247, 253, 288, 316
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 4 cut(s) 247, 253, 288, 316
TspDTI ATGAA 2 cut(s) 195, 572
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 318
XapI RAATTY 1 cut(s) 478
XbaI TCTAGA 1 cut(s) 157
XceI RCATGY 1 cut(s) 551
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.