Rh3DG081800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0019487
Physical Location & Seq
Forward (+)
6291034 .. 6291231
198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG081800.1

Sequence Viewer

Length: 198 bp
ATGCCGAGTCCACCAACCACCATCGGTCTCGGAGATGCGAGTTCACCATCGTCTGCGCTGGACGACGAATGGACGTTAATCGATGAGGCGGCCGGTTGGGGATGGAGATCTCGGCGTCATGGAGATCTCCGTGATGCAGGAAATCGCTGCTCCCTTCTAGACGAAGACAACGACGATGATGAAGAAGAGAGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.21

Weight (kDa)

4.16

Isoelectric Point (pI)

85.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019487)

Species Orthologous Gene IDs
rosa_laevigata RLG00000028079 RLG00000029455
rosa_multiflora Rmu_sc0000918.1_g000003
rosa_samantha Rh1AG173400 Rh3DG081800 Rh4DG382300 Rh6AG370100 Rh7CG214700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 89, 193
AcoI YGGCCR 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 32
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 134
BccI CCATC 3 cut(s) 29, 55, 96
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 158
BglII AGATCT 2 cut(s) 107, 124
BisI GCNGC 2 cut(s) 90, 148
BlsI GCNGC 2 cut(s) 91, 149
BmsI GCATC 2 cut(s) 25, 124
BpiI GAAGAC 1 cut(s) 171
Bsa29I ATCGAT 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 106
BsaHI GRCGYC 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 92
Bse8I GATNNNNATC 1 cut(s) 106
BseCI ATCGAT 1 cut(s) 81
BseGI GGATG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 106
BseX3I CGGCCG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 107, 124
BspACI CCGC 2 cut(s) 89, 193
BspANI GGCC 1 cut(s) 92
BspDI ATCGAT 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssMI GATC 2 cut(s) 107, 124
BssNI GRCGYC 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 115
BstF5I GGATG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 2 cut(s) 110, 127
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 107, 124
BstMCI CGRYCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 2 cut(s) 107, 124
BstYI RGATCY 2 cut(s) 107, 124
BstZI CGGCCG 1 cut(s) 90
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 1 cut(s) 92
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 1 cut(s) 107
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 92
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 1 cut(s) 104
CviAII CATG 1 cut(s) 119
CviJI RGCY 1 cut(s) 92
CviKI_1 RGCY 1 cut(s) 92
DpnI GATC 2 cut(s) 109, 126
DpnII GATC 2 cut(s) 107, 124
EaeI YGGCCR 1 cut(s) 90
EagI CGGCCG 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
EclXI CGGCCG 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 32
Eco52I CGGCCG 1 cut(s) 90
FaeI CATG 1 cut(s) 122
FaiI YATR 1 cut(s) 120
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 90, 148
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 90, 148
FspBI CTAG 1 cut(s) 158
GlaI GCGC 1 cut(s) 57
GluI GCNGC 2 cut(s) 90, 148
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 2 cut(s) 11, 44
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 2 cut(s) 11, 44
Hpy99I CGWCG 2 cut(s) 68, 176
HpyAV CCTTC 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 74
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 107, 124
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 3 cut(s) 44, 106, 123
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 2 cut(s) 25, 124
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 74
MalI GATC 2 cut(s) 109, 126
MboI GATC 2 cut(s) 107, 124
MboII GAAGA 3 cut(s) 176, 194, 197
MflI RGATCY 2 cut(s) 107, 124
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 2 cut(s) 79, 183
MseI TTAA 1 cut(s) 77
MspI CCGG 1 cut(s) 93
NdeII GATC 2 cut(s) 107, 124
NlaIII CATG 1 cut(s) 122
NmeAIII GCCGAG 2 cut(s) 30, 91
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PkrI GCNGC 2 cut(s) 91, 149
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PsuI RGATCY 2 cut(s) 107, 124
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 2 cut(s) 90, 148
Sau3AI GATC 2 cut(s) 107, 124
SchI GAGTC 1 cut(s) 16
SetI ASST 1 cut(s) 77
SfaNI GCATC 2 cut(s) 25, 124
SsiI CCGC 2 cut(s) 89, 193
SspMI CTAG 1 cut(s) 158
TaiI ACGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 81
TaqII GACCGA 1 cut(s) 14
TauI GCSGC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 119
XbaI TCTAGA 1 cut(s) 157
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.