RLG00000031216

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017767
Physical Location & Seq
Reverse (-)
3058685 .. 3062137
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031216

Sequence Viewer

Length: 633 bp
ATGGCGTGGGTTTCACGCTCTGTTGATGTTAGCCTATTGTTAGGAATGGAATACCAAAAAACAACTCTGAGGCCAGTAAATTTATGTTTACTGCAATCACATGCAGTGCACGTGTTTCCTCCGCCGCACAGAGCAGCTTTGGCCGGGAGGAGTTCACACTTCACACTTACGAGAGAGTGGCCCGGCCGAATAACCAAGCTTGGGATTACCCAGGAAAAATTGGTTGTGACCTCTACCTGTTCTGTGGAAAGGACGCCCTCTAACCTGCTGAGGCTGCTGGATTTTTTGAAAGTCAATTGGCAGAGTCCATCTCGGAAGGCTAGGGGGAGGCTAGTGTATGCACCAGAGATCCCTGGCTTGCTTTCTGTTGATCCTACTGTGGATCCTCTCAAATCCCTGGCCAGTAATATTTCATTGGGTACAGAAGTTGAAGTCCAACTTGGGAAAACGTCTTCGGGTGTTTTTCAAGTGATGGCGTCAAATGAGGCCTCAAGTGACAACAATGGTGGGAGAAGAGAAGAACACTCGGAGAAAGGTATTTCTTTGTTGAAGTCCGAAGTAGCTGCTGTAAAATCTGATGTGGGGAGGCTCAGACCAACGGTTGGATGTTTGGACCCAATATTGGGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TamB

Protein Analysis

211

Amino Acids

22.87

Weight (kDa)

9.47

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 273
AccB7I CCANNNNNTGG 1 cut(s) 602
AciI CCGC 2 cut(s) 122, 125
AclWI GGATC 4 cut(s) 343, 365, 377, 390
AcoI YGGCCR 3 cut(s) 141, 184, 399
AcsI RAATTY 1 cut(s) 79
AcvI CACGTG 1 cut(s) 112
AcyI GRCGYC 2 cut(s) 254, 476
AfaI GTAC 1 cut(s) 421
AfiI CCNNNNNNNGG 4 cut(s) 201, 602, 622, 623
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 4 cut(s) 289, 431, 467, 550
AjnI CCWGG 3 cut(s) 210, 352, 396
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AluBI AGCT 3 cut(s) 137, 199, 563
AluI AGCT 3 cut(s) 137, 199, 563
Alw21I GWGCWC 1 cut(s) 111
Alw44I GTGCAC 1 cut(s) 107
AlwI GGATC 4 cut(s) 343, 365, 377, 390
AoxI GGCC 6 cut(s) 71, 141, 179, 184, 399, 486
ApaLI GTGCAC 1 cut(s) 107
ApeKI GCWGC 3 cut(s) 134, 274, 563
ApoI RAATTY 1 cut(s) 79
AspS9I GGNCC 2 cut(s) 180, 613
AsuC2I CCSGG 2 cut(s) 145, 183
AvaII GGWCC 1 cut(s) 613
BaeGI GKGCMC 1 cut(s) 111
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BalI TGGCCA 1 cut(s) 401
BamHI GGATCC 1 cut(s) 382
BbrPI CACGTG 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 3 cut(s) 146, 261, 550
BccI CCATC 2 cut(s) 316, 466
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 3 cut(s) 212, 354, 398
BcnI CCSGG 2 cut(s) 145, 183
BfaI CTAG 2 cut(s) 321, 332
BfuAI ACCTGC 1 cut(s) 273
BisI GCNGC 4 cut(s) 125, 135, 275, 564
BlsI GCNGC 4 cut(s) 126, 136, 276, 565
Bme1390I CCNGG 5 cut(s) 145, 183, 212, 354, 398
Bme18I GGWCC 1 cut(s) 613
BmgT120I GGNCC 2 cut(s) 180, 613
BmiI GGNNCC 2 cut(s) 384, 615
BmrFI CCNGG 5 cut(s) 145, 183, 212, 354, 398
BpiI GAAGAC 1 cut(s) 444
BplI GAGNNNNNCTC 2 cut(s) 295, 327
Bpu10I CCTNAGC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 475
BpuMI CCSGG 2 cut(s) 145, 183
BsaAI YACGTR 1 cut(s) 112
BsaHI GRCGYC 2 cut(s) 254, 476
BsaJI CCNNGG 3 cut(s) 210, 352, 396
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 602, 622, 623
Bse1I ACTGG 2 cut(s) 74, 402
BseBI CCWGG 3 cut(s) 212, 354, 398
BseDI CCNNGG 3 cut(s) 210, 352, 396
BseGI GGATG 1 cut(s) 611
BseLI CCNNNNNNNGG 4 cut(s) 201, 602, 622, 623
BseMII CTCAG 3 cut(s) 59, 260, 604
BseNI ACTGG 2 cut(s) 74, 402
BseRI GAGGAG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 111
BseX3I CGGCCG 1 cut(s) 184
BseXI GCAGC 3 cut(s) 146, 261, 550
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 6 cut(s) 73, 143, 181, 186, 401, 488
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 2 cut(s) 144, 183
BslI CCNNNNNNNGG 4 cut(s) 201, 602, 622, 623
BsnI GGCC 6 cut(s) 73, 143, 181, 186, 401, 488
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 3 cut(s) 348, 370, 382
BspACI CCGC 2 cut(s) 122, 125
BspANI GGCC 6 cut(s) 73, 143, 181, 186, 401, 488
BspCNI CTCAG 3 cut(s) 60, 261, 603
BspLI GGNNCC 2 cut(s) 384, 615
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 4 cut(s) 343, 365, 377, 390
BsrI ACTGG 2 cut(s) 74, 402
BssECI CCNNGG 3 cut(s) 210, 352, 396
BssMI GATC 3 cut(s) 348, 370, 382
BssNI GRCGYC 2 cut(s) 254, 476
Bst2UI CCWGG 3 cut(s) 212, 354, 398
Bst4CI ACNGT 2 cut(s) 379, 601
Bst6I CTCTTC 1 cut(s) 508
BstACI GRCGYC 2 cut(s) 254, 476
BstBAI YACGTR 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 3 cut(s) 68, 269, 590
BstF5I GGATG 1 cut(s) 611
BstKTI GATC 3 cut(s) 351, 373, 385
BstMBI GATC 3 cut(s) 348, 370, 382
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 140, 274
BstNI CCWGG 3 cut(s) 212, 354, 398
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 5 cut(s) 143, 181, 210, 352, 396
BstSLI GKGCMC 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 146, 261, 550
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 2 cut(s) 348, 382
BstYI RGATCY 2 cut(s) 348, 382
BstZI CGGCCG 1 cut(s) 184
BsuRI GGCC 6 cut(s) 73, 143, 181, 186, 401, 488
BtsCI GGATG 1 cut(s) 611
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 359
Cfr13I GGNCC 2 cut(s) 180, 613
CseI GACGC 2 cut(s) 262, 465
Csp6I GTAC 1 cut(s) 420
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 1 cut(s) 101
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 3 cut(s) 68, 269, 590
DpnI GATC 3 cut(s) 350, 372, 384
DpnII GATC 3 cut(s) 348, 370, 382
EaeI YGGCCR 3 cut(s) 141, 184, 399
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 508
EarI CTCTTC 1 cut(s) 508
EciI GGCGGA 1 cut(s) 111
EclXI CGGCCG 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 613
Eco52I CGGCCG 1 cut(s) 184
Eco72I CACGTG 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 210, 352, 396
FaeI CATG 1 cut(s) 104
FaiI YATR 3 cut(s) 85, 102, 339
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 1 cut(s) 100
Fnu4HI GCNGC 4 cut(s) 125, 135, 275, 564
FokI GGATG 1 cut(s) 618
Fsp4HI GCNGC 4 cut(s) 125, 135, 275, 564
FspBI CTAG 2 cut(s) 321, 332
GluI GCNGC 4 cut(s) 125, 135, 275, 564
HaeIII GGCC 6 cut(s) 73, 143, 181, 186, 401, 488
HapII CCGG 2 cut(s) 144, 183
HgaI GACGC 2 cut(s) 262, 465
Hin1I GRCGYC 2 cut(s) 254, 476
Hin1II CATG 1 cut(s) 104
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 1 cut(s) 304
HpaII CCGG 2 cut(s) 144, 183
Hpy166II GTNNAC 3 cut(s) 89, 109, 155
Hpy188I TCNGA 6 cut(s) 69, 315, 529, 556, 577, 593
Hpy8I GTNNAC 3 cut(s) 89, 109, 155
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 2 cut(s) 379, 601
HpyCH4IV ACGT 2 cut(s) 111, 449
HpyCH4V TGCA 4 cut(s) 94, 104, 109, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 274
HpyF3I CTNAG 3 cut(s) 68, 269, 590
HpySE526I ACGT 2 cut(s) 111, 449
Hsp92I GRCGYC 2 cut(s) 254, 476
Hsp92II CATG 1 cut(s) 104
Kzo9I GATC 3 cut(s) 348, 370, 382
Lsp1109I GCAGC 3 cut(s) 146, 261, 550
MaeI CTAG 2 cut(s) 321, 332
MaeII ACGT 2 cut(s) 111, 449
MaeIII GTNAC 2 cut(s) 226, 494
MalI GATC 3 cut(s) 350, 372, 384
MboI GATC 3 cut(s) 348, 370, 382
MboII GAAGA 3 cut(s) 444, 525, 530
MfeI CAATTG 1 cut(s) 295
MflI RGATCY 2 cut(s) 348, 382
MhlI GDGCHC 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 3 cut(s) 79, 218, 295
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 1 cut(s) 313
MmeI TCCRAC 2 cut(s) 460, 583
Mox20I TGGCCA 1 cut(s) 401
MscI TGGCCA 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 401
MspI CCGG 2 cut(s) 144, 183
MspR9I CCNGG 5 cut(s) 145, 183, 212, 354, 398
MunI CAATTG 1 cut(s) 295
MvaI CCWGG 3 cut(s) 212, 354, 398
MwoI GCNNNNNNNGC 2 cut(s) 140, 274
NciI CCSGG 2 cut(s) 145, 183
NdeII GATC 3 cut(s) 348, 370, 382
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 2 cut(s) 384, 615
NmuCI GTSAC 2 cut(s) 226, 494
NspI RCATGY 1 cut(s) 104
PceI AGGCCT 1 cut(s) 488
PflMI CCANNNNNTGG 1 cut(s) 602
PkrI GCNGC 4 cut(s) 126, 136, 276, 565
PleI GAGTC 1 cut(s) 312
PmaCI CACGTG 1 cut(s) 112
PmlI CACGTG 1 cut(s) 112
PpsI GAGTC 1 cut(s) 312
Ppu21I YACGTR 1 cut(s) 112
Psp6I CCWGG 3 cut(s) 210, 352, 396
PspCI CACGTG 1 cut(s) 112
PspGI CCWGG 3 cut(s) 210, 352, 396
PspN4I GGNNCC 2 cut(s) 384, 615
PspPI GGNCC 2 cut(s) 180, 613
PsuI RGATCY 2 cut(s) 348, 382
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
SatI GCNGC 4 cut(s) 125, 135, 275, 564
Sau3AI GATC 3 cut(s) 348, 370, 382
Sau96I GGNCC 2 cut(s) 180, 613
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 5 cut(s) 145, 183, 212, 354, 398
SduI GDGCHC 1 cut(s) 111
SetI ASST 9 cut(s) 114, 139, 201, 233, 239, 267, 452, 538, 565
SinI GGWCC 1 cut(s) 613
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
Sse9I AATT 3 cut(s) 79, 218, 295
SseBI AGGCCT 1 cut(s) 488
SsiI CCGC 2 cut(s) 122, 125
SspI AATATT 2 cut(s) 409, 621
SspMI CTAG 2 cut(s) 321, 332
StuI AGGCCT 1 cut(s) 488
StyD4I CCNGG 5 cut(s) 143, 181, 210, 352, 396
TaaI ACNGT 2 cut(s) 379, 601
TaiI ACGT 2 cut(s) 114, 452
TasI AATT 3 cut(s) 79, 218, 295
TauI GCSGC 1 cut(s) 127
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 2 cut(s) 226, 494
TseI GCWGC 3 cut(s) 134, 274, 563
Tsp45I GTSAC 2 cut(s) 226, 494
TspDTI ATGAA 1 cut(s) 402
TspRI CASTG 1 cut(s) 111
Van91I CCANNNNNTGG 1 cut(s) 602
VneI GTGCAC 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 613
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 104
XspI CTAG 2 cut(s) 321, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.