No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0381071 RchiOBHm_Chr4g0412921 |
| rosa_laevigata | RLG00000031216 |
| rosa_multiflora | Rmu_sc0001304.1_g000023 Rmu_sc0022280.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00343330 |
| rosa_samantha | Rh2DG415100 Rh4AG176500 Rh4BG116700 Rh4BG151700 Rh4CG187500 Rh5AG038600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 6 cut(s) | 83, 95, 108, 227, 239, 252 |
| AcoI | YGGCCR | 2 cut(s) | 117, 261 |
| AfaI | GTAC | 2 cut(s) | 139, 283 |
| AflIII | ACRYGT | 1 cut(s) | 173 |
| AgsI | TTSAA | 3 cut(s) | 149, 185, 293 |
| AjnI | CCWGG | 2 cut(s) | 114, 258 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 141, 173 |
| AlwI | GGATC | 6 cut(s) | 83, 95, 108, 227, 239, 252 |
| AoxI | GGCC | 2 cut(s) | 117, 261 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 129, 162, 273, 306 |
| BalI | TGGCCA | 2 cut(s) | 119, 263 |
| BamHI | GGATCC | 2 cut(s) | 100, 244 |
| BciT130I | CCWGG | 2 cut(s) | 116, 260 |
| BclI | TGATCA | 1 cut(s) | 31 |
| BfaI | CTAG | 1 cut(s) | 50 |
| Bme1390I | CCNGG | 2 cut(s) | 116, 260 |
| BmiI | GGNNCC | 2 cut(s) | 102, 246 |
| BmrFI | CCNGG | 2 cut(s) | 116, 260 |
| BsaJI | CCNNGG | 2 cut(s) | 114, 258 |
| Bse1I | ACTGG | 2 cut(s) | 120, 264 |
| BseBI | CCWGG | 2 cut(s) | 116, 260 |
| BseDI | CCNNGG | 2 cut(s) | 114, 258 |
| BseNI | ACTGG | 2 cut(s) | 120, 264 |
| BshFI | GGCC | 2 cut(s) | 119, 263 |
| BsnI | GGCC | 2 cut(s) | 119, 263 |
| Bsp143I | GATC | 5 cut(s) | 31, 88, 100, 232, 244 |
| BspANI | GGCC | 2 cut(s) | 119, 263 |
| BspLI | GGNNCC | 2 cut(s) | 102, 246 |
| BspPI | GGATC | 6 cut(s) | 83, 95, 108, 227, 239, 252 |
| BsrI | ACTGG | 2 cut(s) | 120, 264 |
| BssECI | CCNNGG | 2 cut(s) | 114, 258 |
| BssMI | GATC | 5 cut(s) | 31, 88, 100, 232, 244 |
| Bst2UI | CCWGG | 2 cut(s) | 116, 260 |
| Bst4CI | ACNGT | 2 cut(s) | 97, 241 |
| BstC8I | GCNNGC | 2 cut(s) | 77, 221 |
| BstKTI | GATC | 5 cut(s) | 34, 91, 103, 235, 247 |
| BstMBI | GATC | 5 cut(s) | 31, 88, 100, 232, 244 |
| BstNI | CCWGG | 2 cut(s) | 116, 260 |
| BstNSI | RCATGY | 1 cut(s) | 177 |
| BstSCI | CCNGG | 2 cut(s) | 114, 258 |
| BstX2I | RGATCY | 2 cut(s) | 100, 244 |
| BstYI | RGATCY | 2 cut(s) | 100, 244 |
| BsuRI | GGCC | 2 cut(s) | 119, 263 |
| Cac8I | GCNNGC | 2 cut(s) | 77, 221 |
| Csp6I | GTAC | 2 cut(s) | 138, 282 |
| CviAII | CATG | 1 cut(s) | 174 |
| CviJI | RGCY | 3 cut(s) | 49, 119, 263 |
| CviKI_1 | RGCY | 3 cut(s) | 49, 119, 263 |
| CviQI | GTAC | 2 cut(s) | 138, 282 |
| DpnI | GATC | 5 cut(s) | 33, 90, 102, 234, 246 |
| DpnII | GATC | 5 cut(s) | 31, 88, 100, 232, 244 |
| EaeI | YGGCCR | 2 cut(s) | 117, 261 |
| EcoRII | CCWGG | 2 cut(s) | 114, 258 |
| FaeI | CATG | 1 cut(s) | 177 |
| FaiI | YATR | 4 cut(s) | 57, 84, 175, 228 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 141, 173, 285, 317 |
| FatI | CATG | 1 cut(s) | 173 |
| FbaI | TGATCA | 1 cut(s) | 31 |
| FspBI | CTAG | 1 cut(s) | 50 |
| HaeIII | GGCC | 2 cut(s) | 119, 263 |
| Hin1II | CATG | 1 cut(s) | 177 |
| HpyAV | CCTTC | 2 cut(s) | 8, 13 |
| HpyCH4III | ACNGT | 2 cut(s) | 97, 241 |
| HpyCH4IV | ACGT | 2 cut(s) | 166, 310 |
| HpyCH4V | TGCA | 1 cut(s) | 59 |
| HpySE526I | ACGT | 2 cut(s) | 166, 310 |
| Hsp92II | CATG | 1 cut(s) | 177 |
| Ksp22I | TGATCA | 1 cut(s) | 31 |
| Kzo9I | GATC | 5 cut(s) | 31, 88, 100, 232, 244 |
| LpnPI | CCDG | 7 cut(s) | 20, 101, 128, 133, 245, 272, 277 |
| MaeI | CTAG | 1 cut(s) | 50 |
| MaeII | ACGT | 2 cut(s) | 166, 310 |
| MalI | GATC | 5 cut(s) | 33, 90, 102, 234, 246 |
| MboI | GATC | 5 cut(s) | 31, 88, 100, 232, 244 |
| MflI | RGATCY | 2 cut(s) | 100, 244 |
| MlsI | TGGCCA | 2 cut(s) | 119, 263 |
| MluNI | TGGCCA | 2 cut(s) | 119, 263 |
| MmeI | TCCRAC | 1 cut(s) | 178 |
| MnlI | CCTC | 3 cut(s) | 39, 114, 258 |
| Mox20I | TGGCCA | 2 cut(s) | 119, 263 |
| MscI | TGGCCA | 2 cut(s) | 119, 263 |
| MseI | TTAA | 1 cut(s) | 197 |
| Msp20I | TGGCCA | 2 cut(s) | 119, 263 |
| MspR9I | CCNGG | 2 cut(s) | 116, 260 |
| MvaI | CCWGG | 2 cut(s) | 116, 260 |
| NdeII | GATC | 5 cut(s) | 31, 88, 100, 232, 244 |
| NlaIII | CATG | 1 cut(s) | 177 |
| NlaIV | GGNNCC | 2 cut(s) | 102, 246 |
| NspI | RCATGY | 1 cut(s) | 177 |
| PciI | ACATGT | 1 cut(s) | 173 |
| PscI | ACATGT | 1 cut(s) | 173 |
| Psp6I | CCWGG | 2 cut(s) | 114, 258 |
| PspGI | CCWGG | 2 cut(s) | 114, 258 |
| PspN4I | GGNNCC | 2 cut(s) | 102, 246 |
| PsuI | RGATCY | 2 cut(s) | 100, 244 |
| RsaI | GTAC | 2 cut(s) | 139, 283 |
| RsaNI | GTAC | 2 cut(s) | 138, 282 |
| SaqAI | TTAA | 1 cut(s) | 197 |
| Sau3AI | GATC | 5 cut(s) | 31, 88, 100, 232, 244 |
| ScrFI | CCNGG | 2 cut(s) | 116, 260 |
| SetI | ASST | 5 cut(s) | 44, 73, 169, 217, 313 |
| SspI | AATATT | 2 cut(s) | 127, 271 |
| SspMI | CTAG | 1 cut(s) | 50 |
| StyD4I | CCNGG | 2 cut(s) | 114, 258 |
| TaaI | ACNGT | 2 cut(s) | 97, 241 |
| TaiI | ACGT | 2 cut(s) | 169, 313 |
| TaqI | TCGA | 1 cut(s) | 5 |
| Tru1I | TTAA | 1 cut(s) | 197 |
| Tru9I | TTAA | 1 cut(s) | 197 |
| TspDTI | ATGAA | 2 cut(s) | 120, 264 |
| XceI | RCATGY | 1 cut(s) | 177 |
| XspI | CTAG | 1 cut(s) | 50 |