Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019014

Physical Location & Seq

Genomic Coordinates Forward (+)

8435723 .. 8436265

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031816

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTGGAAGCTGCAAAAGAGACTACATTGTTACCTTAACTTTTATGGAGAAGAATTTCACGCCTCGAACTTGTTAGAGCAACAATTGCATTTAATGAAAGCAACTTACTTGGCAGTTGTGGTTTTGGCTCAGTATATAAAGGAACATTCTGATGGGATAGATGTGGCCATAAAGGTTTTCAATTTGCAACTAGAAGGAGCATTCAAGAGTTTCGATATAGAGTGTGAAATGCTAGGCAACATTTGGCATCGAAATCTTGTCAAAATCATCAGTTGCTGCAGTCCAATTGAATTCAAAGGCGTGGTACTGAACTACATGCCTAATTGGAGCCTTGCGAAGTTGTTGTATTCTCTAAACTTTTGTTTGAACATTCTACAAAGATTGAATATTAATGTAGATGTTGCATTGGCATTGGAATACCTTCATCATGGCTATGAAACACCTATTGTTCACTGTGATTTGAAGCCCAACAATATCCTGCTGGATGAGGATATGAGTGCACATGCTGCTGACTTTGGCATTGTAAAACTCGTGTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

181

Amino Acids

20.82

Weight (kDa)

6.11

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	38 - 178	5e-19	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	47 - 177	7e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019014)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0016011 RchiOBHm_Chr5g0042081
rosa_laevigata	RLG00000031816
rosa_multiflora	Rmu_co8103216.1_g000001 Rmu_sc0000299.1_g000023 Rmu_sc0001878.1_g000002 Rmu_sc0021845.1_g000004 Rmu_sc0023439.1_g000002 Rmu_sc0023439.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	53, 290
AfaI	GTAC	1 cut(s)	306
AgsI	TTSAA	7 cut(s)	181, 205, 290, 295, 367, 385, 463
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	13
Alw44I	GTGCAC	1 cut(s)	498
AlwNI	CAGNNNCTG	1 cut(s)	276
AoxI	GGCC	1 cut(s)	165
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	3 cut(s)	10, 276, 506
ApoI	RAATTY	2 cut(s)	53, 290
AseI	ATTAAT	1 cut(s)	390
Asp700I	GAANNNNTTC	2 cut(s)	54, 420
BaeGI	GKGCMC	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	167
BauI	CACGAG	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	2 cut(s)	263, 493
BccI	CCATC	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	2 cut(s)	191, 233
BfmI	CTRYAG	1 cut(s)	277
BisI	GCNGC	3 cut(s)	11, 277, 507
BlsI	GCNGC	3 cut(s)	12, 278, 508
BmiI	GGNNCC	1 cut(s)	329
BmsI	GCATC	1 cut(s)	256
BseGI	GGATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	2 cut(s)	263, 493
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	502
BsmAI	GTCTC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	502
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	329
BspMAI	CTGCAG	1 cut(s)	281
BssSI	CACGAG	1 cut(s)	530
Bst2BI	CACGAG	1 cut(s)	530
Bst4CI	ACNGT	1 cut(s)	455
BstAPI	GCANNNNNTGC	2 cut(s)	85, 506
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	490
BstMAI	GTCTC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 506
BstNSI	RCATGY	2 cut(s)	319, 506
BstSFI	CTRYAG	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	2 cut(s)	263, 493
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	1 cut(s)	451
CaiI	CAGNNNCTG	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	3 cut(s)	316, 428, 503
CviJI	RGCY	6 cut(s)	10, 128, 167, 330, 432, 466
CviKI_1	RGCY	6 cut(s)	10, 128, 167, 330, 432, 466
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	290
FaeI	CATG	3 cut(s)	319, 431, 506
FatI	CATG	3 cut(s)	315, 427, 502
Fnu4HI	GCNGC	3 cut(s)	11, 277, 507
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	3 cut(s)	11, 277, 507
FspBI	CTAG	2 cut(s)	191, 233
GluI	GCNGC	3 cut(s)	11, 277, 507
HaeIII	GGCC	1 cut(s)	167
Hin1II	CATG	3 cut(s)	319, 431, 506
Hpy166II	GTNNAC	2 cut(s)	451, 500
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	2 cut(s)	451, 500
HpyAV	CCTTC	2 cut(s)	188, 431
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4V	TGCA	6 cut(s)	13, 88, 187, 279, 404, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 506
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	319, 431, 506
LmnI	GCTCC	2 cut(s)	197, 327
LpnPI	CCDG	2 cut(s)	467, 491
Lsp1109I	GCAGC	2 cut(s)	263, 493
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	191, 233
MaeIII	GTNAC	1 cut(s)	29
MboII	GAAGA	1 cut(s)	62
MfeI	CAATTG	2 cut(s)	83, 285
MhlI	GDGCHC	1 cut(s)	502
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	6 cut(s)	53, 83, 181, 285, 290, 322
MluNI	TGGCCA	1 cut(s)	167
MnlI	CCTC	2 cut(s)	73, 481
Mox20I	TGGCCA	1 cut(s)	167
MroXI	GAANNNNTTC	2 cut(s)	54, 420
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	3 cut(s)	36, 92, 390
MslI	CAYNNNNRTG	2 cut(s)	150, 432
Msp20I	TGGCCA	1 cut(s)	167
MunI	CAATTG	2 cut(s)	83, 285
Mva1269I	GAATGC	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	85, 506
NlaIII	CATG	3 cut(s)	319, 431, 506
NlaIV	GGNNCC	1 cut(s)	329
NspI	RCATGY	2 cut(s)	319, 506
PctI	GAATGC	1 cut(s)	200
PdmI	GAANNNNTTC	2 cut(s)	54, 420
PkrI	GCNGC	3 cut(s)	12, 278, 508
PshBI	ATTAAT	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	276
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	2 cut(s)	150, 432
SaqAI	TTAA	3 cut(s)	36, 92, 390
SatI	GCNGC	3 cut(s)	11, 277, 507
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	5 cut(s)	12, 36, 177, 423, 445
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	277
SmiMI	CAYNNNNRTG	2 cut(s)	150, 432
Sse9I	AATT	6 cut(s)	53, 83, 181, 285, 290, 322
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	2 cut(s)	191, 233
TaaI	ACNGT	1 cut(s)	455
TaqI	TCGA	3 cut(s)	65, 213, 250
TasI	AATT	6 cut(s)	53, 83, 181, 285, 290, 322
Tru1I	TTAA	3 cut(s)	36, 92, 390
Tru9I	TTAA	3 cut(s)	36, 92, 390
TscAI	CASTG	1 cut(s)	458
TseI	GCWGC	3 cut(s)	10, 276, 506
TspDTI	ATGAA	3 cut(s)	110, 413, 450
TspRI	CASTG	1 cut(s)	458
VneI	GTGCAC	1 cut(s)	498
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	2 cut(s)	53, 290
XceI	RCATGY	2 cut(s)	319, 506
XmnI	GAANNNNTTC	2 cut(s)	54, 420
XspI	CTAG	2 cut(s)	191, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.