Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000299.1

Orthogroup ID

OG0019014

Physical Location & Seq

Genomic Coordinates Forward (+)

97897 .. 98972

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000299.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgatactatgcagaaaaaggaatgtggaagctgcaacagatcagactaccctgtcacctcaaaaacttctttggagaaaagtttcacgcttggaacttctaagggcaacaaatggatttagtgaatgcaatttacttggcactggggcttttggctcagtatacaaaggcacaatgtcagatgggatagacgttgcaataaaggttttcaacttggaagtagaaggagtttccaagagttctgataatgaatgtgaaatgctaagcaatattcaggttggatataacgatagatgttgcatcggcattggaataccttcatcacctatcatccattgtgatctgaagcccagcaacatactaatagatgatgatatggttgcacatgttgctgattttggcattgcaaaactcctaggtggtggaaattctacgactcataccataaccctagcaaccattggttatatggctccaggtggatatactgttgcttgtttatttataaactttggtactgtactgatggaaacattcacaaagaggaagccaacagacgagatgtttggtggggaggtgagtatgaagctatgggttgcagattcagtatttccaggtggaacagtggaagttgtagatgccaatttatttgggactgaagaagacgatgattttgcgcgagtgtttatcatcccttatgagattggctctagcgtgttgtgcagaatcaccagaaaagaggataagtatgcaagatgcgctagccatgctcaacaaaaccacgaccaagtttttgaagaacgctgcaggaggtgctgtgtaaaatcgtcctcttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

279

Amino Acids

30.56

Weight (kDa)

5.32

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019014)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0016011 RchiOBHm_Chr5g0042081
rosa_laevigata	RLG00000031816
rosa_multiflora	Rmu_co8103216.1_g000001 Rmu_sc0000299.1_g000023 Rmu_sc0001878.1_g000002 Rmu_sc0021845.1_g000004 Rmu_sc0023439.1_g000002 Rmu_sc0023439.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
AasI	GACNNNNNNGTC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	2 cut(s)	365, 678
AfaI	GTAC	2 cut(s)	517, 522
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	211, 797
AjnI	CCWGG	2 cut(s)	475, 613
AluBI	AGCT	2 cut(s)	32, 589
AluI	AGCT	2 cut(s)	32, 589
ApeKI	GCWGC	2 cut(s)	32, 804
ApoI	RAATTY	1 cut(s)	427
ArsI	GACNNNNNNTTYG	6 cut(s)	548, 580, 656, 688, 776, 808
Asp700I	GAANNNNTTC	2 cut(s)	82, 316
AspA2I	CCTAGG	1 cut(s)	415
AspLEI	GCGC	2 cut(s)	679, 761
AsuHPI	GGTGA	4 cut(s)	48, 315, 589, 721
AsuNHI	GCTAGC	1 cut(s)	761
AvrII	CCTAGG	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	669
BbvI	GCAGC	2 cut(s)	19, 791
BccI	CCATC	2 cut(s)	176, 520
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	2 cut(s)	477, 615
BfaI	CTAG	4 cut(s)	416, 452, 711, 762
BfmI	CTRYAG	1 cut(s)	805
BisI	GCNGC	2 cut(s)	33, 805
BlnI	CCTAGG	1 cut(s)	415
BlpI	GCTNAGC	1 cut(s)	263
BlsI	GCNGC	2 cut(s)	34, 806
Bme1390I	CCNGG	2 cut(s)	477, 615
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	2 cut(s)	477, 615
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	3 cut(s)	309, 628, 746
BmtI	GCTAGC	1 cut(s)	765
BmuI	ACTGGG	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	669
BplI	GAGNNNNNCTC	2 cut(s)	692, 724
BpmI	CTGGAG	1 cut(s)	459
Bpu1102I	GCTNAGC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	802, 832
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	477, 615
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	2 cut(s)	330, 690
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	19, 791
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	742
Bsh1236I	CGCG	1 cut(s)	679
BslFI	GGGAC	1 cut(s)	667
BsmFI	GGGAC	1 cut(s)	667
BsmI	GAATGC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	40, 340
Bsp1720I	GCTNAGC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	474
BspMAI	CTGCAG	1 cut(s)	809
BspOI	GCTAGC	1 cut(s)	765
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	2 cut(s)	40, 340
BssNAI	GTATAC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	415
Bst1107I	GTATAC	1 cut(s)	163
Bst2UI	CCWGG	2 cut(s)	477, 615
Bst4CI	ACNGT	3 cut(s)	490, 520, 625
BstAPI	GCANNNNNTGC	2 cut(s)	389, 813
BstC8I	GCNNGC	1 cut(s)	763
BstDEI	CTNAG	3 cut(s)	101, 157, 263
BstF5I	GGATG	2 cut(s)	330, 690
BstFNI	CGCG	1 cut(s)	679
BstHHI	GCGC	2 cut(s)	679, 761
BstKTI	GATC	2 cut(s)	43, 343
BstMBI	GATC	2 cut(s)	40, 340
BstMWI	GCNNNNNNNGC	5 cut(s)	389, 720, 758, 767, 813
BstNI	CCWGG	2 cut(s)	477, 615
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	475, 613
BstSFI	CTRYAG	1 cut(s)	805
BstUI	CGCG	1 cut(s)	679
BstV1I	GCAGC	2 cut(s)	19, 791
BstV2I	GAAGAC	1 cut(s)	669
BstZ17I	GTATAC	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	330, 690
BtsIMutI	CAGTG	2 cut(s)	141, 630
Cac8I	GCNNGC	1 cut(s)	763
CfoI	GCGC	2 cut(s)	679, 761
Csp6I	GTAC	2 cut(s)	516, 521
CviAII	CATG	2 cut(s)	386, 767
CviJI	RGCY	9 cut(s)	32, 149, 156, 349, 473, 550, 589, 708, 765
CviKI_1	RGCY	9 cut(s)	32, 149, 156, 349, 473, 550, 589, 708, 765
CviQI	GTAC	2 cut(s)	516, 521
DdeI	CTNAG	3 cut(s)	101, 157, 263
DpnI	GATC	2 cut(s)	42, 342
DpnII	GATC	2 cut(s)	40, 340
DrdI	GACNNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	365, 678
EcoRII	CCWGG	2 cut(s)	475, 613
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	2 cut(s)	389, 770
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	2 cut(s)	385, 766
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	33, 805
FokI	GGATG	2 cut(s)	317, 677
Fsp4HI	GCNGC	2 cut(s)	33, 805
FspBI	CTAG	4 cut(s)	416, 452, 711, 762
GlaI	GCGC	2 cut(s)	678, 760
GluI	GCNGC	2 cut(s)	33, 805
GsaI	CCCAGC	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	459
HhaI	GCGC	2 cut(s)	679, 761
Hin1II	CATG	2 cut(s)	389, 770
Hin6I	GCGC	2 cut(s)	677, 759
HinP1I	GCGC	2 cut(s)	677, 759
HinfI	GANTC	3 cut(s)	436, 602, 726
HphI	GGTGA	4 cut(s)	48, 315, 589, 721
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	45, 181, 244, 345
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	218, 327
HpyCH4III	ACNGT	3 cut(s)	490, 520, 625
HpyCH4IV	ACGT	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	5 cut(s)	389, 720, 758, 767, 813
HpyF3I	CTNAG	3 cut(s)	101, 157, 263
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	389, 770
HspAI	GCGC	2 cut(s)	677, 759
Kzo9I	GATC	2 cut(s)	40, 340
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	2 cut(s)	19, 791
LweI	GCATC	3 cut(s)	309, 628, 746
MaeI	CTAG	4 cut(s)	416, 452, 711, 762
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	2 cut(s)	42, 342
MboI	GATC	2 cut(s)	40, 340
MboII	GAAGA	3 cut(s)	671, 674, 809
MluCI	AATT	3 cut(s)	130, 427, 643
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	5 cut(s)	69, 537, 568, 733, 804
MroXI	GAANNNNTTC	2 cut(s)	82, 316
MspR9I	CCNGG	2 cut(s)	477, 615
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	2 cut(s)	477, 615
MvnI	CGCG	1 cut(s)	679
MwoI	GCNNNNNNNGC	5 cut(s)	389, 720, 758, 767, 813
NdeII	GATC	2 cut(s)	40, 340
NheI	GCTAGC	1 cut(s)	761
NlaIII	CATG	2 cut(s)	389, 770
NlaIV	GGNNCC	1 cut(s)	474
NmuCI	GTSAC	1 cut(s)	54
NspI	RCATGY	1 cut(s)	389
PciI	ACATGT	1 cut(s)	385
PctI	GAATGC	1 cut(s)	131
PdmI	GAANNNNTTC	2 cut(s)	82, 316
PfeI	GAWTC	2 cut(s)	602, 726
PkrI	GCNGC	2 cut(s)	34, 806
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PscI	ACATGT	1 cut(s)	385
PsiI	TTATAA	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	475, 613
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	475, 613
PspN4I	GGNNCC	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	809
RsaI	GTAC	2 cut(s)	517, 522
RsaNI	GTAC	2 cut(s)	516, 521
SatI	GCNGC	2 cut(s)	33, 805
Sau3AI	GATC	2 cut(s)	40, 340
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	2 cut(s)	477, 615
SfaNI	GCATC	3 cut(s)	309, 628, 746
SfcI	CTRYAG	1 cut(s)	805
Sse9I	AATT	3 cut(s)	130, 427, 643
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	4 cut(s)	416, 452, 711, 762
StyD4I	CCNGG	2 cut(s)	475, 613
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	3 cut(s)	490, 520, 625
TaiI	ACGT	1 cut(s)	195
TasI	AATT	3 cut(s)	130, 427, 643
TatI	WGTACW	1 cut(s)	520
TfiI	GAWTC	2 cut(s)	602, 726
TscAI	CASTG	2 cut(s)	148, 630
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	2 cut(s)	32, 804
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	3 cut(s)	264, 309, 599
TspRI	CASTG	2 cut(s)	148, 630
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XmaJI	CCTAGG	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	162
XmnI	GAANNNNTTC	2 cut(s)	82, 316
XspI	CTAG	4 cut(s)	416, 452, 711, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.