Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001878.1

Orthogroup ID

OG0019014

Physical Location & Seq

Genomic Coordinates Forward (+)

1749 .. 2650

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001878.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgtcagatgggatagacgttgcaaaaaaggttttcaacttggaagtagaaggagtttccaagagttctgataatgaatgtgaaatgctaagcaatattcgttgtcgaaatcttctcaaaatcatcacttgttgcagtcaaacagatttcaaagctgttgtaccgaactacatgcctaatgggagccttgataacttcttgtactctaggaactcttctttgaacatattgcagagggtatgggataaaaggaatagtttcgagaagaggggatgtgtttacagctttggtactgtactgatggaaacattcacaaagaggaagccaacagacgagatgtttggtggggaggtgagtatgaagctatgggttgcagattcagtatttccaggtggaacagtggaagttgtagatgccaatttatttgggactgaagaagacgatgattttgcgcgagtgtttatcatcccttatgagattggctctagcgtgttgtgcagaatcaccagaaaagaggataagtatgcaagatgcgctagccatgctcaacaaaaccacgaccaagtttttgaagaacgctgcaggaggtgctgtgtaaaatcgtcctcttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

204

Amino Acids

23.17

Weight (kDa)

5.81

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019014)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0016011 RchiOBHm_Chr5g0042081
rosa_laevigata	RLG00000031816
rosa_multiflora	Rmu_co8103216.1_g000001 Rmu_sc0000299.1_g000023 Rmu_sc0001878.1_g000002 Rmu_sc0021845.1_g000004 Rmu_sc0023439.1_g000002 Rmu_sc0023439.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	454
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	4 cut(s)	162, 203, 292, 297
AgsI	TTSAA	4 cut(s)	37, 151, 223, 572
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	3 cut(s)	155, 285, 364
AluI	AGCT	3 cut(s)	155, 285, 364
ApeKI	GCWGC	1 cut(s)	579
ArsI	GACNNNNNNTTYG	6 cut(s)	323, 355, 431, 463, 551, 583
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	454, 536
AsuHPI	GGTGA	2 cut(s)	364, 496
AsuNHI	GCTAGC	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	2 cut(s)	2, 295
BcgI	CGANNNNNNTGC	4 cut(s)	154, 188, 431, 465
BciT130I	CCWGG	1 cut(s)	390
BfaI	CTAG	3 cut(s)	207, 486, 537
BfmI	CTRYAG	1 cut(s)	580
BisI	GCNGC	1 cut(s)	580
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	581
Bme1390I	CCNGG	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	403, 521
BmtI	GCTAGC	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
Bpu1102I	GCTNAGC	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
BseBI	CCWGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	278, 465
BseXI	GCAGC	1 cut(s)	566
BsgI	GTGCAG	1 cut(s)	517
Bsh1236I	CGCG	1 cut(s)	454
BslFI	GGGAC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	442
Bsp1720I	GCTNAGC	1 cut(s)	89
BspFNI	CGCG	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	185
BspMAI	CTGCAG	1 cut(s)	584
BspOI	GCTAGC	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	295, 400
Bst6I	CTCTTC	2 cut(s)	220, 260
BstAPI	GCANNNNNTGC	1 cut(s)	588
BstC8I	GCNNGC	1 cut(s)	538
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	278, 465
BstFNI	CGCG	1 cut(s)	454
BstHHI	GCGC	2 cut(s)	454, 536
BstMWI	GCNNNNNNNGC	4 cut(s)	495, 533, 542, 588
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	580
BstUI	CGCG	1 cut(s)	454
BstV1I	GCAGC	1 cut(s)	566
BstV2I	GAAGAC	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	278, 465
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	538
CfoI	GCGC	2 cut(s)	454, 536
Csp6I	GTAC	4 cut(s)	161, 202, 291, 296
CviAII	CATG	2 cut(s)	172, 542
CviJI	RGCY	7 cut(s)	155, 186, 285, 325, 364, 483, 540
CviKI_1	RGCY	7 cut(s)	155, 186, 285, 325, 364, 483, 540
CviQI	GTAC	4 cut(s)	161, 202, 291, 296
DdeI	CTNAG	1 cut(s)	89
Eam1104I	CTCTTC	2 cut(s)	220, 260
EarI	CTCTTC	2 cut(s)	220, 260
Eco57I	CTGAAG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	388
FaeI	CATG	2 cut(s)	175, 545
FaiI	YATR	8 cut(s)	173, 227, 241, 359, 367, 474, 525, 543
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	2 cut(s)	171, 541
Fnu4HI	GCNGC	1 cut(s)	580
FokI	GGATG	2 cut(s)	285, 452
Fsp4HI	GCNGC	1 cut(s)	580
FspBI	CTAG	3 cut(s)	207, 486, 537
GlaI	GCGC	2 cut(s)	453, 535
GluI	GCNGC	1 cut(s)	580
HhaI	GCGC	2 cut(s)	454, 536
Hin1II	CATG	2 cut(s)	175, 545
Hin6I	GCGC	2 cut(s)	452, 534
HinP1I	GCGC	2 cut(s)	452, 534
HinfI	GANTC	2 cut(s)	377, 501
HphI	GGTGA	2 cut(s)	364, 496
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	7, 70
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	295, 400
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	7 cut(s)	23, 135, 232, 374, 498, 527, 582
HpyF10VI	GCNNNNNNNGC	4 cut(s)	495, 533, 542, 588
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	175, 545
HspAI	GCGC	2 cut(s)	452, 534
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	4 cut(s)	375, 402, 520, 568
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	2 cut(s)	403, 521
MaeI	CTAG	3 cut(s)	207, 486, 537
MaeII	ACGT	1 cut(s)	18
MboII	GAAGA	6 cut(s)	104, 207, 277, 446, 449, 584
MluCI	AATT	1 cut(s)	418
MnlI	CCTC	6 cut(s)	228, 261, 312, 343, 508, 579
MroXI	GAANNNNTTC	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	454
MwoI	GCNNNNNNNGC	4 cut(s)	495, 533, 542, 588
NheI	GCTAGC	1 cut(s)	536
NlaIII	CATG	2 cut(s)	175, 545
NlaIV	GGNNCC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	377, 501
PkrI	GCNGC	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	584
RsaI	GTAC	4 cut(s)	162, 203, 292, 297
RsaNI	GTAC	4 cut(s)	161, 202, 291, 296
SatI	GCNGC	1 cut(s)	580
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	8 cut(s)	21, 33, 157, 287, 354, 366, 394, 590
SfaNI	GCATC	2 cut(s)	403, 521
SfcI	CTRYAG	1 cut(s)	580
Sse9I	AATT	1 cut(s)	418
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	3 cut(s)	207, 486, 537
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	2 cut(s)	295, 400
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	106, 261
TasI	AATT	1 cut(s)	418
TatI	WGTACW	2 cut(s)	201, 295
TfiI	GAWTC	2 cut(s)	377, 501
TscAI	CASTG	1 cut(s)	405
TseI	GCWGC	1 cut(s)	579
TspDTI	ATGAA	2 cut(s)	90, 374
TspRI	CASTG	1 cut(s)	405
XceI	RCATGY	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	3 cut(s)	207, 486, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.