Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023439.1

Orthogroup ID

OG0019014

Physical Location & Seq

Genomic Coordinates Forward (+)

4359 .. 5540

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023439.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggatttcaccaaagcaacttacttggtattgggggttttgggtcagtatataaaggaacactttgctgatgggattgatgttgccataaaggttttcaatttagatacagaaggggctttcacaagttttgatatggaatgcgaaatgctaagcaacatttgtcatcgaaatcttatcaaagtcatcagttgttgtagtcaaattgatttcaaggttgtgatattgaactacatgcctaatgggagccttgaccattggttgtattctcagaacttttctttgaacatcctgcagaggttgaccatattgattgatgttgcatcgacattggaataccttcatcatggttatgaaatacctattgttcattgtgatttgaagcccaacaacatactactagatgatgatatggtcgcacatgttgctgattttggcattgcaaaactcttgggtggagattctataactcataccatgaccctagccacaattggagagagaagtcatcctccaccttgctgtgctccggtgactggtggccggccgcggtctccgcgactggtgaccggtgaccggaatccggcatccgatgaccagaatccggctacaggactggtgactggattccggcttctgaatttattgccccctaataatactcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

222

Amino Acids

24.52

Weight (kDa)

5.33

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019014)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0016011 RchiOBHm_Chr5g0042081
rosa_laevigata	RLG00000031816
rosa_multiflora	Rmu_co8103216.1_g000001 Rmu_sc0000299.1_g000023 Rmu_sc0001878.1_g000002 Rmu_sc0021845.1_g000004 Rmu_sc0023439.1_g000002 Rmu_sc0023439.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	550, 559
AciI	CCGC	3 cut(s)	548, 550, 557
AcoI	YGGCCR	2 cut(s)	541, 545
AcsI	RAATTY	1 cut(s)	640
AfiI	CCNNNNNNNGG	5 cut(s)	536, 576, 583, 604, 611
AflIII	ACRYGT	1 cut(s)	421
AgeI	ACCGGT	1 cut(s)	569
AgsI	TTSAA	5 cut(s)	100, 214, 229, 286, 382
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	1 cut(s)	558
AoxI	GGCC	2 cut(s)	541, 545
ApoI	RAATTY	1 cut(s)	640
AsiGI	ACCGGT	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	339
AsuHPI	GGTGA	4 cut(s)	544, 577, 584, 631
Bbv12I	GWGCWC	1 cut(s)	529
BccI	CCATC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	2 cut(s)	401, 485
BfmI	CTRYAG	2 cut(s)	293, 609
BisI	GCNGC	1 cut(s)	548
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	549
BmiI	GGNNCC	1 cut(s)	248
BmsI	GCATC	2 cut(s)	332, 596
Bpu1102I	GCTNAGC	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	548
BsaWI	WCCGGW	3 cut(s)	529, 569, 576
Bsc4I	CCNNNNNNNGG	5 cut(s)	536, 576, 583, 604, 611
Bse118I	RCCGGY	2 cut(s)	543, 569
Bse1I	ACTGG	4 cut(s)	541, 567, 621, 628
Bse3DI	GCAATG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	3 cut(s)	288, 508, 587
BseLI	CCNNNNNNNGG	5 cut(s)	536, 576, 583, 604, 611
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	4 cut(s)	541, 567, 621, 628
BseX3I	CGGCCG	1 cut(s)	545
Bsh1236I	CGCG	2 cut(s)	550, 559
Bsh1285I	CGRYCG	1 cut(s)	548
BshFI	GGCC	2 cut(s)	543, 547
BshTI	ACCGGT	1 cut(s)	569
BsiEI	CGRYCG	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	7 cut(s)	530, 544, 570, 577, 584, 605, 631
BslI	CCNNNNNNNGG	5 cut(s)	536, 576, 583, 604, 611
BsmAI	GTCTC	1 cut(s)	558
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	543, 547
Bso31I	GGTCTC	1 cut(s)	558
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp1720I	GCTNAGC	1 cut(s)	152
BspACI	CCGC	3 cut(s)	548, 550, 557
BspANI	GGCC	2 cut(s)	543, 547
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	2 cut(s)	550, 559
BspLI	GGNNCC	1 cut(s)	248
BspMAI	CTGCAG	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	558
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	2 cut(s)	543, 569
BsrI	ACTGG	4 cut(s)	541, 567, 621, 628
BssAI	RCCGGY	2 cut(s)	543, 569
BssECI	CCNNGG	1 cut(s)	548
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	3 cut(s)	152, 270, 663
BstDSI	CCRYGG	1 cut(s)	548
BstEII	GGTNACC	2 cut(s)	565, 572
BstF5I	GGATG	3 cut(s)	288, 508, 587
BstFNI	CGCG	2 cut(s)	550, 559
BstMAI	GTCTC	1 cut(s)	558
BstMCI	CGRYCG	1 cut(s)	548
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 556
BstNSI	RCATGY	2 cut(s)	238, 425
BstPI	GGTNACC	2 cut(s)	565, 572
BstSFI	CTRYAG	2 cut(s)	293, 609
BstUI	CGCG	2 cut(s)	550, 559
BstZI	CGGCCG	1 cut(s)	545
BsuRI	GGCC	2 cut(s)	543, 547
BtgI	CCRYGG	1 cut(s)	548
BtsCI	GGATG	3 cut(s)	288, 508, 587
Cac8I	GCNNGC	1 cut(s)	545
Cfr10I	RCCGGY	2 cut(s)	543, 569
Cfr42I	CCGCGG	1 cut(s)	551
CspAI	ACCGGT	1 cut(s)	569
CviAII	CATG	4 cut(s)	235, 347, 422, 478
CviJI	RGCY	8 cut(s)	119, 249, 385, 488, 543, 547, 608, 634
CviKI_1	RGCY	8 cut(s)	119, 249, 385, 488, 543, 547, 608, 634
DdeI	CTNAG	3 cut(s)	152, 270, 663
EaeI	YGGCCR	2 cut(s)	541, 545
EagI	CGGCCG	1 cut(s)	545
EclXI	CGGCCG	1 cut(s)	545
Eco31I	GGTCTC	1 cut(s)	558
Eco52I	CGGCCG	1 cut(s)	545
Eco91I	GGTNACC	2 cut(s)	565, 572
EcoO65I	GGTNACC	2 cut(s)	565, 572
FaeI	CATG	4 cut(s)	238, 350, 425, 481
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FatI	CATG	4 cut(s)	234, 346, 421, 477
Fnu4HI	GCNGC	1 cut(s)	548
FokI	GGATG	3 cut(s)	275, 495, 574
FseI	GGCCGGCC	1 cut(s)	547
Fsp4HI	GCNGC	1 cut(s)	548
FspBI	CTAG	2 cut(s)	401, 485
GluI	GCNGC	1 cut(s)	548
HaeIII	GGCC	2 cut(s)	543, 547
HapII	CCGG	7 cut(s)	530, 544, 570, 577, 584, 605, 631
Hin1II	CATG	4 cut(s)	238, 350, 425, 481
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	4 cut(s)	461, 580, 601, 627
HpaII	CCGG	7 cut(s)	530, 544, 570, 577, 584, 605, 631
HphI	GGTGA	4 cut(s)	544, 577, 584, 631
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	3 cut(s)	273, 592, 639
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	2 cut(s)	107, 350
HpyCH4V	TGCA	3 cut(s)	295, 323, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 556
HpyF3I	CTNAG	3 cut(s)	152, 270, 663
Hsp92II	CATG	4 cut(s)	238, 350, 425, 481
KroI	GCCGGC	1 cut(s)	543
KroNI	GCCGGC	1 cut(s)	545
KspI	CCGCGG	1 cut(s)	551
LmnI	GCTCC	2 cut(s)	246, 532
LweI	GCATC	2 cut(s)	332, 596
MaeI	CTAG	2 cut(s)	401, 485
MaeIII	GTNAC	4 cut(s)	532, 565, 572, 619
MfeI	CAATTG	1 cut(s)	492
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	4 cut(s)	100, 204, 492, 640
MnlI	CCTC	2 cut(s)	291, 522
MroNI	GCCGGC	1 cut(s)	543
MroXI	GAANNNNTTC	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	550
MspI	CCGG	7 cut(s)	530, 544, 570, 577, 584, 605, 631
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	146
MvnI	CGCG	2 cut(s)	550, 559
MwoI	GCNNNNNNNGC	2 cut(s)	425, 556
NaeI	GCCGGC	1 cut(s)	545
NgoMIV	GCCGGC	1 cut(s)	543
NlaIII	CATG	4 cut(s)	238, 350, 425, 481
NlaIV	GGNNCC	1 cut(s)	248
NmuCI	GTSAC	4 cut(s)	532, 565, 572, 619
NspI	RCATGY	2 cut(s)	238, 425
PciI	ACATGT	1 cut(s)	421
PctI	GAATGC	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	4 cut(s)	461, 580, 601, 627
PinAI	ACCGGT	1 cut(s)	569
PkrI	GCNGC	1 cut(s)	549
PscI	ACATGT	1 cut(s)	421
PspEI	GGTNACC	2 cut(s)	565, 572
PspN4I	GGNNCC	1 cut(s)	248
PstI	CTGCAG	1 cut(s)	297
RigI	GGCCGGCC	1 cut(s)	547
RseI	CAYNNNNRTG	1 cut(s)	351
SacII	CCGCGG	1 cut(s)	551
SatI	GCNGC	1 cut(s)	548
SduI	GDGCHC	1 cut(s)	529
SetI	ASST	6 cut(s)	96, 219, 302, 342, 364, 520
SfaNI	GCATC	2 cut(s)	332, 596
SfcI	CTRYAG	2 cut(s)	293, 609
Sfr303I	CCGCGG	1 cut(s)	551
SgrBI	CCGCGG	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	4 cut(s)	100, 204, 492, 640
SsiI	CCGC	3 cut(s)	548, 550, 557
SspMI	CTAG	2 cut(s)	401, 485
TaqI	TCGA	2 cut(s)	169, 326
TasI	AATT	4 cut(s)	100, 204, 492, 640
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	4 cut(s)	461, 580, 601, 627
TseFI	GTSAC	4 cut(s)	532, 565, 572, 619
Tsp45I	GTSAC	4 cut(s)	532, 565, 572, 619
TspDTI	ATGAA	3 cut(s)	332, 359, 369
XapI	RAATTY	1 cut(s)	640
XceI	RCATGY	2 cut(s)	238, 425
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	2 cut(s)	401, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.