RLG00000032079

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018392
Physical Location & Seq
Forward (+)
10716076 .. 10716783
708 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032079

Sequence Viewer

Length: 345 bp
ATGGATGGAGACGCCTATGACGACGTTCCAGTAGCAAGAGATGTTACTTATGAAGAATCTCCCATCTGGACAGAGTCTCACTTTTGGATCAGACTCTCATCTCTCAAGCATTTGCAGAAAAGGAAGAAGCACACTGACCTTTTTACAGAGGTTCTAGAGGATTGGAGTGTGCCAAAACCTCAGCAGCCGGCAATTATTGCACAATTGTTTCAGGTGGTTGATGGAGCTTCCCCCAACTTGTCTATCATTGTCGCCGTGCGCAGCCTCATTCTGCAGTTGCGCATTGTGAGCAGCTTTGCCTACTCTTCAAGTCCAGCCTTTAGAGACCTCCCCTGCCCGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.91

Weight (kDa)

5.48

Isoelectric Point (pI)

65.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018392)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05601
rosa_chinensis RchiOBHm_Chr5g0014071
rosa_laevigata RLG00000032079
rosa_multiflora Rmu_sc0007767.1_g000009
rosa_rugosa Rorug05G0015300 Rorug05G0015400
rosa_samantha Rh5AG109400 Rh5BG106200 Rh5DG104900
rosa_wichuraiana Rw5G009550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 260, 281
AclWI GGATC 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 12
AgsI TTSAA 1 cut(s) 309
AluBI AGCT 2 cut(s) 227, 294
AluI AGCT 2 cut(s) 227, 294
Alw26I GTCTC 3 cut(s) 3, 81, 318
AlwI GGATC 1 cut(s) 95
ApeKI GCWGC 3 cut(s) 184, 261, 291
AspLEI GCGC 2 cut(s) 261, 282
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 196, 273, 303
BccI CCATC 2 cut(s) 71, 215
BceAI ACGGC 1 cut(s) 239
BcoDI GTCTC 3 cut(s) 3, 81, 318
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 272
BisI GCNGC 3 cut(s) 185, 262, 292
BlsI GCNGC 3 cut(s) 186, 263, 293
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 318
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 3 cut(s) 196, 273, 303
BsiSI CCGG 1 cut(s) 188
BsmAI GTCTC 3 cut(s) 3, 81, 318
BsmBI CGTCTC 1 cut(s) 3
Bso31I GGTCTC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 187
BssMI GATC 1 cut(s) 87
BssNI GRCGYC 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 310
BstACI GRCGYC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 2 cut(s) 261, 282
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 3 cut(s) 3, 81, 318
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 197, 288
BstSFI CTRYAG 1 cut(s) 272
BstV1I GCAGC 3 cut(s) 196, 273, 303
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 2 cut(s) 261, 282
Cfr10I RCCGGY 1 cut(s) 187
CseI GACGC 1 cut(s) 20
CviJI RGCY 5 cut(s) 187, 227, 264, 294, 317
CviKI_1 RGCY 5 cut(s) 187, 227, 264, 294, 317
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 318
Esp3I CGTCTC 1 cut(s) 3
FaiI YATR 2 cut(s) 18, 51
Fnu4HI GCNGC 3 cut(s) 185, 262, 292
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 185, 262, 292
FspBI CTAG 1 cut(s) 155
FspI TGCGCA 2 cut(s) 260, 281
GlaI GCGC 2 cut(s) 260, 281
GluI GCNGC 3 cut(s) 185, 262, 292
HapII CCGG 1 cut(s) 188
HgaI GACGC 1 cut(s) 20
HhaI GCGC 2 cut(s) 261, 282
Hin1I GRCGYC 1 cut(s) 12
Hin6I GCGC 2 cut(s) 259, 280
HinP1I GCGC 2 cut(s) 259, 280
HinfI GANTC 3 cut(s) 56, 74, 93
HpaII CCGG 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 67, 155
Hpy99I CGWCG 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 3 cut(s) 115, 200, 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 288
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 24
Hsp92I GRCGYC 1 cut(s) 12
HspAI GCGC 2 cut(s) 259, 280
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 5 cut(s) 42, 52, 197, 201, 327
Lsp1109I GCAGC 3 cut(s) 196, 273, 303
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 3 cut(s) 65, 136, 297
MfeI CAATTG 1 cut(s) 203
MluCI AATT 2 cut(s) 192, 203
MlyI GAGTC 2 cut(s) 83, 87
MnlI CCTC 5 cut(s) 142, 151, 189, 275, 338
MroNI GCCGGC 1 cut(s) 187
MspI CCGG 1 cut(s) 188
MunI CAATTG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 197, 288
NaeI GCCGGC 1 cut(s) 189
NdeII GATC 1 cut(s) 87
NgoMIV GCCGGC 1 cut(s) 187
NsbI TGCGCA 2 cut(s) 260, 281
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PdiI GCCGGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 56
PflFI GACNNNGTC 1 cut(s) 73
PkrI GCNGC 3 cut(s) 186, 263, 293
PleI GAGTC 2 cut(s) 82, 87
PpsI GAGTC 2 cut(s) 82, 87
PstI CTGCAG 1 cut(s) 276
PsyI GACNNNGTC 1 cut(s) 73
SatI GCNGC 3 cut(s) 185, 262, 292
Sau3AI GATC 1 cut(s) 87
SchI GAGTC 2 cut(s) 83, 87
SetI ASST 8 cut(s) 27, 141, 153, 181, 216, 229, 296, 330
SfcI CTRYAG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 2 cut(s) 192, 203
SspMI CTAG 1 cut(s) 155
TaiI ACGT 1 cut(s) 27
TasI AATT 2 cut(s) 192, 203
TfiI GAWTC 1 cut(s) 56
TscAI CASTG 1 cut(s) 139
TseI GCWGC 3 cut(s) 184, 261, 291
TspDTI ATGAA 1 cut(s) 66
TspRI CASTG 1 cut(s) 139
Tth111I GACNNNGTC 1 cut(s) 73
XbaI TCTAGA 1 cut(s) 154
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.