Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0018392

Physical Location & Seq

Genomic Coordinates Forward (+)

1044547 .. 1047504

Gene Structure 2958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0015400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2010 bp

ATGTCGTCGACTTATAAGACAAGATCCTTTTGTTACTATCTCTTCTTGAAAAGGAAGTGGGAGAGGATGAAAGAATTTTACTCGGATAACTACCTAAATATATGTTTGCCTCATACAGTGTTCAAGGATACTGCAGTTCATGTTGCAGTGTACAGTGACAACGAAGAACTGGTGAAGTCTCTGCTTGACATGGTGTATAGAGAATACGCAGATTACTTTTTGGGAGGACCAGCAATATTTCAGAAACAGAATACATTTGGAAATACACCTCTTCACGAGGCAGCTTCGATAGGAAATGTCGACATGGTGAAGATCATAATGCATTATGATCCGAAGCCACTGAATACTAAAAACAAGAGAGGTGAAACACCCTTTTTTACGGCCGCCGTATATGGCAACACCAATGTGATCAGGCATTTGGCGCCGGAGATCAAGAAAGATGCTGATGATCATGAGAGGCCATATTTCAATCATACCTCATCTCGCGGCTCCACCATGCTTCATGAAGCTATTCGCGGCTATTACTTTGAAACGGCTCTGGAGTTAGTAAAACCAGAATACCACATATGGACAGATCAGAAGGATTCAGATGACATAACCTGTTTTCAGCTGCTAGCTAACATTCCATCTGCTTTTGAGAGTGGATATTCCTTTGGCATATTGGAGAAACTGATCTATCTTTGCCTTCCGGTAGTTGATTACAGCAAAAACAAGGACGAAACCAACAGTGTATCTCAGGTCCCTCCAACTCCAAATACAGATTTGGAGCGTGGCGATCACAGCAAAGACAAGGATGGAAACAAAAATGTATCACATTTCCCTCCAAGTCCAAACACAGCCTTCCAGAAGATCACAGCAAAAATGTACGTCACCTTTTGGAGCATCATTGCTAAAGGGTTCCCATCTATTAAAGATCTGTGGGACACAAAGAAGAAGCACGGCATAGTGGTGGAGCTTTCAAAAATTCTGGCTGGAGGAGACAAGTCATGGCAGGTTAACAACACTGATGGTCAAAATGACACTCCACTTCTGGCTGCTGCTAGGAATGGGATTATAGAAATCATTGAGGCCATTTTTAATCTGTTCCCACAGGCCATCGAGCATGAAAACCACAAAAGAGAGAACATATTTCATGTTGTTGTGGAGCATCGGAGGAGACAGCTTTTGGAATATCTTCTCCAAACTTGTCATGTTTCATATCCGAGGCTCCTGTGGAAAATCAATCAAGACGGTGACGGCATTTTGCATAAAGCAGCATATAAGAGTCACTATTCCTCAAGGGAGAGGCCAGGGGAAGCCCTTCGCTTGCAGTCAGATATTCACTGGTTTGAGCGAGTGAAGAAATTGGTGCCTCCACATCACATCAACCATCTTAATCATCATGACAATTTGACACCTCATGCTTTGTTCACAAAAGAGCATAAAGAACTGGTGAAGAATGGCCAAGAATGGTTAATCAGAACAACAAACTCTTGCATTATAGTTGCAGTTCTTATTGCAACGGTTGCTTTTACAAGCATCTACACCGTGCCTGGAGGTTCGGATCCAAAGACAGGCAAGCCCTTGCTCCTAACCAAAACACCATTCACTGTCTTCACAGCATCTGATGTGGCATCCCTTTGTTTTGCCTTCACCTCTGTGGTGGTGTTTCTATCCATCAGCACATCGAAAATGAATGAGAGAGATTTCCGGAGGGCTCTGCCATTGAAGCTTGTTTTGGGGTTAAGCATGCTGTTTTGGTCTGTGGCAGCATTGATGGTTGGTTTTGCTGCTACTCTTGACATTACAATAAACCAGAGGCTGCATGAGGCTACTGCTCCGATCATTACCATTGCTTGTTTTCCAGTTGCCTTTTTCCTCCTTCTGCAGCTTCCTCTCTATTTCAATATTACTTGGTTTACGATAAAGGACTTGCTGCAAACCCTAGTTGATTGTATTCCTCAACAAAAATGTAAGAGCTCTAGCTGCATTATGCGCTATCAAGTGAGCTTTGGTCATTCATTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

669

Amino Acids

76.37

Weight (kDa)

8.39

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	37 - 111	7.6e-08	Ankyrin repeats (3 copies)
Ank_4	PF13637	47 - 104	2.5e-06	Ankyrin repeats (many copies)
PGG	PF13962	483 - 593	3.7e-23	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018392)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05601
rosa_chinensis	RchiOBHm_Chr5g0014071
rosa_laevigata	RLG00000032079
rosa_multiflora	Rmu_sc0007767.1_g000009
rosa_rugosa	Rorug05G0015300 Rorug05G0015400
rosa_samantha	Rh5AG109400 Rh5BG106200 Rh5DG104900
rosa_wichuraiana	Rw5G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
Acc36I	ACCTGC	1 cut(s)	982
AccB1I	GGYRCC	2 cut(s)	421, 1348
AccI	GTMKAC	2 cut(s)	8, 300
AccII	CGCG	2 cut(s)	486, 516
AccIII	TCCGGA	1 cut(s)	1689
AciI	CCGC	3 cut(s)	384, 486, 516
AclWI	GGATC	4 cut(s)	18, 323, 1538, 1551
AcoI	YGGCCR	2 cut(s)	381, 1441
AcsI	RAATTY	2 cut(s)	74, 963
AcyI	GRCGYC	1 cut(s)	422
AfaI	GTAC	2 cut(s)	152, 866
AfiI	CCNNNNNNNGG	1 cut(s)	1553
AgsI	TTSAA	7 cut(s)	49, 124, 469, 530, 960, 1708, 1885
AjnI	CCWGG	2 cut(s)	1288, 1531
AjuI	GAANNNNNNNTTGG	4 cut(s)	1568, 1600, 1700, 1732
AleI	CACNNNNGTG	2 cut(s)	404, 1637
Alw21I	GWGCWC	1 cut(s)	1961
Alw26I	GTCTC	3 cut(s)	183, 972, 1150
AlwI	GGATC	4 cut(s)	18, 323, 1538, 1551
AlwNI	CAGNNNCTG	2 cut(s)	1604, 1801
Aor13HI	TCCGGA	1 cut(s)	1689
AoxI	GGCC	6 cut(s)	381, 458, 1068, 1092, 1286, 1441
ApoI	RAATTY	2 cut(s)	74, 963
Asp700I	GAANNNNTTC	3 cut(s)	510, 1173, 1299
AspLEI	GCGC	2 cut(s)	424, 1977
AspS9I	GGNCC	2 cut(s)	227, 739
AsuHPI	GGTGA	7 cut(s)	184, 319, 374, 862, 1244, 1444, 1624
AsuNHI	GCTAGC	1 cut(s)	613
AvaII	GGWCC	2 cut(s)	227, 739
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BalI	TGGCCA	1 cut(s)	1443
BamHI	GGATCC	1 cut(s)	1543
BanI	GGYRCC	2 cut(s)	421, 1348
BanII	GRGCYC	2 cut(s)	1699, 1961
BauI	CACGAG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	1585
Bbv12I	GWGCWC	1 cut(s)	1961
BccI	CCATC	8 cut(s)	634, 788, 910, 1001, 1103, 1377, 1664, 1750
BceAI	ACGGC	5 cut(s)	371, 396, 549, 955, 1252
BciT130I	CCWGG	2 cut(s)	1290, 1533
BciVI	GTATCC	1 cut(s)	121
BclI	TGATCA	2 cut(s)	408, 448
BcoDI	GTCTC	3 cut(s)	183, 972, 1150
BfaI	CTAG	4 cut(s)	614, 1041, 1925, 1962
BfmI	CTRYAG	2 cut(s)	132, 1865
BfoI	RGCGCY	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	982
BfuI	GTATCC	1 cut(s)	121
BglII	AGATCT	1 cut(s)	913
Bme1390I	CCNGG	2 cut(s)	1290, 1533
Bme18I	GGWCC	2 cut(s)	227, 739
BmgT120I	GGNCC	2 cut(s)	227, 739
BmiI	GGNNCC	7 cut(s)	423, 490, 741, 899, 1208, 1350, 1545
BmrFI	CCNGG	2 cut(s)	1290, 1533
BmsI	GCATC	6 cut(s)	430, 891, 1156, 1527, 1610, 1622
BmtI	GCTAGC	1 cut(s)	617
BpiI	GAAGAC	1 cut(s)	1585
BpmI	CTGGAG	3 cut(s)	560, 993, 1554
BpuEI	CTTGAG	1 cut(s)	1261
BsaHI	GRCGYC	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	1202, 1289
BsaWI	WCCGGW	2 cut(s)	688, 1689
Bsc4I	CCNNNNNNNGG	1 cut(s)	1553
Bse1I	ACTGG	4 cut(s)	174, 1328, 1434, 1844
Bse3DI	GCAATG	2 cut(s)	885, 1830
BseAI	TCCGGA	1 cut(s)	1689
BseBI	CCWGG	2 cut(s)	1290, 1533
BseDI	CCNNGG	2 cut(s)	1202, 1289
BseGI	GGATG	3 cut(s)	72, 799, 1613
BseLI	CCNNNNNNNGG	1 cut(s)	1553
BseMI	GCAATG	2 cut(s)	885, 1830
BseMII	CTCAG	1 cut(s)	749
BseNI	ACTGG	4 cut(s)	174, 1328, 1434, 1844
BseRI	GAGGAG	2 cut(s)	990, 1168
BseX3I	CGGCCG	1 cut(s)	381
Bsh1236I	CGCG	2 cut(s)	486, 516
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	6 cut(s)	383, 460, 1070, 1094, 1288, 1443
BshNI	GGYRCC	2 cut(s)	421, 1348
BsiEI	CGRYCG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	1961
BsiSI	CCGG	3 cut(s)	425, 689, 1690
BslFI	GGGAC	2 cut(s)	725, 935
BslI	CCNNNNNNNGG	1 cut(s)	1553
BsmAI	GTCTC	3 cut(s)	183, 972, 1150
BsmFI	GGGAC	2 cut(s)	725, 935
BsnI	GGCC	6 cut(s)	383, 460, 1070, 1094, 1288, 1443
Bsp1286I	GDGCHC	2 cut(s)	1699, 1961
Bsp13I	TCCGGA	1 cut(s)	1689
Bsp1407I	TGTACA	1 cut(s)	150
BspACI	CCGC	3 cut(s)	384, 486, 516
BspANI	GGCC	6 cut(s)	383, 460, 1070, 1094, 1288, 1443
BspCNI	CTCAG	1 cut(s)	748
BspEI	TCCGGA	1 cut(s)	1689
BspFNI	CGCG	2 cut(s)	486, 516
BspHI	TCATGA	3 cut(s)	451, 502, 1381
BspLI	GGNNCC	7 cut(s)	423, 490, 741, 899, 1208, 1350, 1545
BspMAI	CTGCAG	2 cut(s)	136, 1869
BspMI	ACCTGC	1 cut(s)	982
BspOI	GCTAGC	1 cut(s)	617
BspPI	GGATC	4 cut(s)	18, 323, 1538, 1551
BspT107I	GGYRCC	2 cut(s)	421, 1348
BsrDI	GCAATG	2 cut(s)	885, 1830
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	4 cut(s)	174, 1328, 1434, 1844
BssECI	CCNNGG	2 cut(s)	1202, 1289
BssNI	GRCGYC	1 cut(s)	422
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	2 cut(s)	1290, 1533
Bst4CI	ACNGT	7 cut(s)	118, 155, 728, 1232, 1504, 1528, 1591
Bst6I	CTCTTC	2 cut(s)	47, 276
BstACI	GRCGYC	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	1505
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	4 cut(s)	615, 1307, 1559, 1730
BstDEI	CTNAG	1 cut(s)	735
BstF5I	GGATG	3 cut(s)	72, 799, 1613
BstFNI	CGCG	2 cut(s)	486, 516
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	2 cut(s)	424, 1977
BstMAI	GTCTC	3 cut(s)	183, 972, 1150
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	6 cut(s)	421, 780, 1505, 1708, 1965, 1974
BstNI	CCWGG	2 cut(s)	1290, 1533
BstNSI	RCATGY	1 cut(s)	1732
BstSCI	CCNGG	2 cut(s)	1288, 1531
BstSFI	CTRYAG	2 cut(s)	132, 1865
BstUI	CGCG	2 cut(s)	486, 516
BstV2I	GAAGAC	1 cut(s)	1585
BstX2I	RGATCY	3 cut(s)	23, 913, 1543
BstYI	RGATCY	3 cut(s)	23, 913, 1543
BstZI	CGGCCG	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	6 cut(s)	383, 460, 1070, 1094, 1288, 1443
BtsCI	GGATG	3 cut(s)	72, 799, 1613
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	8 cut(s)	123, 153, 160, 338, 733, 1002, 1321, 1587
BveI	ACCTGC	1 cut(s)	982
Cac8I	GCNNGC	4 cut(s)	615, 1307, 1559, 1730
CaiI	CAGNNNCTG	2 cut(s)	1604, 1801
CciI	TCATGA	3 cut(s)	451, 502, 1381
CfoI	GCGC	2 cut(s)	424, 1977
Cfr13I	GGNCC	2 cut(s)	227, 739
Csp6I	GTAC	2 cut(s)	151, 865
CviQI	GTAC	2 cut(s)	151, 865
DdeI	CTNAG	1 cut(s)	735
DinI	GGCGCC	1 cut(s)	423
EaeI	YGGCCR	2 cut(s)	381, 1441
EagI	CGGCCG	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	47, 276
EarI	CTCTTC	2 cut(s)	47, 276
Ecl136II	GAGCTC	1 cut(s)	1959
EclXI	CGGCCG	1 cut(s)	381
Eco24I	GRGCYC	2 cut(s)	1699, 1961
Eco47I	GGWCC	2 cut(s)	227, 739
Eco52I	CGGCCG	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	1959
EcoICRI	GAGCTC	1 cut(s)	1959
EcoO109I	RGGNCCY	1 cut(s)	739
EcoRII	CCWGG	2 cut(s)	1288, 1531
EcoT22I	ATGCAT	1 cut(s)	324
EcoT38I	GRGCYC	2 cut(s)	1699, 1961
EgeI	GGCGCC	1 cut(s)	423
EheI	GGCGCC	1 cut(s)	423
FaqI	GGGAC	2 cut(s)	725, 935
FauNDI	CATATG	1 cut(s)	566
FbaI	TGATCA	2 cut(s)	408, 448
FblI	GTMKAC	2 cut(s)	8, 300
FokI	GGATG	3 cut(s)	79, 806, 1600
FriOI	GRGCYC	2 cut(s)	1699, 1961
FspBI	CTAG	4 cut(s)	614, 1041, 1925, 1962
GlaI	GCGC	2 cut(s)	423, 1976
GsuI	CTGGAG	3 cut(s)	560, 993, 1554
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	6 cut(s)	383, 460, 1070, 1094, 1288, 1443
HapII	CCGG	3 cut(s)	425, 689, 1690
HhaI	GCGC	2 cut(s)	424, 1977
Hin1I	GRCGYC	1 cut(s)	422
Hin6I	GCGC	2 cut(s)	422, 1975
HinP1I	GCGC	2 cut(s)	422, 1975
HincII	GTYRAC	3 cut(s)	9, 301, 997
HindII	GTYRAC	3 cut(s)	9, 301, 997
HindIII	AAGCTT	1 cut(s)	1709
HinfI	GANTC	2 cut(s)	584, 1264
HpaI	GTTAAC	1 cut(s)	997
HpaII	CCGG	3 cut(s)	425, 689, 1690
HphI	GGTGA	7 cut(s)	184, 319, 374, 862, 1244, 1444, 1624
Hpy166II	GTNNAC	6 cut(s)	9, 151, 301, 997, 1410, 1899
Hpy8I	GTNNAC	6 cut(s)	9, 151, 301, 997, 1410, 1899
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	6 cut(s)	574, 695, 850, 1310, 1639, 1871
HpyCH4III	ACNGT	7 cut(s)	118, 155, 728, 1232, 1504, 1528, 1591
HpyCH4IV	ACGT	1 cut(s)	867
HpyF10VI	GCNNNNNNNGC	6 cut(s)	421, 780, 1505, 1708, 1965, 1974
HpyF3I	CTNAG	1 cut(s)	735
HpySE526I	ACGT	1 cut(s)	867
Hsp92I	GRCGYC	1 cut(s)	422
HspAI	GCGC	2 cut(s)	422, 1975
KasI	GGCGCC	1 cut(s)	421
Kpn2I	TCCGGA	1 cut(s)	1689
Ksp22I	TGATCA	2 cut(s)	408, 448
KspAI	GTTAAC	1 cut(s)	997
LmnI	GCTCC	8 cut(s)	494, 766, 879, 952, 1144, 1212, 1572, 1822
LweI	GCATC	6 cut(s)	430, 891, 1156, 1527, 1610, 1622
MaeI	CTAG	4 cut(s)	614, 1041, 1925, 1962
MaeII	ACGT	1 cut(s)	867
MaeIII	GTNAC	5 cut(s)	32, 155, 868, 1232, 1265
MflI	RGATCY	3 cut(s)	23, 913, 1543
MhlI	GDGCHC	2 cut(s)	1699, 1961
MlsI	TGGCCA	1 cut(s)	1443
MluCI	AATT	4 cut(s)	74, 963, 1343, 1387
MluNI	TGGCCA	1 cut(s)	1443
Mly113I	GGCGCC	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	1273
MmeI	TCCRAC	1 cut(s)	770
Mox20I	TGGCCA	1 cut(s)	1443
Mph1103I	ATGCAT	1 cut(s)	324
MroI	TCCGGA	1 cut(s)	1689
MroXI	GAANNNNTTC	3 cut(s)	510, 1173, 1299
MscI	TGGCCA	1 cut(s)	1443
MseI	TTAA	7 cut(s)	909, 996, 1077, 1374, 1454, 1724, 2008
MslI	CAYNNNNRTG	3 cut(s)	404, 947, 1637
Msp20I	TGGCCA	1 cut(s)	1443
MspA1I	CMGCKG	1 cut(s)	610
MspI	CCGG	3 cut(s)	425, 689, 1690
MspR9I	CCNGG	2 cut(s)	1290, 1533
MvaI	CCWGG	2 cut(s)	1290, 1533
MvnI	CGCG	2 cut(s)	486, 516
MwoI	GCNNNNNNNGC	6 cut(s)	421, 780, 1505, 1708, 1965, 1974
NarI	GGCGCC	1 cut(s)	422
NdeI	CATATG	1 cut(s)	566
NheI	GCTAGC	1 cut(s)	613
NlaIV	GGNNCC	7 cut(s)	423, 490, 741, 899, 1208, 1350, 1545
NmuCI	GTSAC	4 cut(s)	155, 868, 1232, 1265
NsiI	ATGCAT	1 cut(s)	324
NspI	RCATGY	1 cut(s)	1732
OliI	CACNNNNGTG	2 cut(s)	404, 1637
PaeI	GCATGC	1 cut(s)	1732
PagI	TCATGA	3 cut(s)	451, 502, 1381
PdmI	GAANNNNTTC	3 cut(s)	510, 1173, 1299
PfeI	GAWTC	1 cut(s)	584
PleI	GAGTC	1 cut(s)	1272
PluTI	GGCGCC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	1272
PpuMI	RGGWCCY	1 cut(s)	739
PsiI	TTATAA	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	1961
Psp5II	RGGWCCY	1 cut(s)	739
Psp6I	CCWGG	2 cut(s)	1288, 1531
PspGI	CCWGG	2 cut(s)	1288, 1531
PspN4I	GGNNCC	7 cut(s)	423, 490, 741, 899, 1208, 1350, 1545
PspPI	GGNCC	2 cut(s)	227, 739
PspPPI	RGGWCCY	1 cut(s)	739
PstI	CTGCAG	2 cut(s)	136, 1869
PstNI	CAGNNNCTG	2 cut(s)	1604, 1801
PsuI	RGATCY	3 cut(s)	23, 913, 1543
PvuII	CAGCTG	1 cut(s)	610
RsaI	GTAC	2 cut(s)	152, 866
RsaNI	GTAC	2 cut(s)	151, 865
RseI	CAYNNNNRTG	3 cut(s)	404, 947, 1637
SacI	GAGCTC	1 cut(s)	1961
SalI	GTCGAC	2 cut(s)	7, 299
SaqAI	TTAA	7 cut(s)	909, 996, 1077, 1374, 1454, 1724, 2008
Sau96I	GGNCC	2 cut(s)	227, 739
SchI	GAGTC	1 cut(s)	1273
ScrFI	CCNGG	2 cut(s)	1290, 1533
SduI	GDGCHC	2 cut(s)	1699, 1961
SfaNI	GCATC	6 cut(s)	430, 891, 1156, 1527, 1610, 1622
SfcI	CTRYAG	2 cut(s)	132, 1865
SfoI	GGCGCC	1 cut(s)	423
SinI	GGWCC	2 cut(s)	227, 739
SmiMI	CAYNNNNRTG	3 cut(s)	404, 947, 1637
SmlI	CTYRAG	1 cut(s)	1276
SmoI	CTYRAG	1 cut(s)	1276
SphI	GCATGC	1 cut(s)	1732
Sse9I	AATT	4 cut(s)	74, 963, 1343, 1387
SsiI	CCGC	3 cut(s)	384, 486, 516
SspDI	GGCGCC	1 cut(s)	421
SspI	AATATT	2 cut(s)	237, 1888
SspMI	CTAG	4 cut(s)	614, 1041, 1925, 1962
SstI	GAGCTC	1 cut(s)	1961
StyD4I	CCNGG	2 cut(s)	1288, 1531
TaaI	ACNGT	7 cut(s)	118, 155, 728, 1232, 1504, 1528, 1591
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	5 cut(s)	8, 287, 300, 1098, 1667
TasI	AATT	4 cut(s)	74, 963, 1343, 1387
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	3 cut(s)	386, 489, 519
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	7 cut(s)	909, 996, 1077, 1374, 1454, 1724, 2008
Tru9I	TTAA	7 cut(s)	909, 996, 1077, 1374, 1454, 1724, 2008
TscAI	CASTG	8 cut(s)	123, 153, 160, 345, 733, 1009, 1328, 1594
TseFI	GTSAC	4 cut(s)	155, 868, 1232, 1265
Tsp45I	GTSAC	4 cut(s)	155, 868, 1232, 1265
TspDTI	ATGAA	9 cut(s)	83, 128, 491, 519, 1119, 1121, 1185, 1688, 1989
TspRI	CASTG	8 cut(s)	123, 153, 160, 345, 733, 1009, 1328, 1594
VpaK11BI	GGWCC	2 cut(s)	227, 739
XapI	RAATTY	2 cut(s)	74, 963
XceI	RCATGY	1 cut(s)	1732
XmiI	GTMKAC	2 cut(s)	8, 300
XmnI	GAANNNNTTC	3 cut(s)	510, 1173, 1299
XspI	CTAG	4 cut(s)	614, 1041, 1925, 1962
Zsp2I	ATGCAT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.