Rmu_sc0007767.1_g000009

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007767.1
OG0018392
Physical Location & Seq
Forward (+)
44656 .. 45627
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007767.1_g000009.1.cds

Sequence Viewer

Length: 972 bp
atgtctaccgagagacactactttcttagtgaggtgcggcaggaaaagacaattgatttcttaaatgaaacccgaacaggaatggttctgctcagattgcagctctacaagcttaccgggagtggttggatggatggagacgcctatgacgacgttccagttgcaagagatgttacttatgaagaatctcccatctggacagagtctcacttttggatcagcctctcatctctcaagcacttgccaaaaaggaagatgcacactgagctttttacaaaggttctagaggattggagtgtgccaaaacctcagcagccagctattattgcacaattgtttcaggtggttgatggagcttcccccaagttgtctatcattgtcgccgtgcgcagcctcattctgcagttgtgcattgtgagcagctttggttatgatgcaacggagctcaatcctacagctgaatcatccacattcgttgaggagggtttggagaaagtgggccttgaaaactcgggagctacagaacacaagaaaacctcttcatgtgttttgtgcatggagggctttttcgaatctgacaacggtgctcaacaacttactcgcttgccctgctcgcactattatcatggacgctgcttacttcagtggccatcagagataagtagctcgtgtcccttgtgcgaaaagccaaagtcgaaatttcatgcttgtcggcaattttgggttcggatggtgaggaagcacgtgggtactgtgatatctgctctgattttttgccaatttttcaagcctactcttcaagtccagcctttagagacctcccctgcccgtcctaaaagctggaagcagagtctgcttgaaatggatgaaatgatgaccatgacggcaaccaaattggtaaacgatttccaatccggcaaactattgaagcaaattaagaaagaagagtggtggcaattcaagaaggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

323

Amino Acids

37.09

Weight (kDa)

7.1

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018392)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05601
rosa_chinensis RchiOBHm_Chr5g0014071
rosa_laevigata RLG00000032079
rosa_multiflora Rmu_sc0007767.1_g000009
rosa_rugosa Rorug05G0015300 Rorug05G0015400
rosa_samantha Rh5AG109400 Rh5BG106200 Rh5DG104900
rosa_wichuraiana Rw5G009550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 389
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 647
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 1 cut(s) 626
AcvI CACGTG 1 cut(s) 745
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 751
AgsI TTSAA 6 cut(s) 506, 787, 800, 860, 928, 961
Alw21I GWGCWC 2 cut(s) 447, 589
Alw26I GTCTC 4 cut(s) 7, 132, 210, 809
AlwI GGATC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 853
Ama87I CYCGRG 1 cut(s) 511
AoxI GGCC 2 cut(s) 499, 647
ApeKI GCWGC 5 cut(s) 100, 313, 390, 420, 633
ApoI RAATTY 1 cut(s) 698
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 499
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 745
AsuII TTCGAA 1 cut(s) 570
AvaI CYCGRG 1 cut(s) 511
BalI TGGCCA 1 cut(s) 649
BanII GRGCYC 1 cut(s) 447
BauI CACGAG 1 cut(s) 667
BbrPI CACGTG 1 cut(s) 745
Bbv12I GWGCWC 2 cut(s) 447, 589
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 5 cut(s) 112, 325, 402, 432, 620
BccI CCATC 6 cut(s) 124, 128, 200, 344, 658, 724
BceAI ACGGC 2 cut(s) 368, 900
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 4 cut(s) 7, 132, 210, 809
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 3 cut(s) 401, 453, 519
BisI GCNGC 6 cut(s) 38, 101, 314, 391, 421, 634
BlsI GCNGC 6 cut(s) 39, 102, 315, 392, 422, 635
Bme1390I CCNGG 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 499
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 246, 424
Bpu10I CCTNAGC 1 cut(s) 309
Bpu14I TTCGAA 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 745
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 809
Bse1I ACTGG 1 cut(s) 158
BseGI GGATG 5 cut(s) 135, 139, 464, 735, 871
BseMII CTCAG 3 cut(s) 106, 255, 323
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 5 cut(s) 112, 325, 402, 432, 620
BshFI GGCC 2 cut(s) 501, 649
BsiHKAI GWGCWC 2 cut(s) 447, 589
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 2 cut(s) 117, 915
BslFI GGGAC 1 cut(s) 657
BsmAI GTCTC 4 cut(s) 7, 132, 210, 809
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 657
BsnI GGCC 2 cut(s) 501, 649
Bso31I GGTCTC 1 cut(s) 809
BsoBI CYCGRG 1 cut(s) 511
Bsp119I TTCGAA 1 cut(s) 570
Bsp1286I GDGCHC 2 cut(s) 447, 589
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 1 cut(s) 37
BspANI GGCC 2 cut(s) 501, 649
BspCNI CTCAG 3 cut(s) 105, 256, 322
BspMAI CTGCAG 1 cut(s) 405
BspPI GGATC 1 cut(s) 224
BspT104I TTCGAA 1 cut(s) 570
BspTNI GGTCTC 1 cut(s) 809
BsrI ACTGG 1 cut(s) 158
BssMI GATC 1 cut(s) 216
BssNI GRCGYC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 667
Bst2BI CACGAG 1 cut(s) 667
Bst4CI ACNGT 2 cut(s) 584, 754
Bst6I CTCTTC 3 cut(s) 544, 801, 939
BstACI GRCGYC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 853
BstBAI YACGTR 1 cut(s) 745
BstBI TTCGAA 1 cut(s) 570
BstC8I GCNNGC 3 cut(s) 318, 605, 614
BstDEI CTNAG 4 cut(s) 26, 92, 264, 309
BstF5I GGATG 5 cut(s) 135, 139, 464, 735, 871
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 4 cut(s) 7, 132, 210, 809
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 9 cut(s) 97, 109, 265, 326, 417, 561, 609, 613, 853
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 3 cut(s) 401, 453, 519
BstV1I GCAGC 5 cut(s) 112, 325, 402, 432, 620
BsuRI GGCC 2 cut(s) 501, 649
BtsCI GGATG 5 cut(s) 135, 139, 464, 735, 871
BtsIMutI CAGTG 2 cut(s) 261, 650
Cac8I GCNNGC 3 cut(s) 318, 605, 614
CaiI CAGNNNCTG 1 cut(s) 853
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 499
CseI GACGC 2 cut(s) 149, 639
Csp6I GTAC 1 cut(s) 750
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 5 cut(s) 543, 556, 626, 704, 880
CviQI GTAC 1 cut(s) 750
DdeI CTNAG 4 cut(s) 26, 92, 264, 309
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EaeI YGGCCR 1 cut(s) 647
Eam1104I CTCTTC 3 cut(s) 544, 801, 939
EarI CTCTTC 3 cut(s) 544, 801, 939
Ecl136II GAGCTC 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 809
Eco32I GATATC 1 cut(s) 759
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 626
Eco72I CACGTG 1 cut(s) 745
Eco88I CYCGRG 1 cut(s) 511
EcoICRI GAGCTC 1 cut(s) 445
EcoRV GATATC 1 cut(s) 759
EcoT38I GRGCYC 1 cut(s) 447
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 5 cut(s) 546, 559, 629, 707, 883
FaiI YATR 8 cut(s) 147, 180, 432, 544, 557, 627, 705, 881
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 1 cut(s) 657
FatI CATG 5 cut(s) 542, 555, 625, 703, 879
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 6 cut(s) 38, 101, 314, 391, 421, 634
FokI GGATG 5 cut(s) 142, 146, 451, 742, 878
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 6 cut(s) 38, 101, 314, 391, 421, 634
FspBI CTAG 1 cut(s) 284
FspI TGCGCA 1 cut(s) 389
GlaI GCGC 1 cut(s) 389
GluI GCNGC 6 cut(s) 38, 101, 314, 391, 421, 634
HaeIII GGCC 2 cut(s) 501, 649
HapII CCGG 2 cut(s) 117, 915
HgaI GACGC 2 cut(s) 149, 639
HhaI GCGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 5 cut(s) 546, 559, 629, 707, 883
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 5 cut(s) 185, 203, 461, 572, 850
HpaII CCGG 2 cut(s) 117, 915
HphI GGTGA 1 cut(s) 745
Hpy166II GTNNAC 2 cut(s) 6, 901
Hpy188I TCNGA 5 cut(s) 95, 577, 655, 729, 768
Hpy188III TCNNGA 4 cut(s) 196, 284, 513, 961
Hpy8I GTNNAC 2 cut(s) 6, 901
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 958
HpyCH4III ACNGT 2 cut(s) 584, 754
HpyCH4IV ACGT 2 cut(s) 153, 744
HpyCH4V TGCA 8 cut(s) 100, 164, 259, 329, 403, 411, 437, 555
HpyF10VI GCNNNNNNNGC 9 cut(s) 97, 109, 265, 326, 417, 561, 609, 613, 853
HpyF3I CTNAG 4 cut(s) 26, 92, 264, 309
HpySE526I ACGT 2 cut(s) 153, 744
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 5 cut(s) 546, 559, 629, 707, 883
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 3 cut(s) 353, 442, 515
Lsp1109I GCAGC 5 cut(s) 112, 325, 402, 432, 620
LweI GCATC 2 cut(s) 246, 424
MaeI CTAG 1 cut(s) 284
MaeII ACGT 2 cut(s) 153, 744
MaeIII GTNAC 1 cut(s) 172
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 5 cut(s) 194, 265, 531, 788, 956
MfeI CAATTG 2 cut(s) 51, 332
MhlI GDGCHC 2 cut(s) 447, 589
MlsI TGGCCA 1 cut(s) 649
MluCI AATT 8 cut(s) 51, 332, 698, 716, 779, 893, 933, 956
MluNI TGGCCA 1 cut(s) 649
MlyI GAGTC 2 cut(s) 212, 859
MmeI TCCRAC 1 cut(s) 107
Mox20I TGGCCA 1 cut(s) 649
MscI TGGCCA 1 cut(s) 649
MseI TTAA 2 cut(s) 62, 936
Msp20I TGGCCA 1 cut(s) 649
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 2 cut(s) 117, 915
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 2 cut(s) 51, 332
MwoI GCNNNNNNNGC 9 cut(s) 97, 109, 265, 326, 417, 561, 609, 613, 853
NciI CCSGG 1 cut(s) 118
NdeII GATC 1 cut(s) 216
NlaIII CATG 5 cut(s) 546, 559, 629, 707, 883
NsbI TGCGCA 1 cut(s) 389
NspV TTCGAA 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 3 cut(s) 185, 461, 572
PflFI GACNNNGTC 1 cut(s) 202
PkrI GCNGC 6 cut(s) 39, 102, 315, 392, 422, 635
PleI GAGTC 2 cut(s) 211, 858
PmaCI CACGTG 1 cut(s) 745
PmlI CACGTG 1 cut(s) 745
PpsI GAGTC 2 cut(s) 211, 858
Ppu21I YACGTR 1 cut(s) 745
Psp124BI GAGCTC 1 cut(s) 447
PspCI CACGTG 1 cut(s) 745
PspPI GGNCC 1 cut(s) 499
PstI CTGCAG 1 cut(s) 405
PstNI CAGNNNCTG 1 cut(s) 853
PsyI GACNNNGTC 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 1 cut(s) 751
RsaNI GTAC 1 cut(s) 750
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 2 cut(s) 62, 936
SatI GCNGC 6 cut(s) 38, 101, 314, 391, 421, 634
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 1 cut(s) 499
SchI GAGTC 2 cut(s) 212, 859
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 447, 589
SfaNI GCATC 2 cut(s) 246, 424
SfcI CTRYAG 3 cut(s) 401, 453, 519
SfuI TTCGAA 1 cut(s) 570
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 8 cut(s) 51, 332, 698, 716, 779, 893, 933, 956
SsiI CCGC 1 cut(s) 37
SspMI CTAG 1 cut(s) 284
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 116
TaaI ACNGT 2 cut(s) 584, 754
TaiI ACGT 2 cut(s) 156, 747
TaqI TCGA 2 cut(s) 570, 695
TasI AATT 8 cut(s) 51, 332, 698, 716, 779, 893, 933, 956
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 3 cut(s) 185, 461, 572
Tru1I TTAA 2 cut(s) 62, 936
Tru9I TTAA 2 cut(s) 62, 936
TscAI CASTG 2 cut(s) 268, 650
TseI GCWGC 5 cut(s) 100, 313, 390, 420, 633
TspDTI ATGAA 5 cut(s) 81, 195, 531, 692, 882
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 2 cut(s) 268, 650
Tth111I GACNNNGTC 1 cut(s) 202
XapI RAATTY 1 cut(s) 698
XbaI TCTAGA 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.